Strain Fitness in Shewanella amazonensis SB2B around Sama_3539

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
4,168,971	+		Sama_3537	0.56	-0.9
4,168,971	+		Sama_3537	0.56	-0.7
4,168,971	+		Sama_3537	0.56	+0.1
4,168,971	+		Sama_3537	0.56	-0.7
4,168,971	+		Sama_3537	0.56	+0.8
4,168,971	+		Sama_3537	0.56	-0.3
4,168,972	-		Sama_3537	0.56	+0.1
4,168,972	-		Sama_3537	0.56	-1.7
4,168,972	-		Sama_3537	0.56	+1.5
4,168,972	-		Sama_3537	0.56	+1.3
4,168,972	-		Sama_3537	0.56	+1.3
4,169,009	-		Sama_3537	0.59	+0.6
4,169,040	+		Sama_3537	0.62	-0.5
4,169,040	+		Sama_3537	0.62	+0.5
4,169,040	+		Sama_3537	0.62	-0.9
4,169,041	-		Sama_3537	0.62	-0.7
4,169,041	-		Sama_3537	0.62	-0.4
4,169,041	-		Sama_3537	0.62	-0.8
4,169,041	-		Sama_3537	0.62	-1.0
4,169,069	+		Sama_3537	0.64	+0.7
4,169,069	+		Sama_3537	0.64	-0.7
4,169,070	-		Sama_3537	0.64	-0.0
4,169,070	-		Sama_3537	0.64	-1.5
4,169,070	-		Sama_3537	0.64	-0.6
4,169,070	-		Sama_3537	0.64	+1.3
4,169,070	-		Sama_3537	0.64	-0.2
4,169,070	-		Sama_3537	0.64	+0.5
4,169,070	-		Sama_3537	0.64	-1.4
4,169,089	+		Sama_3537	0.66	+2.3
4,169,089	+		Sama_3537	0.66	-3.0
4,169,090	-		Sama_3537	0.66	-1.2
4,169,090	-		Sama_3537	0.66	-0.9
4,169,090	-		Sama_3537	0.66	-0.3
4,169,090	-		Sama_3537	0.66	+0.3
4,169,090	-		Sama_3537	0.66	+1.0
4,169,090	-		Sama_3537	0.66	-0.1
4,169,132	+		Sama_3537	0.70	+0.4
4,169,132	+		Sama_3537	0.70	-1.4
4,169,132	+		Sama_3537	0.70	-1.2
4,169,132	+		Sama_3537	0.70	-0.2
4,169,133	-		Sama_3537	0.70	-1.9
4,169,133	-		Sama_3537	0.70	+0.4
4,169,133	-		Sama_3537	0.70	+0.3
4,169,133	-		Sama_3537	0.70	+1.8
4,169,133	-		Sama_3537	0.70	-0.2
4,169,176	+		Sama_3537	0.73	-1.5
4,169,176	+		Sama_3537	0.73	-1.4
4,169,176	+		Sama_3537	0.73	+1.1
4,169,177	-		Sama_3537	0.73	+0.5
4,169,210	+		Sama_3537	0.76	+1.8
4,169,210	+		Sama_3537	0.76	+0.7
4,169,210	+		Sama_3537	0.76	-0.6
4,169,210	+		Sama_3537	0.76	+2.1
4,169,211	-		Sama_3537	0.76	-1.3
4,169,211	-		Sama_3537	0.76	-1.2
4,169,211	-		Sama_3537	0.76	-0.5
4,169,211	-		Sama_3537	0.76	-1.4
4,169,211	-		Sama_3537	0.76	-0.6
4,169,215	+		Sama_3537	0.77	+0.1
4,169,216	-		Sama_3537	0.77	+0.1
4,169,222	-		Sama_3537	0.77	+1.4
4,169,222	-		Sama_3537	0.77	-0.1
4,169,222	-		Sama_3537	0.77	+0.6
4,169,236	+		Sama_3537	0.78	+1.8
4,169,236	+		Sama_3537	0.78	-0.2
4,169,236	+		Sama_3537	0.78	+0.2
4,169,236	+		Sama_3537	0.78	-0.7
4,169,236	+		Sama_3537	0.78	-1.2
4,169,237	-		Sama_3537	0.79	+0.7
4,169,237	-		Sama_3537	0.79	-1.4
4,169,237	-		Sama_3537	0.79	-1.1
4,169,237	-		Sama_3537	0.79	+1.3
4,169,237	-		Sama_3537	0.79	-0.7
4,169,237	-		Sama_3537	0.79	+0.0
4,169,237	-		Sama_3537	0.79	-0.1
4,169,237	-		Sama_3537	0.79	-0.4
4,169,237	-		Sama_3537	0.79	+0.4
4,169,237	-		Sama_3537	0.79	+1.4
4,169,279	-		Sama_3537	0.82	+0.2
4,169,279	-		Sama_3537	0.82	+1.0
4,169,301	+		Sama_3537	0.84	+2.7
4,169,301	+		Sama_3537	0.84	-1.2
4,169,301	+		Sama_3537	0.84	+0.2
4,169,301	+		Sama_3537	0.84	+0.3
4,169,301	+		Sama_3537	0.84	-0.7
4,169,302	-		Sama_3537	0.84	-1.6
4,169,302	-		Sama_3537	0.84	+2.1
4,169,302	-		Sama_3537	0.84	-2.1
4,169,302	-		Sama_3537	0.84	+4.3
4,169,303	+		Sama_3537	0.84	+0.6
4,169,303	+		Sama_3537	0.84	-1.2
4,169,303	+		Sama_3537	0.84	+0.7
4,169,303	+		Sama_3537	0.84	+0.0
4,169,303	+		Sama_3537	0.84	+0.3
4,169,303	+		Sama_3537	0.84	-0.0
4,169,303	+		Sama_3537	0.84	-1.2
4,169,303	+		Sama_3537	0.84	-1.0
4,169,303	+		Sama_3537	0.84	+0.6
4,169,303	+		Sama_3537	0.84	+0.1
4,169,304	-		Sama_3537	0.84	+1.8
4,169,304	-		Sama_3537	0.84	-0.6
4,169,304	-		Sama_3537	0.84	+0.5
4,169,304	-		Sama_3537	0.84	+1.7
4,169,304	-		Sama_3537	0.84	-0.2
4,169,304	-		Sama_3537	0.84	+0.8
4,169,304	-		Sama_3537	0.84	-2.2
4,169,323	+		Sama_3537	0.86	+1.6
4,169,323	+		Sama_3537	0.86	+1.3
4,169,373	-				-0.4
4,169,395	+				-0.7
4,169,401	+				+0.3
4,169,401	+				+0.6
4,169,402	-				+0.4
4,169,402	-				+1.1
4,169,402	-				+0.3
4,169,455	+				-0.3
4,169,455	+				-0.8
4,169,455	+				-0.7
4,169,455	+				-1.7
4,169,455	+				-0.6
4,169,456	-				+0.9
4,169,456	-				+0.4
4,169,456	-				+1.1
4,169,456	-				+0.2
4,169,456	-				+0.9
4,169,456	-				-1.0
4,169,456	-				+0.6
4,169,456	-				+2.1
4,169,491	+				-0.7
4,169,491	+				+0.6
4,169,492	-				-0.8
4,169,492	-				+0.4
4,169,528	+				-0.0
4,169,528	+				+1.1
4,169,529	-				-0.8
4,169,529	-				+1.0
4,169,529	-				+0.2
4,169,531	+				+0.5
4,169,531	+				+0.1
4,169,531	+				-0.6
4,169,531	+				+1.0
4,169,531	+				+2.2
4,169,531	+				-0.9
4,169,531	+				+1.2
4,169,531	+				+0.6
4,169,531	+				+1.3
4,169,531	+				+0.1
4,169,531	+				-1.0
4,169,531	+				-2.2
4,169,531	+				-0.2
4,169,531	+				-0.9
4,169,532	-				-0.6
4,169,532	-				+1.5
4,169,532	-				-1.2
4,169,532	-				+0.9
4,169,532	-				-2.5
4,169,532	-				+0.1
4,169,532	-				+0.2
4,169,532	-				+0.5
4,169,532	-				-0.4
4,169,532	-				-1.5
4,169,532	-				+2.9
4,169,532	-				-0.7
4,169,534	-				-1.5
4,169,605	+				+0.2
4,169,606	-				+0.9
4,169,606	-				-1.2
4,169,613	+				-0.0
4,169,613	+				-1.1
4,169,633	+				-0.5
4,169,639	+				-2.1
4,169,640	-				+1.1
4,169,645	+				+0.3
4,169,645	+				-0.0
4,169,650	+				-0.8
4,169,650	+				+1.5
4,169,650	+				-0.5
4,169,650	+				+1.7
4,169,650	+				+0.1
4,169,650	+				+0.4
4,169,651	-		Sama_3538	0.10	+1.1
4,169,651	-		Sama_3538	0.10	+2.1
4,169,651	-		Sama_3538	0.10	+0.6
4,169,651	-		Sama_3538	0.10	+0.2
4,169,651	-		Sama_3538	0.10	+0.2
4,169,651	-		Sama_3538	0.10	-3.1
4,169,671	+		Sama_3538	0.22	-0.7
4,169,671	+		Sama_3538	0.22	+1.7
4,169,672	-		Sama_3538	0.23	+2.4
4,169,733	-		Sama_3538	0.59	-1.2
4,169,733	-		Sama_3538	0.59	-0.1
4,169,733	-		Sama_3538	0.59	-1.3
4,169,735	+		Sama_3538	0.60	+0.2
4,169,735	+		Sama_3538	0.60	-1.7
4,169,736	-		Sama_3538	0.61	-0.5
4,169,736	-		Sama_3538	0.61	-0.3
4,169,788	+				+0.9
4,169,789	-				-2.0
4,169,789	-				-1.3
4,169,789	-				+0.4
4,169,792	+				-0.3
4,169,800	-				-0.2
4,169,800	-				+1.1
4,169,863	+				+4.0
4,169,894	+				+1.3
4,169,894	+				+0.1
4,169,895	-				-0.3
4,169,895	-				+0.8
4,169,905	+				-0.4
4,169,906	-				-0.1
4,169,935	+				+0.1
4,170,012	-				-0.1
4,170,012	-				-0.2
4,170,012	-				+1.7
4,170,052	+		Sama_3539	0.13	-1.8
4,170,052	+		Sama_3539	0.13	-1.2
4,170,052	+		Sama_3539	0.13	+0.9
4,170,053	-		Sama_3539	0.13	-0.0
4,170,053	-		Sama_3539	0.13	+0.1
4,170,102	-		Sama_3539	0.19	-0.6
4,170,102	-		Sama_3539	0.19	+0.1
4,170,148	+		Sama_3539	0.24	-0.7
4,170,148	+		Sama_3539	0.24	-0.2
4,170,148	+		Sama_3539	0.24	+1.3
4,170,149	-		Sama_3539	0.24	+0.0
4,170,156	-		Sama_3539	0.25	+1.6
4,170,181	+		Sama_3539	0.28	+0.7
4,170,181	+		Sama_3539	0.28	-0.5
4,170,182	-		Sama_3539	0.28	+1.7
4,170,278	-		Sama_3539	0.39	-0.4
4,170,283	-		Sama_3539	0.40	-0.4
4,170,283	-		Sama_3539	0.40	+0.1
4,170,283	-		Sama_3539	0.40	-0.4
4,170,283	-		Sama_3539	0.40	-0.1
4,170,283	-		Sama_3539	0.40	-0.4
4,170,283	-		Sama_3539	0.40	+0.6
4,170,283	-		Sama_3539	0.40	+1.3
4,170,392	+		Sama_3539	0.53	+0.9
4,170,392	+		Sama_3539	0.53	+1.4
4,170,392	+		Sama_3539	0.53	-0.1
4,170,393	-		Sama_3539	0.53	+0.5
4,170,405	+		Sama_3539	0.54	-0.4
4,170,406	-		Sama_3539	0.54	+1.8
4,170,406	-		Sama_3539	0.54	+1.3
4,170,417	+		Sama_3539	0.55	+0.7
4,170,417	+		Sama_3539	0.55	-1.5
4,170,417	+		Sama_3539	0.55	+0.8
4,170,418	-		Sama_3539	0.56	-1.2
4,170,418	-		Sama_3539	0.56	+0.0
4,170,432	+		Sama_3539	0.57	+0.9
4,170,432	+		Sama_3539	0.57	+1.1
4,170,432	+		Sama_3539	0.57	+2.2
4,170,433	-		Sama_3539	0.57	+0.2
4,170,482	+		Sama_3539	0.63	+2.0
4,170,482	+		Sama_3539	0.63	+0.6
4,170,482	+		Sama_3539	0.63	+0.2
4,170,482	+		Sama_3539	0.63	-1.0
4,170,482	+		Sama_3539	0.63	-3.0
4,170,483	-		Sama_3539	0.63	-0.0
4,170,483	-		Sama_3539	0.63	-0.4
4,170,483	-		Sama_3539	0.63	-1.1
4,170,509	+		Sama_3539	0.66	-0.4
4,170,509	+		Sama_3539	0.66	+1.1
4,170,509	+		Sama_3539	0.66	-1.8
4,170,510	-		Sama_3539	0.66	+0.1
4,170,510	-		Sama_3539	0.66	+0.6
4,170,510	-		Sama_3539	0.66	-0.2
4,170,510	-		Sama_3539	0.66	+1.1
4,170,510	-		Sama_3539	0.66	-0.5
4,170,510	-		Sama_3539	0.66	+0.4
4,170,525	+		Sama_3539	0.68	+1.5
4,170,552	-		Sama_3539	0.71	-1.8
4,170,580	+		Sama_3539	0.75	-0.5
4,170,581	-		Sama_3539	0.75	+1.0
4,170,581	-		Sama_3539	0.75	+0.4
4,170,625	+		Sama_3539	0.80	+1.3
4,170,626	-		Sama_3539	0.80	+1.2
4,170,699	+		Sama_3539	0.88	+0.7
4,170,700	-		Sama_3539	0.89	-0.7
4,170,700	-		Sama_3539	0.89	-0.7
4,170,753	-				+0.5
4,170,814	+				-1.4
4,170,815	-				-0.4
4,170,815	-				+0.3
4,170,835	+				-1.1
4,170,835	+				+1.6
4,170,836	-				+0.8
4,170,865	+				-0.2
4,170,865	+				+0.4
4,170,866	-				+2.0
4,170,866	-				+0.8
4,170,866	-				+1.9
4,170,888	+				-0.5
4,170,888	+				+1.8
4,170,933	-				-0.7
4,171,035	+				+2.8
4,171,036	-				+0.6
4,171,036	-				-0.6
4,171,224	+		Sama_3540	0.17	+0.4
4,171,224	+		Sama_3540	0.17	-1.5
4,171,224	+		Sama_3540	0.17	+0.6
4,171,224	+		Sama_3540	0.17	-1.1
4,171,224	+		Sama_3540	0.17	-1.2
4,171,224	+		Sama_3540	0.17	-1.6
4,171,224	+		Sama_3540	0.17	-0.3
4,171,224	+		Sama_3540	0.17	-0.1
4,171,225	-		Sama_3540	0.17	-0.9
4,171,225	-		Sama_3540	0.17	-0.1
4,171,225	-		Sama_3540	0.17	-0.5
4,171,227	-		Sama_3540	0.17	+0.6
4,171,334	+		Sama_3540	0.22	-0.4
4,171,334	+		Sama_3540	0.22	-0.6
4,171,334	+		Sama_3540	0.22	-1.5
4,171,334	+		Sama_3540	0.22	-2.1
4,171,335	-		Sama_3540	0.22	+0.2
4,171,335	-		Sama_3540	0.22	+0.9
4,171,347	+		Sama_3540	0.22	+0.5
4,171,347	+		Sama_3540	0.22	-0.2
4,171,347	+		Sama_3540	0.22	-0.1
4,171,348	-		Sama_3540	0.22	-0.9
4,171,357	+		Sama_3540	0.23	+0.4
4,171,357	+		Sama_3540	0.23	+2.4
4,171,358	-		Sama_3540	0.23	-0.7
4,171,387	+		Sama_3540	0.24	-0.9
4,171,387	+		Sama_3540	0.24	-0.8
4,171,388	-		Sama_3540	0.24	+0.3
4,171,410	+		Sama_3540	0.25	-2.1
4,171,410	+		Sama_3540	0.25	-1.6
4,171,410	+		Sama_3540	0.25	+1.4
4,171,411	-		Sama_3540	0.25	-1.0
4,171,411	-		Sama_3540	0.25	+1.0
4,171,411	-		Sama_3540	0.25	-0.2
4,171,411	-		Sama_3540	0.25	-1.5
4,171,411	-		Sama_3540	0.25	+2.0
4,171,411	-		Sama_3540	0.25	+0.9
4,171,415	+		Sama_3540	0.25	-0.7
4,171,416	-		Sama_3540	0.25	+1.3
4,171,452	-		Sama_3540	0.27	-1.1
4,171,452	-		Sama_3540	0.27	-1.0
4,171,475	+		Sama_3540	0.28	+0.6
4,171,475	+		Sama_3540	0.28	+1.4
4,171,476	-		Sama_3540	0.28	+2.6
4,171,476	-		Sama_3540	0.28	+1.1
4,171,480	+		Sama_3540	0.28	+0.9
4,171,481	-		Sama_3540	0.28	+0.3
4,171,610	+		Sama_3540	0.34	-0.5
4,171,610	+		Sama_3540	0.34	+0.2
4,171,611	-		Sama_3540	0.34	+1.5
4,171,611	-		Sama_3540	0.34	+1.4
4,171,611	-		Sama_3540	0.34	+0.0
4,171,643	+		Sama_3540	0.35	+2.7
4,171,643	+		Sama_3540	0.35	-1.4
4,171,644	-		Sama_3540	0.35	-0.9
4,171,644	-		Sama_3540	0.35	-1.4
4,171,644	-		Sama_3540	0.35	-2.2
4,171,644	-		Sama_3540	0.35	+0.9
4,171,671	-		Sama_3540	0.36	+2.2
4,171,671	-		Sama_3540	0.36	-1.1
4,171,677	+		Sama_3540	0.37	-1.9
4,171,678	-		Sama_3540	0.37	+1.2
4,171,695	+		Sama_3540	0.37	-0.5
4,171,695	+		Sama_3540	0.37	-0.1
4,171,696	-		Sama_3540	0.37	+0.6
4,171,696	-		Sama_3540	0.37	-0.2