Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17720 and PGA1_c17730 are separated by 17 nucleotides PGA1_c17730 and PGA1_c17740 overlap by 1 nucleotides PGA1_c17740 and PGA1_c17750 are separated by 15 nucleotides PGA1_c17750 and PGA1_c17760 overlap by 8 nucleotides PGA1_c17760 and PGA1_c17770 overlap by 4 nucleotides
PGA1_c17720: PGA1_c17720 - putative phage cell wall peptidase, NlpC/P60 family, at 1,857,432 to 1,857,881
_c17720
PGA1_c17730: PGA1_c17730 - phage conserved hypothetical protein BR0599, at 1,857,899 to 1,858,849
_c17730
PGA1_c17740: PGA1_c17740 - putative gene transfer agent protein, at 1,858,849 to 1,859,481
_c17740
PGA1_c17750: PGA1_c17750 - putative gene transfer agent tail tape measure protein, at 1,859,497 to 1,860,153
_c17750
PGA1_c17760: PGA1_c17760 - gene transfer agent (GTA) protein, at 1,860,146 to 1,860,403
_c17760
PGA1_c17770: PGA1_c17770 - Protein of unknown function (DUF3356)., at 1,860,400 to 1,860,804
_c17770
Position (kb)
1858
1859
1860 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1857.900 kb on + strand at 1858.037 kb on + strand, within PGA1_c17730 at 1858.076 kb on - strand, within PGA1_c17730 at 1858.195 kb on + strand, within PGA1_c17730 at 1858.203 kb on - strand, within PGA1_c17730 at 1858.204 kb on - strand, within PGA1_c17730 at 1858.211 kb on + strand, within PGA1_c17730 at 1858.217 kb on - strand, within PGA1_c17730 at 1858.217 kb on - strand, within PGA1_c17730 at 1858.219 kb on - strand, within PGA1_c17730 at 1858.280 kb on + strand at 1858.312 kb on + strand, within PGA1_c17730 at 1858.320 kb on - strand, within PGA1_c17730 at 1858.320 kb on - strand, within PGA1_c17730 at 1858.328 kb on - strand, within PGA1_c17730 at 1858.441 kb on + strand, within PGA1_c17730 at 1858.479 kb on - strand, within PGA1_c17730 at 1858.518 kb on - strand, within PGA1_c17730 at 1858.540 kb on + strand, within PGA1_c17730 at 1858.571 kb on - strand, within PGA1_c17730 at 1858.645 kb on + strand, within PGA1_c17730 at 1858.645 kb on + strand at 1858.669 kb on - strand, within PGA1_c17730 at 1858.674 kb on - strand, within PGA1_c17730 at 1858.713 kb on + strand, within PGA1_c17730 at 1858.912 kb on + strand at 1858.912 kb on + strand at 1858.921 kb on - strand, within PGA1_c17740 at 1859.037 kb on - strand, within PGA1_c17740 at 1859.046 kb on + strand, within PGA1_c17740 at 1859.056 kb on + strand, within PGA1_c17740 at 1859.066 kb on + strand, within PGA1_c17740 at 1859.066 kb on + strand, within PGA1_c17740 at 1859.079 kb on + strand, within PGA1_c17740 at 1859.083 kb on + strand, within PGA1_c17740 at 1859.093 kb on + strand, within PGA1_c17740 at 1859.258 kb on + strand, within PGA1_c17740 at 1859.263 kb on + strand, within PGA1_c17740 at 1859.310 kb on + strand, within PGA1_c17740 at 1859.334 kb on - strand, within PGA1_c17740 at 1859.334 kb on - strand, within PGA1_c17740 at 1859.371 kb on + strand, within PGA1_c17740 at 1859.379 kb on + strand, within PGA1_c17740 at 1859.387 kb on - strand, within PGA1_c17740 at 1859.530 kb on + strand at 1859.550 kb on + strand at 1859.550 kb on + strand at 1859.609 kb on - strand, within PGA1_c17750 at 1859.609 kb on - strand, within PGA1_c17750 at 1859.629 kb on - strand, within PGA1_c17750 at 1859.676 kb on + strand, within PGA1_c17750 at 1859.684 kb on - strand, within PGA1_c17750 at 1859.684 kb on - strand, within PGA1_c17750 at 1859.684 kb on - strand, within PGA1_c17750 at 1859.695 kb on - strand, within PGA1_c17750 at 1859.821 kb on - strand, within PGA1_c17750 at 1859.878 kb on - strand, within PGA1_c17750 at 1859.917 kb on + strand, within PGA1_c17750 at 1859.918 kb on - strand, within PGA1_c17750 at 1859.930 kb on + strand, within PGA1_c17750 at 1859.930 kb on + strand, within PGA1_c17750 at 1859.989 kb on - strand, within PGA1_c17750 at 1859.995 kb on + strand, within PGA1_c17750 at 1860.062 kb on - strand, within PGA1_c17750 at 1860.141 kb on - strand at 1860.226 kb on - strand, within PGA1_c17760 at 1860.254 kb on + strand, within PGA1_c17760 at 1860.254 kb on + strand, within PGA1_c17760 at 1860.280 kb on + strand, within PGA1_c17760 at 1860.280 kb on + strand, within PGA1_c17760 at 1860.285 kb on - strand, within PGA1_c17760 at 1860.322 kb on + strand, within PGA1_c17760 at 1860.364 kb on - strand, within PGA1_c17760 at 1860.467 kb on - strand, within PGA1_c17770
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,857,900 + +0.4 1,858,037 + PGA1_c17730 0.15 +0.4 1,858,076 - PGA1_c17730 0.19 +1.0 1,858,195 + PGA1_c17730 0.31 +0.2 1,858,203 - PGA1_c17730 0.32 -0.7 1,858,204 - PGA1_c17730 0.32 -0.8 1,858,211 + PGA1_c17730 0.33 +0.2 1,858,217 - PGA1_c17730 0.33 -0.7 1,858,217 - PGA1_c17730 0.33 +1.1 1,858,219 - PGA1_c17730 0.34 -1.0 1,858,280 + -0.2 1,858,312 + PGA1_c17730 0.43 -0.8 1,858,320 - PGA1_c17730 0.44 +1.5 1,858,320 - PGA1_c17730 0.44 +0.8 1,858,328 - PGA1_c17730 0.45 +0.2 1,858,441 + PGA1_c17730 0.57 +2.4 1,858,479 - PGA1_c17730 0.61 -1.5 1,858,518 - PGA1_c17730 0.65 +0.8 1,858,540 + PGA1_c17730 0.67 -2.1 1,858,571 - PGA1_c17730 0.71 -0.2 1,858,645 + PGA1_c17730 0.78 +0.5 1,858,645 + +0.8 1,858,669 - PGA1_c17730 0.81 -0.4 1,858,674 - PGA1_c17730 0.81 -0.2 1,858,713 + PGA1_c17730 0.86 -0.4 1,858,912 + -0.6 1,858,912 + -0.4 1,858,921 - PGA1_c17740 0.11 +0.8 1,859,037 - PGA1_c17740 0.30 -2.0 1,859,046 + PGA1_c17740 0.31 +2.4 1,859,056 + PGA1_c17740 0.33 -0.2 1,859,066 + PGA1_c17740 0.34 -0.8 1,859,066 + PGA1_c17740 0.34 +0.8 1,859,079 + PGA1_c17740 0.36 -0.4 1,859,083 + PGA1_c17740 0.37 -0.7 1,859,093 + PGA1_c17740 0.39 -0.2 1,859,258 + PGA1_c17740 0.65 +1.4 1,859,263 + PGA1_c17740 0.65 -1.5 1,859,310 + PGA1_c17740 0.73 -1.3 1,859,334 - PGA1_c17740 0.77 -1.2 1,859,334 - PGA1_c17740 0.77 -1.0 1,859,371 + PGA1_c17740 0.82 -0.8 1,859,379 + PGA1_c17740 0.84 +0.0 1,859,387 - PGA1_c17740 0.85 -0.4 1,859,530 + -1.0 1,859,550 + -0.5 1,859,550 + -0.2 1,859,609 - PGA1_c17750 0.17 +1.2 1,859,609 - PGA1_c17750 0.17 -2.4 1,859,629 - PGA1_c17750 0.20 -0.8 1,859,676 + PGA1_c17750 0.27 -0.2 1,859,684 - PGA1_c17750 0.28 -0.8 1,859,684 - PGA1_c17750 0.28 -1.1 1,859,684 - PGA1_c17750 0.28 +1.0 1,859,695 - PGA1_c17750 0.30 +0.4 1,859,821 - PGA1_c17750 0.49 -2.2 1,859,878 - PGA1_c17750 0.58 +0.8 1,859,917 + PGA1_c17750 0.64 +0.1 1,859,918 - PGA1_c17750 0.64 -1.5 1,859,930 + PGA1_c17750 0.66 -0.6 1,859,930 + PGA1_c17750 0.66 -0.2 1,859,989 - PGA1_c17750 0.75 -0.2 1,859,995 + PGA1_c17750 0.76 +0.8 1,860,062 - PGA1_c17750 0.86 +0.2 1,860,141 - +0.8 1,860,226 - PGA1_c17760 0.31 -0.9 1,860,254 + PGA1_c17760 0.42 -0.6 1,860,254 + PGA1_c17760 0.42 -0.9 1,860,280 + PGA1_c17760 0.52 +1.2 1,860,280 + PGA1_c17760 0.52 -0.6 1,860,285 - PGA1_c17760 0.54 +1.2 1,860,322 + PGA1_c17760 0.68 -0.1 1,860,364 - PGA1_c17760 0.84 +0.2 1,860,467 - PGA1_c17770 0.17 +0.8
Or see this region's nucleotide sequence