Strain Fitness in Shewanella amazonensis SB2B around Sama_2892

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
3,433,482	+				-2.2
3,433,493	-				-2.3
3,433,504	+				-2.1
3,433,505	-				-4.0
3,433,519	+				-0.6
3,433,519	+				-2.9
3,433,520	-				-2.1
3,433,520	-				-2.5
3,433,520	-				-0.7
3,433,520	-				-3.3
3,433,520	-				-3.7
3,433,679	+		Sama_2891	0.17	+0.1
3,433,680	-		Sama_2891	0.17	-3.8
3,433,744	-		Sama_2891	0.24	-1.9
3,433,744	-		Sama_2891	0.24	-2.2
3,433,744	-		Sama_2891	0.24	-2.3
3,433,808	+		Sama_2891	0.31	-3.1
3,433,809	-		Sama_2891	0.31	-3.2
3,433,809	-		Sama_2891	0.31	-1.0
3,433,809	-		Sama_2891	0.31	-2.9
3,433,809	-		Sama_2891	0.31	-1.8
3,433,809	-		Sama_2891	0.31	-2.9
3,433,819	+		Sama_2891	0.32	-2.8
3,433,819	+		Sama_2891	0.32	-2.7
3,433,819	+		Sama_2891	0.32	-0.7
3,433,819	+		Sama_2891	0.32	-1.5
3,433,819	+		Sama_2891	0.32	-2.0
3,433,820	-		Sama_2891	0.32	-0.5
3,433,820	-		Sama_2891	0.32	-2.3
3,433,839	-		Sama_2891	0.35	-3.6
3,433,839	-		Sama_2891	0.35	-3.5
3,433,844	+		Sama_2891	0.35	-0.9
3,433,844	+		Sama_2891	0.35	-1.7
3,433,844	+		Sama_2891	0.35	-1.3
3,433,845	-		Sama_2891	0.35	-3.0
3,433,845	-		Sama_2891	0.35	-3.9
3,433,845	-		Sama_2891	0.35	-3.6
3,433,845	-		Sama_2891	0.35	-1.7
3,433,923	-		Sama_2891	0.44	-2.8
3,433,923	-		Sama_2891	0.44	-2.9
3,433,923	-		Sama_2891	0.44	-2.9
3,433,988	+		Sama_2891	0.51	-2.9
3,433,989	-		Sama_2891	0.51	-5.0
3,434,058	-		Sama_2891	0.59	-2.5
3,434,058	-		Sama_2891	0.59	-4.3
3,434,058	-		Sama_2891	0.59	-2.9
3,434,058	-		Sama_2891	0.59	-1.9
3,434,058	-		Sama_2891	0.59	-3.5
3,434,186	+		Sama_2891	0.73	-3.9
3,434,186	+		Sama_2891	0.73	-3.7
3,434,334	-		Sama_2891	0.89	-3.9
3,434,334	-		Sama_2891	0.89	-1.9
3,434,416	+				-1.9
3,434,417	-				-4.7
3,434,417	-				-0.5
3,434,451	+				-5.6
3,434,452	-				-3.5
3,434,452	-				-4.3
3,434,452	-				-5.0
3,434,452	-				-2.6
3,434,452	-				+0.1
3,434,453	+				-3.6
3,434,453	+				-2.8
3,434,453	+				-3.3
3,434,454	-				-1.0
3,434,454	-				-2.1
3,434,454	-				-3.5
3,434,569	+		Sama_2892	0.11	-2.5
3,434,753	+		Sama_2892	0.34	-2.7
3,434,753	+		Sama_2892	0.34	-2.4
3,434,753	+		Sama_2892	0.34	-2.4
3,434,754	-		Sama_2892	0.34	-2.6
3,434,754	-		Sama_2892	0.34	-4.1
3,434,754	-		Sama_2892	0.34	-4.3
3,434,754	-		Sama_2892	0.34	-2.6
3,434,754	-		Sama_2892	0.34	-1.1
3,434,754	-		Sama_2892	0.34	-3.4
3,434,754	-		Sama_2892	0.34	-2.7
3,434,754	-		Sama_2892	0.34	-5.0
3,434,754	-		Sama_2892	0.34	-4.2
3,434,754	-		Sama_2892	0.34	-1.6
3,434,783	+		Sama_2892	0.38	-2.5
3,434,784	-		Sama_2892	0.38	-3.3
3,434,833	-		Sama_2892	0.44	-2.7
3,434,833	-		Sama_2892	0.44	-0.4
3,434,866	-		Sama_2892	0.48	-4.8
3,434,883	-		Sama_2892	0.50	-2.7
3,434,883	-		Sama_2892	0.50	-3.0
3,434,983	-		Sama_2892	0.62	-1.5
3,435,025	-		Sama_2892	0.67	-3.3
3,435,025	-		Sama_2892	0.67	-2.1
3,435,051	+		Sama_2892	0.71	-2.5
3,435,052	-		Sama_2892	0.71	-2.4
3,435,158	+		Sama_2892	0.84	-2.3
3,435,159	-		Sama_2892	0.84	-3.3
3,435,277	+				-1.1
3,435,277	+				-0.9
3,435,278	-				-2.3
3,435,278	-				-3.1
3,435,278	-				-4.1
3,435,278	-				-2.8
3,435,278	-				-2.6
3,435,278	-				-2.7
3,435,278	-				-4.7
3,435,288	+				-3.2
3,435,288	+				-1.5
3,435,289	-				-3.2
3,435,289	-				-2.2
3,435,289	-				-3.9
3,435,303	-				-3.3
3,435,320	+				-3.2
3,435,320	+				-3.3
3,435,320	+				-3.1
3,435,321	-				-1.9
3,435,321	-				-2.0
3,435,321	-				-2.8
3,435,323	-				-0.6
3,435,333	-				+0.4
3,435,335	-				-2.7
3,435,448	-				-0.1
3,435,472	-				-1.0
3,435,487	+				-0.2
3,435,497	+				+1.0
3,435,508	+				-0.1
3,435,508	+				+1.1
3,435,508	+				-0.5
3,435,509	-				-0.4
3,435,509	-				+0.3
3,435,509	-				+0.5
3,435,509	-				-1.0
3,435,528	+				-1.2
3,435,529	-				+0.2
3,435,545	+				-0.4
3,435,582	+				-0.5
3,435,603	-				-1.3
3,435,612	+				-0.5
3,435,613	-				-1.3
3,435,623	-				-0.9
3,435,623	-				-0.2
3,435,629	+				+1.9
3,435,629	+				+0.8
3,435,629	+				-1.9
3,435,629	+				-0.2
3,435,629	+				-0.2
3,435,630	-				-0.4
3,435,630	-				-0.3
3,435,631	+				+0.9
3,435,631	+				-0.7
3,435,631	+				-0.1
3,435,632	-				+0.4
3,435,632	-				-0.3
3,435,632	-				-0.4
3,435,632	-				+0.1
3,435,632	-				-0.6
3,435,632	-				-2.4
3,435,632	-				+0.9
3,435,632	-				+0.4
3,435,667	+				+1.0
3,435,667	+				+2.3
3,435,667	+				-1.5
3,435,671	+				+0.8
3,435,671	+				+1.1
3,435,671	+				+0.5
3,435,672	-				+1.1
3,435,675	-				-1.7
3,435,687	+				+0.3
3,435,687	+				+0.0
3,435,688	-				-1.4
3,435,688	-				-0.1
3,435,688	-				+1.5
3,435,753	+		Sama_2893	0.12	+1.7
3,435,753	+		Sama_2893	0.12	+0.6
3,435,753	+		Sama_2893	0.12	-0.7
3,435,754	-		Sama_2893	0.12	+0.2
3,435,796	+		Sama_2893	0.17	-1.6
3,435,796	+		Sama_2893	0.17	+0.4
3,435,796	+		Sama_2893	0.17	-0.6
3,435,796	+		Sama_2893	0.17	-0.1
3,435,796	+		Sama_2893	0.17	+1.9
3,435,796	+		Sama_2893	0.17	-0.5
3,435,796	+		Sama_2893	0.17	+0.1
3,435,796	+		Sama_2893	0.17	-0.7
3,435,797	-		Sama_2893	0.17	+0.5
3,435,797	-		Sama_2893	0.17	-1.0
3,435,797	-		Sama_2893	0.17	-1.2
3,435,797	-		Sama_2893	0.17	-0.2
3,435,797	-		Sama_2893	0.17	-1.1
3,435,797	-		Sama_2893	0.17	-0.3
3,435,797	-		Sama_2893	0.17	-0.3
3,435,797	-		Sama_2893	0.17	-1.1
3,435,797	-		Sama_2893	0.17	-0.7
3,435,797	-		Sama_2893	0.17	-1.6
3,435,797	-		Sama_2893	0.17	+0.4
3,435,800	+		Sama_2893	0.17	-0.4
3,435,801	-		Sama_2893	0.17	+0.2
3,435,801	-		Sama_2893	0.17	-1.6
3,435,801	-		Sama_2893	0.17	+0.0
3,435,801	-		Sama_2893	0.17	-2.7
3,435,801	-		Sama_2893	0.17	+0.8
3,435,801	-		Sama_2893	0.17	-0.9
3,435,814	+		Sama_2893	0.19	-0.1
3,435,815	-		Sama_2893	0.19	-0.3
3,435,831	+		Sama_2893	0.21	-1.2
3,435,831	+		Sama_2893	0.21	+1.6
3,435,832	-		Sama_2893	0.21	+2.3
3,435,832	-		Sama_2893	0.21	-1.1
3,435,832	-		Sama_2893	0.21	+2.1
3,435,902	+		Sama_2893	0.29	-1.5
3,435,902	+		Sama_2893	0.29	-3.7
3,435,902	+		Sama_2893	0.29	-1.8
3,435,903	-		Sama_2893	0.29	+0.1
3,435,903	-		Sama_2893	0.29	+0.1
3,435,909	+		Sama_2893	0.29	+2.1
3,435,910	-		Sama_2893	0.29	-0.9
3,435,925	+		Sama_2893	0.31	-0.9
3,435,925	+		Sama_2893	0.31	-0.3
3,435,925	+		Sama_2893	0.31	-1.9
3,435,925	+		Sama_2893	0.31	-0.8
3,435,925	+		Sama_2893	0.31	+0.5
3,435,926	-		Sama_2893	0.31	-0.5
3,435,926	-		Sama_2893	0.31	-0.1
3,435,926	-		Sama_2893	0.31	-0.7
3,435,926	-		Sama_2893	0.31	-0.7
3,435,926	-		Sama_2893	0.31	-0.3
3,435,926	-		Sama_2893	0.31	-0.8
3,435,927	+		Sama_2893	0.31	-0.7
3,435,928	-		Sama_2893	0.32	+0.3
3,435,964	+		Sama_2893	0.36	-0.4
3,435,965	-		Sama_2893	0.36	-0.4
3,435,966	+		Sama_2893	0.36	-0.5
3,435,966	+		Sama_2893	0.36	-0.3
3,435,966	+		Sama_2893	0.36	+1.3
3,435,966	+		Sama_2893	0.36	-1.9
3,435,966	+		Sama_2893	0.36	+1.7
3,435,966	+		Sama_2893	0.36	+1.5
3,435,967	-		Sama_2893	0.36	-0.2
3,435,967	-		Sama_2893	0.36	-0.6
3,435,979	+		Sama_2893	0.37	+0.8
3,435,980	-		Sama_2893	0.37	+1.9
3,435,980	-		Sama_2893	0.37	+1.9
3,435,989	+		Sama_2893	0.38	-0.1
3,435,989	+		Sama_2893	0.38	-1.4
3,435,989	+		Sama_2893	0.38	+0.1
3,435,989	+		Sama_2893	0.38	+0.2
3,435,990	-		Sama_2893	0.39	-1.0
3,435,990	-		Sama_2893	0.39	-1.7
3,435,990	-		Sama_2893	0.39	+0.1
3,435,990	-		Sama_2893	0.39	+1.6
3,435,991	+		Sama_2893	0.39	+0.3
3,435,991	+		Sama_2893	0.39	+0.5
3,435,991	+		Sama_2893	0.39	+3.9
3,435,991	+		Sama_2893	0.39	+1.0
3,435,991	+		Sama_2893	0.39	+0.4
3,435,991	+		Sama_2893	0.39	-0.9
3,435,991	+		Sama_2893	0.39	+1.3
3,435,991	+		Sama_2893	0.39	-0.2
3,435,991	+		Sama_2893	0.39	-2.6
3,435,991	+		Sama_2893	0.39	+2.9
3,435,991	+		Sama_2893	0.39	+1.3
3,435,991	+		Sama_2893	0.39	-3.1
3,435,991	+		Sama_2893	0.39	-0.3
3,435,992	-		Sama_2893	0.39	+0.3
3,435,992	-		Sama_2893	0.39	-0.5
3,435,992	-		Sama_2893	0.39	+0.3
3,435,992	-		Sama_2893	0.39	-0.8
3,435,992	-		Sama_2893	0.39	+1.0
3,435,992	-		Sama_2893	0.39	+0.6
3,435,992	-		Sama_2893	0.39	-1.8
3,435,992	-		Sama_2893	0.39	-1.1
3,435,992	-		Sama_2893	0.39	+0.1
3,435,992	-		Sama_2893	0.39	-0.8
3,435,992	-		Sama_2893	0.39	+0.1
3,435,992	-		Sama_2893	0.39	-2.1
3,435,992	-		Sama_2893	0.39	-0.1
3,436,047	+		Sama_2893	0.45	-2.2
3,436,047	+		Sama_2893	0.45	-1.1
3,436,047	+		Sama_2893	0.45	+1.1
3,436,047	+		Sama_2893	0.45	+0.0
3,436,048	-		Sama_2893	0.45	-1.1
3,436,048	-		Sama_2893	0.45	-0.5
3,436,048	-		Sama_2893	0.45	-2.3
3,436,048	-		Sama_2893	0.45	+0.3
3,436,048	-		Sama_2893	0.45	-1.6
3,436,048	-		Sama_2893	0.45	+0.3
3,436,112	+		Sama_2893	0.52	-1.9
3,436,112	+		Sama_2893	0.52	-1.8
3,436,113	-		Sama_2893	0.52	-0.1
3,436,113	-		Sama_2893	0.52	-0.8
3,436,113	-		Sama_2893	0.52	-0.7
3,436,214	+		Sama_2893	0.64	+1.2
3,436,214	+		Sama_2893	0.64	-0.1
3,436,214	+		Sama_2893	0.64	+1.0
3,436,214	+		Sama_2893	0.64	+0.4
3,436,215	-		Sama_2893	0.64	+0.9
3,436,246	+		Sama_2893	0.67	+1.0
3,436,246	+		Sama_2893	0.67	+0.2
3,436,247	-		Sama_2893	0.68	+1.0