Strain Fitness in Shewanella amazonensis SB2B around Sama_2719

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
3,251,224	+		Sama_2718	0.34	-0.6
3,251,225	-		Sama_2718	0.34	+0.3
3,251,228	-		Sama_2718	0.35	+0.2
3,251,346	+		Sama_2718	0.50	-0.6
3,251,404	+		Sama_2718	0.57	-1.9
3,251,406	+		Sama_2718	0.57	+2.4
3,251,473	-		Sama_2718	0.65	-0.1
3,251,473	-		Sama_2718	0.65	+1.5
3,251,532	-		Sama_2718	0.73	+4.0
3,251,533	+		Sama_2718	0.73	-1.7
3,251,533	+		Sama_2718	0.73	-0.9
3,251,550	+		Sama_2718	0.75	+0.9
3,251,713	+				+0.4
3,251,858	-				+1.8
3,251,913	+				+1.1
3,251,932	+				-0.6
3,251,943	+				+0.5
3,251,944	-				-0.5
3,251,965	-				+0.9
3,251,986	-				-0.6
3,252,030	+				-1.9
3,252,088	-				-0.9
3,252,167	-				-0.6
3,252,172	+				-1.7
3,252,217	+				-4.5
3,252,217	+				-2.2
3,252,217	+				-3.2
3,252,217	+				-2.5
3,252,217	+				-4.0
3,252,217	+				-2.6
3,252,217	+				-0.7
3,252,217	+				-3.8
3,252,217	+				-1.8
3,252,218	-				-0.7
3,252,218	-				-2.2
3,252,218	-				-2.7
3,252,301	+				-3.0
3,252,301	+				-3.5
3,252,301	+				-1.8
3,252,302	-				-4.3
3,252,302	-				-3.4
3,252,532	+		Sama_2719	0.13	-3.6
3,252,533	-		Sama_2719	0.13	-3.4
3,252,596	+		Sama_2719	0.15	-2.8
3,252,596	+		Sama_2719	0.15	-2.0
3,252,597	-		Sama_2719	0.15	-3.5
3,252,640	+		Sama_2719	0.16	-3.3
3,252,708	-		Sama_2719	0.19	-4.3
3,252,708	-		Sama_2719	0.19	-2.7
3,252,745	+		Sama_2719	0.20	-3.4
3,252,745	+		Sama_2719	0.20	-2.7
3,252,745	+		Sama_2719	0.20	-5.1
3,252,745	+		Sama_2719	0.20	-0.1
3,252,746	-		Sama_2719	0.20	-1.7
3,252,746	-		Sama_2719	0.20	-2.9
3,252,746	-		Sama_2719	0.20	-1.1
3,252,746	-		Sama_2719	0.20	-4.0
3,252,796	-		Sama_2719	0.22	-2.7
3,252,949	-		Sama_2719	0.27	-3.0
3,252,949	-		Sama_2719	0.27	-3.0
3,252,978	-		Sama_2719	0.28	-1.0
3,252,978	-		Sama_2719	0.28	-2.0
3,252,978	-		Sama_2719	0.28	-2.6
3,252,984	+		Sama_2719	0.28	-3.7
3,252,984	+		Sama_2719	0.28	-5.0
3,252,985	-		Sama_2719	0.28	-2.1
3,252,985	-		Sama_2719	0.28	-2.8
3,253,015	+		Sama_2719	0.29	-2.6
3,253,016	-		Sama_2719	0.29	-4.3
3,253,016	-		Sama_2719	0.29	-4.2
3,253,073	-		Sama_2719	0.31	-4.2
3,253,073	-		Sama_2719	0.31	-4.4
3,253,074	+		Sama_2719	0.31	-3.0
3,253,074	+		Sama_2719	0.31	-3.0
3,253,074	+		Sama_2719	0.31	-3.4
3,253,074	+		Sama_2719	0.31	+1.1
3,253,074	+		Sama_2719	0.31	-2.6
3,253,075	-		Sama_2719	0.31	-2.8
3,253,075	-		Sama_2719	0.31	-2.1
3,253,075	-		Sama_2719	0.31	-1.7
3,253,075	-		Sama_2719	0.31	-3.4
3,253,075	-		Sama_2719	0.31	-2.6
3,253,075	-		Sama_2719	0.31	-4.9
3,253,093	+		Sama_2719	0.32	-3.2
3,253,094	-		Sama_2719	0.32	-2.4
3,253,322	-		Sama_2719	0.40	-3.7
3,253,367	-		Sama_2719	0.42	-1.6
3,253,367	-		Sama_2719	0.42	-4.3
3,253,579	+		Sama_2719	0.49	-2.0
3,253,606	+		Sama_2719	0.50	-2.7
3,253,607	-		Sama_2719	0.50	-2.5
3,253,607	-		Sama_2719	0.50	-2.0
3,253,607	-		Sama_2719	0.50	-2.4
3,253,607	-		Sama_2719	0.50	-2.0
3,253,647	+		Sama_2719	0.51	-1.6
3,253,770	-		Sama_2719	0.56	-2.6
3,253,813	+		Sama_2719	0.57	-4.4
3,253,851	+		Sama_2719	0.58	-3.7
3,253,851	+		Sama_2719	0.58	-3.1
3,253,851	+		Sama_2719	0.58	-3.6
3,253,852	-		Sama_2719	0.58	-1.6
3,253,852	-		Sama_2719	0.58	-3.2
3,253,878	+		Sama_2719	0.59	-2.1
3,253,878	+		Sama_2719	0.59	-2.0
3,253,878	+		Sama_2719	0.59	-4.0
3,253,878	+		Sama_2719	0.59	-2.9
3,253,879	-		Sama_2719	0.59	-2.1
3,253,879	-		Sama_2719	0.59	-1.7
3,253,883	+		Sama_2719	0.59	-3.5
3,253,884	-		Sama_2719	0.60	-2.3
3,253,884	-		Sama_2719	0.60	-2.6
3,254,008	+		Sama_2719	0.64	-2.4
3,254,009	-		Sama_2719	0.64	-3.9
3,254,009	-		Sama_2719	0.64	-3.0
3,254,045	+		Sama_2719	0.65	-3.1
3,254,045	+		Sama_2719	0.65	-3.4
3,254,046	-		Sama_2719	0.65	-3.8
3,254,150	+		Sama_2719	0.69	-1.7
3,254,150	+		Sama_2719	0.69	-2.0
3,254,151	-		Sama_2719	0.69	-3.5
3,254,163	-		Sama_2719	0.69	-2.4
3,254,163	-		Sama_2719	0.69	-2.3
3,254,171	+		Sama_2719	0.69	-1.6
3,254,171	+		Sama_2719	0.69	-2.6
3,254,171	+		Sama_2719	0.69	-3.0
3,254,171	+		Sama_2719	0.69	-2.8
3,254,172	-		Sama_2719	0.69	-2.5
3,254,172	-		Sama_2719	0.69	-3.7
3,254,172	-		Sama_2719	0.69	-3.7
3,254,226	+		Sama_2719	0.71	-2.0
3,254,395	+		Sama_2719	0.77	-0.4
3,254,491	-		Sama_2719	0.81	-2.5
3,254,537	+		Sama_2719	0.82	-2.5
3,254,537	+		Sama_2719	0.82	-2.1
3,254,537	+		Sama_2719	0.82	-3.4
3,254,538	-		Sama_2719	0.82	-2.9
3,254,538	-		Sama_2719	0.82	-3.0
3,254,716	+		Sama_2719	0.88	-5.2
3,254,717	-		Sama_2719	0.88	-2.5
3,254,717	-		Sama_2719	0.88	-3.5
3,254,717	-		Sama_2719	0.88	-2.8
3,254,725	+		Sama_2719	0.89	-2.4
3,254,725	+		Sama_2719	0.89	-4.1
3,254,726	-		Sama_2719	0.89	-1.4
3,254,726	-		Sama_2719	0.89	-1.1
3,254,751	-		Sama_2719	0.90	-4.2
3,254,765	+				-2.6
3,254,766	-				-1.4
3,254,792	+				-2.4
3,254,792	+				-1.9
3,254,800	+				-2.4
3,254,800	+				-3.4
3,254,800	+				-4.0
3,254,800	+				-3.4
3,254,800	+				-2.9
3,254,801	-				-3.5
3,254,801	-				-3.6
3,254,801	-				-1.7
3,254,843	-				-1.3
3,254,843	-				-1.4
3,254,877	+				-2.4
3,254,878	-				-3.4
3,254,956	+				-4.8
3,254,956	+				-3.5
3,254,956	+				-3.1
3,254,956	+				-1.9
3,254,956	+				-3.2
3,254,956	+				-3.3
3,254,956	+				-1.7
3,254,956	+				-1.8
3,254,956	+				-3.2
3,254,956	+				-2.3
3,254,956	+				-2.0
3,254,956	+				-3.0
3,254,956	+				-1.4
3,254,956	+				-0.4
3,254,957	-				-2.8
3,254,957	-				-3.5
3,254,957	-				-3.0
3,254,957	-				-1.7
3,255,057	-				-1.6
3,255,057	-				-3.0
3,255,101	+				-1.4
3,255,102	-				-0.7
3,255,102	-				-0.7
3,255,102	-				-0.7
3,255,111	-				-0.0
3,255,157	-				-3.6
3,255,157	-				-4.4
3,255,157	-				-5.1
3,255,157	-				-2.2
3,255,157	-				-3.5
3,255,170	-				-4.3
3,255,181	-				-2.9
3,255,269	+		Sama_2720	0.29	-3.7
3,255,270	-		Sama_2720	0.29	-2.5
3,255,270	-		Sama_2720	0.29	+0.1
3,255,303	-		Sama_2720	0.38	-3.3
3,255,333	+		Sama_2720	0.46	-2.8
3,255,333	+		Sama_2720	0.46	-2.8
3,255,333	+		Sama_2720	0.46	-1.9
3,255,333	+		Sama_2720	0.46	-2.7
3,255,333	+		Sama_2720	0.46	-2.4
3,255,333	+		Sama_2720	0.46	-4.8
3,255,333	+		Sama_2720	0.46	-4.9
3,255,333	+		Sama_2720	0.46	-2.1
3,255,333	+		Sama_2720	0.46	-3.3
3,255,333	+		Sama_2720	0.46	-3.9
3,255,333	+		Sama_2720	0.46	-2.9
3,255,333	+		Sama_2720	0.46	-4.2
3,255,333	+		Sama_2720	0.46	-4.5
3,255,333	+		Sama_2720	0.46	-0.7
3,255,333	+		Sama_2720	0.46	-2.8
3,255,333	+		Sama_2720	0.46	-0.4
3,255,334	-		Sama_2720	0.46	-2.3
3,255,334	-		Sama_2720	0.46	-4.1
3,255,334	-		Sama_2720	0.46	-3.1
3,255,334	-		Sama_2720	0.46	-5.1
3,255,334	-		Sama_2720	0.46	-1.3
3,255,334	-		Sama_2720	0.46	-0.9
3,255,334	-		Sama_2720	0.46	-2.9
3,255,334	-		Sama_2720	0.46	-1.1
3,255,334	-		Sama_2720	0.46	-2.8
3,255,334	-		Sama_2720	0.46	-3.8
3,255,334	-		Sama_2720	0.46	-2.2
3,255,334	-		Sama_2720	0.46	-1.9
3,255,334	-		Sama_2720	0.46	-3.6
3,255,334	-		Sama_2720	0.46	-3.3
3,255,334	-		Sama_2720	0.46	-4.2
3,255,334	-		Sama_2720	0.46	-4.3
3,255,334	-		Sama_2720	0.46	-3.0
3,255,334	-		Sama_2720	0.46	-1.3
3,255,334	-		Sama_2720	0.46	-3.9
3,255,366	-		Sama_2720	0.54	-3.6
3,255,423	-		Sama_2720	0.69	-3.4
3,255,423	-		Sama_2720	0.69	-2.7
3,255,461	-		Sama_2720	0.78	-3.8
3,255,461	-		Sama_2720	0.78	-3.7
3,255,461	-		Sama_2720	0.78	-7.0
3,255,464	+		Sama_2720	0.79	-4.4
3,255,464	+		Sama_2720	0.79	-2.9
3,255,464	+		Sama_2720	0.79	-0.4
3,255,465	-		Sama_2720	0.79	-2.1
3,255,465	-		Sama_2720	0.79	-4.1
3,255,465	-		Sama_2720	0.79	-3.9
3,255,465	-		Sama_2720	0.79	-0.7
3,255,465	-		Sama_2720	0.79	-4.0
3,255,471	+		Sama_2720	0.81	-1.9
3,255,471	+		Sama_2720	0.81	-3.5
3,255,471	+		Sama_2720	0.81	-2.3
3,255,516	+				-3.6
3,255,516	+				-3.9
3,255,517	-				-1.5
3,255,517	-				-3.3
3,255,517	-				-2.1
3,255,517	-				-2.5
3,255,517	-				-4.2
3,255,517	-				-3.6
3,255,517	-				-2.6
3,255,517	-				-3.6
3,255,535	+				-3.9
3,255,595	-				-2.6
3,255,595	-				-3.9
3,255,692	+	gcvT	Sama_2721	0.11	-1.1
3,255,693	-	gcvT	Sama_2721	0.11	-1.3
3,255,693	-	gcvT	Sama_2721	0.11	-2.2
3,255,719	+	gcvT	Sama_2721	0.14	-3.7
3,255,720	-	gcvT	Sama_2721	0.14	-2.6
3,255,779	+	gcvT	Sama_2721	0.19	-4.3
3,255,779	+	gcvT	Sama_2721	0.19	-2.4
3,255,780	-	gcvT	Sama_2721	0.19	-1.4
3,255,780	-	gcvT	Sama_2721	0.19	-2.0
3,255,780	-	gcvT	Sama_2721	0.19	-4.4
3,255,822	+	gcvT	Sama_2721	0.23	-3.1