Strain Fitness in Marinobacter adhaerens HP15 around HP15_114

Experiment: m.b. Tetracycline 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_113 and HP15_114 are separated by 24 nucleotidesHP15_114 and HP15_115 are separated by 14 nucleotides HP15_113: HP15_113 - outer membrane protein, probably efflux family, at 120,318 to 121,538 _113 HP15_114: HP15_114 - efflux transporter, RND family, MFP subunit, at 121,563 to 122,810 _114 HP15_115: HP15_115 - heavy metal efflux pump, CzcA family, at 122,825 to 126,022 _115 Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2 3at 120.579 kb on - strand, within HP15_113at 120.601 kb on - strand, within HP15_113at 120.603 kb on + strandat 120.603 kb on + strand, within HP15_113at 120.603 kb on + strand, within HP15_113at 120.606 kb on - strand, within HP15_113at 120.611 kb on - strand, within HP15_113at 120.611 kb on - strand, within HP15_113at 120.636 kb on - strand, within HP15_113at 120.636 kb on - strand, within HP15_113at 120.660 kb on + strand, within HP15_113at 120.660 kb on + strand, within HP15_113at 120.668 kb on - strand, within HP15_113at 120.678 kb on - strand, within HP15_113at 120.683 kb on - strand, within HP15_113at 120.683 kb on - strand, within HP15_113at 120.683 kb on - strand, within HP15_113at 120.724 kb on + strand, within HP15_113at 120.724 kb on + strand, within HP15_113at 120.724 kb on + strand, within HP15_113at 120.724 kb on + strand, within HP15_113at 120.727 kb on - strand, within HP15_113at 120.732 kb on - strand, within HP15_113at 120.767 kb on + strand, within HP15_113at 120.787 kb on + strand, within HP15_113at 120.787 kb on + strand, within HP15_113at 120.795 kb on - strand, within HP15_113at 120.795 kb on - strand, within HP15_113at 120.795 kb on - strand, within HP15_113at 120.813 kb on + strand, within HP15_113at 120.821 kb on - strand, within HP15_113at 120.887 kb on + strand, within HP15_113at 120.887 kb on + strand, within HP15_113at 120.889 kb on - strand, within HP15_113at 120.895 kb on - strand, within HP15_113at 120.940 kb on + strand, within HP15_113at 120.955 kb on - strand, within HP15_113at 120.968 kb on + strand, within HP15_113at 121.053 kb on + strand, within HP15_113at 121.066 kb on + strand, within HP15_113at 121.067 kb on + strand, within HP15_113at 121.085 kb on - strand, within HP15_113at 121.105 kb on + strand, within HP15_113at 121.105 kb on + strand, within HP15_113at 121.107 kb on + strand, within HP15_113at 121.110 kb on + strand, within HP15_113at 121.112 kb on + strand, within HP15_113at 121.113 kb on - strand, within HP15_113at 121.176 kb on - strand, within HP15_113at 121.187 kb on + strand, within HP15_113at 121.199 kb on + strand, within HP15_113at 121.301 kb on + strand, within HP15_113at 121.311 kb on + strand, within HP15_113at 121.332 kb on + strand, within HP15_113at 121.345 kb on + strand, within HP15_113at 121.353 kb on - strand, within HP15_113at 121.413 kb on - strand, within HP15_113at 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.601 kb on + strandat 121.609 kb on - strandat 121.609 kb on - strandat 121.609 kb on - strandat 121.609 kb on - strandat 121.613 kb on + strandat 121.628 kb on + strandat 121.630 kb on - strandat 121.709 kb on - strand, within HP15_114at 121.717 kb on - strand, within HP15_114at 121.765 kb on + strand, within HP15_114at 121.786 kb on - strand, within HP15_114at 121.822 kb on - strand, within HP15_114at 121.865 kb on - strand, within HP15_114at 121.867 kb on - strand, within HP15_114at 121.927 kb on + strand, within HP15_114at 121.940 kb on + strand, within HP15_114at 121.940 kb on + strand, within HP15_114at 121.984 kb on - strand, within HP15_114at 122.012 kb on + strand, within HP15_114at 122.050 kb on - strand, within HP15_114at 122.100 kb on - strand, within HP15_114at 122.109 kb on - strand, within HP15_114at 122.131 kb on - strand, within HP15_114at 122.131 kb on - strand, within HP15_114at 122.218 kb on - strand, within HP15_114at 122.222 kb on + strand, within HP15_114at 122.248 kb on + strand, within HP15_114at 122.253 kb on + strand, within HP15_114at 122.253 kb on + strand, within HP15_114at 122.268 kb on + strand, within HP15_114at 122.271 kb on - strand, within HP15_114at 122.271 kb on - strand, within HP15_114at 122.271 kb on - strand, within HP15_114at 122.271 kb on - strand, within HP15_114at 122.276 kb on - strand, within HP15_114at 122.276 kb on - strand, within HP15_114at 122.276 kb on - strand, within HP15_114at 122.307 kb on - strand, within HP15_114at 122.493 kb on + strand, within HP15_114at 122.510 kb on - strand, within HP15_114at 122.520 kb on - strand, within HP15_114at 122.581 kb on + strand, within HP15_114at 122.607 kb on - strand, within HP15_114at 122.615 kb on + strand, within HP15_114at 122.638 kb on + strand, within HP15_114at 122.642 kb on - strand, within HP15_114at 122.646 kb on - strand, within HP15_114at 122.646 kb on - strand, within HP15_114at 122.660 kb on + strand, within HP15_114at 122.668 kb on - strand, within HP15_114at 122.788 kb on + strandat 122.788 kb on + strandat 122.852 kb on + strandat 122.860 kb on - strandat 122.948 kb on - strandat 122.956 kb on + strandat 122.981 kb on - strandat 123.067 kb on + strandat 123.099 kb on + strandat 123.171 kb on - strand, within HP15_115at 123.171 kb on - strand, within HP15_115at 123.195 kb on + strand, within HP15_115at 123.195 kb on + strand, within HP15_115at 123.253 kb on - strand, within HP15_115at 123.327 kb on - strand, within HP15_115at 123.349 kb on - strand, within HP15_115at 123.362 kb on - strand, within HP15_115at 123.388 kb on + strand, within HP15_115at 123.504 kb on + strand, within HP15_115at 123.504 kb on + strand, within HP15_115at 123.563 kb on + strand, within HP15_115at 123.566 kb on - strand, within HP15_115at 123.571 kb on - strand, within HP15_115at 123.577 kb on + strand, within HP15_115at 123.606 kb on + strand, within HP15_115

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.025 mg/ml
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120,579 - HP15_113 0.21 +0.9
120,601 - HP15_113 0.23 -0.4
120,603 + +0.0
120,603 + HP15_113 0.23 +0.9
120,603 + HP15_113 0.23 -1.2
120,606 - HP15_113 0.24 +0.6
120,611 - HP15_113 0.24 -0.1
120,611 - HP15_113 0.24 -0.5
120,636 - HP15_113 0.26 +0.1
120,636 - HP15_113 0.26 -0.2
120,660 + HP15_113 0.28 +0.0
120,660 + HP15_113 0.28 +1.1
120,668 - HP15_113 0.29 -0.2
120,678 - HP15_113 0.29 -0.2
120,683 - HP15_113 0.30 +0.6
120,683 - HP15_113 0.30 +0.3
120,683 - HP15_113 0.30 +0.8
120,724 + HP15_113 0.33 +0.6
120,724 + HP15_113 0.33 +0.2
120,724 + HP15_113 0.33 +1.7
120,724 + HP15_113 0.33 +1.6
120,727 - HP15_113 0.33 -1.5
120,732 - HP15_113 0.34 +0.4
120,767 + HP15_113 0.37 -1.6
120,787 + HP15_113 0.38 -0.2
120,787 + HP15_113 0.38 +0.3
120,795 - HP15_113 0.39 +0.8
120,795 - HP15_113 0.39 -1.3
120,795 - HP15_113 0.39 +0.2
120,813 + HP15_113 0.41 +0.0
120,821 - HP15_113 0.41 +1.2
120,887 + HP15_113 0.47 -1.3
120,887 + HP15_113 0.47 -0.5
120,889 - HP15_113 0.47 -0.1
120,895 - HP15_113 0.47 +0.7
120,940 + HP15_113 0.51 +3.3
120,955 - HP15_113 0.52 +1.6
120,968 + HP15_113 0.53 +0.3
121,053 + HP15_113 0.60 +1.3
121,066 + HP15_113 0.61 +0.6
121,067 + HP15_113 0.61 -0.1
121,085 - HP15_113 0.63 -0.1
121,105 + HP15_113 0.64 +0.0
121,105 + HP15_113 0.64 -0.1
121,107 + HP15_113 0.65 +1.8
121,110 + HP15_113 0.65 +0.2
121,112 + HP15_113 0.65 -0.1
121,113 - HP15_113 0.65 -0.3
121,176 - HP15_113 0.70 -0.5
121,187 + HP15_113 0.71 -0.0
121,199 + HP15_113 0.72 -0.3
121,301 + HP15_113 0.81 -0.4
121,311 + HP15_113 0.81 -1.1
121,332 + HP15_113 0.83 +0.0
121,345 + HP15_113 0.84 +0.1
121,353 - HP15_113 0.85 +0.8
121,413 - HP15_113 0.90 +0.8
121,601 + -0.0
121,601 + -0.7
121,601 + -1.0
121,601 + +0.0
121,601 + +0.1
121,601 + -0.6
121,609 - -2.0
121,609 - -0.3
121,609 - -0.0
121,609 - +0.9
121,613 + -1.0
121,628 + -0.1
121,630 - +0.4
121,709 - HP15_114 0.12 +0.7
121,717 - HP15_114 0.12 -0.7
121,765 + HP15_114 0.16 -0.8
121,786 - HP15_114 0.18 +0.2
121,822 - HP15_114 0.21 +0.0
121,865 - HP15_114 0.24 +0.5
121,867 - HP15_114 0.24 +0.2
121,927 + HP15_114 0.29 +0.7
121,940 + HP15_114 0.30 +0.8
121,940 + HP15_114 0.30 +0.9
121,984 - HP15_114 0.34 +0.6
122,012 + HP15_114 0.36 +0.4
122,050 - HP15_114 0.39 +0.2
122,100 - HP15_114 0.43 -0.2
122,109 - HP15_114 0.44 -0.1
122,131 - HP15_114 0.46 +0.1
122,131 - HP15_114 0.46 +0.6
122,218 - HP15_114 0.52 +1.1
122,222 + HP15_114 0.53 +0.5
122,248 + HP15_114 0.55 +1.3
122,253 + HP15_114 0.55 +0.2
122,253 + HP15_114 0.55 +0.7
122,268 + HP15_114 0.56 +0.7
122,271 - HP15_114 0.57 -2.2
122,271 - HP15_114 0.57 +0.4
122,271 - HP15_114 0.57 -0.7
122,271 - HP15_114 0.57 -0.9
122,276 - HP15_114 0.57 +0.7
122,276 - HP15_114 0.57 +0.0
122,276 - HP15_114 0.57 +0.1
122,307 - HP15_114 0.60 +0.3
122,493 + HP15_114 0.75 +1.0
122,510 - HP15_114 0.76 +1.1
122,520 - HP15_114 0.77 -0.1
122,581 + HP15_114 0.82 -0.2
122,607 - HP15_114 0.84 +0.6
122,615 + HP15_114 0.84 +0.5
122,638 + HP15_114 0.86 +1.5
122,642 - HP15_114 0.86 +0.5
122,646 - HP15_114 0.87 -0.0
122,646 - HP15_114 0.87 +0.3
122,660 + HP15_114 0.88 -0.7
122,668 - HP15_114 0.89 -0.2
122,788 + +1.5
122,788 + +2.0
122,852 + -1.2
122,860 - +0.8
122,948 - +0.0
122,956 + -0.1
122,981 - -0.1
123,067 + -0.7
123,099 + -0.8
123,171 - HP15_115 0.11 +1.3
123,171 - HP15_115 0.11 +0.5
123,195 + HP15_115 0.12 +0.5
123,195 + HP15_115 0.12 +0.0
123,253 - HP15_115 0.13 -0.6
123,327 - HP15_115 0.16 -0.6
123,349 - HP15_115 0.16 -0.1
123,362 - HP15_115 0.17 +2.8
123,388 + HP15_115 0.18 +0.6
123,504 + HP15_115 0.21 -0.4
123,504 + HP15_115 0.21 -0.4
123,563 + HP15_115 0.23 -0.2
123,566 - HP15_115 0.23 +1.0
123,571 - HP15_115 0.23 +1.6
123,577 + HP15_115 0.24 +0.1
123,606 + HP15_115 0.24 -0.2

Or see this region's nucleotide sequence