Strain Fitness in Shewanella amazonensis SB2B around Sama_2425

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
2,919,249	+		Sama_2424	0.45	+0.4
2,919,249	+		Sama_2424	0.45	-0.1
2,919,249	+		Sama_2424	0.45	-0.6
2,919,249	+		Sama_2424	0.45	+1.1
2,919,249	+		Sama_2424	0.45	-0.4
2,919,250	-		Sama_2424	0.46	-2.3
2,919,250	-		Sama_2424	0.46	+0.3
2,919,250	-		Sama_2424	0.46	-0.5
2,919,275	-		Sama_2424	0.50	-0.3
2,919,289	-		Sama_2424	0.52	-0.9
2,919,289	-		Sama_2424	0.52	+4.3
2,919,366	+		Sama_2424	0.65	-1.8
2,919,366	+		Sama_2424	0.65	+0.3
2,919,367	-		Sama_2424	0.65	+0.2
2,919,367	-		Sama_2424	0.65	-0.7
2,919,381	+		Sama_2424	0.67	+1.0
2,919,412	+		Sama_2424	0.72	+1.2
2,919,433	+		Sama_2424	0.75	-0.1
2,919,434	-		Sama_2424	0.76	-0.5
2,919,441	-		Sama_2424	0.77	-1.0
2,919,452	+		Sama_2424	0.79	-2.4
2,919,452	+		Sama_2424	0.79	-0.7
2,919,452	+		Sama_2424	0.79	+0.9
2,919,453	-		Sama_2424	0.79	+0.2
2,919,506	+		Sama_2424	0.87	-1.7
2,919,664	-				+1.3
2,919,709	+				-1.7
2,919,710	-				+0.9
2,919,710	-				-0.9
2,919,714	+				+0.2
2,919,714	+				-0.9
2,919,714	+				+2.0
2,919,714	+				+1.5
2,919,714	+				+0.3
2,919,714	+				-1.2
2,919,714	+				+0.7
2,919,714	+				+0.6
2,919,714	+				+1.3
2,919,714	+				-0.7
2,919,714	+				+0.0
2,919,714	+				-1.0
2,919,714	+				-0.8
2,919,714	+				-0.4
2,919,714	+				-1.6
2,919,714	+				+0.3
2,919,715	-				-0.2
2,919,715	-				-0.7
2,919,715	-				+0.7
2,919,715	-				-3.4
2,919,715	-				+0.7
2,919,715	-				-1.5
2,919,715	-				-0.6
2,919,715	-				+0.5
2,919,715	-				+0.7
2,919,715	-				+0.4
2,919,715	-				-1.8
2,919,715	-				+1.1
2,919,715	-				-2.7
2,919,715	-				-1.0
2,919,715	-				-2.1
2,919,715	-				-2.4
2,919,715	-				-0.3
2,919,715	-				+0.8
2,919,715	-				-2.4
2,919,715	-				+1.2
2,919,716	+				+0.7
2,919,717	-				+0.9
2,919,717	-				-0.4
2,919,759	+				-0.6
2,919,760	-				-1.9
2,919,760	-				-0.2
2,919,760	-				+1.8
2,919,760	-				+1.8
2,919,796	-				-0.1
2,919,800	+				+0.1
2,919,800	+				-0.7
2,919,800	+				+0.5
2,919,801	-				+2.4
2,919,801	-				+0.7
2,919,819	+				+0.1
2,919,819	+				+0.3
2,919,819	+				-1.2
2,919,819	+				+0.1
2,919,819	+				+0.7
2,919,819	+				-0.1
2,919,861	-				+0.7
2,919,861	-				+0.0
2,919,861	-				-1.2
2,919,884	+				+1.2
2,919,924	+				+1.0
2,919,924	+				-0.4
2,919,924	+				-0.3
2,919,925	-				-0.3
2,919,925	-				-1.1
2,919,925	-				+0.1
2,919,928	-				-0.3
2,919,961	-				+1.9
2,919,961	-				+0.1
2,919,961	-				-0.6
2,919,978	+				-0.0
2,919,978	+				-0.2
2,919,978	+				+0.4
2,919,993	+				+0.4
2,920,004	+				+1.1
2,920,005	-				+0.2
2,920,050	+				-1.3
2,920,050	+				+0.4
2,920,051	-				+1.4
2,920,051	-				-0.7
2,920,051	-				+0.1
2,920,078	+				+0.0
2,920,078	+				-0.1
2,920,078	+				-1.0
2,920,079	-				+0.2
2,920,079	-				-2.6
2,920,079	-				+1.5
2,920,085	+				-0.8
2,920,089	+				+0.7
2,920,089	+				+0.2
2,920,089	+				+0.3
2,920,090	-				-0.1
2,920,090	-				+0.2
2,920,090	-				+1.4
2,920,090	-				-2.1
2,920,110	+				-0.6
2,920,110	+				-0.8
2,920,110	+				-2.0
2,920,110	+				-0.2
2,920,110	+				-2.2
2,920,110	+				-0.4
2,920,111	-				-0.5
2,920,114	+				-1.0
2,920,114	+				-2.5
2,920,114	+				-1.4
2,920,114	+				-0.1
2,920,114	+				-0.4
2,920,114	+				-1.1
2,920,114	+				+0.9
2,920,114	+				+1.8
2,920,114	+				-0.7
2,920,114	+				+0.4
2,920,114	+				-0.4
2,920,115	-				-0.3
2,920,115	-				-1.6
2,920,115	-				-1.1
2,920,115	-				-1.2
2,920,115	-				+0.5
2,920,115	-				+0.7
2,920,115	-				+0.3
2,920,115	-				+0.6
2,920,115	-				-0.3
2,920,115	-				-1.0
2,920,115	-				-0.9
2,920,115	-				+1.2
2,920,115	-				+1.4
2,920,115	-				+0.3
2,920,115	-				+0.4
2,920,115	-				+1.0
2,920,115	-				+0.8
2,920,115	-				+0.8
2,920,115	-				+0.8
2,920,131	+				+0.6
2,920,172	+				-1.0
2,920,172	+				+0.7
2,920,172	+				+1.1
2,920,172	+				-0.7
2,920,173	-				+0.5
2,920,173	-				-0.3
2,920,173	-				-0.3
2,920,205	-				-2.6
2,920,205	-				-0.3
2,920,215	+				-1.6
2,920,215	+				-1.0
2,920,215	+				+0.2
2,920,216	-				-0.3
2,920,216	-				+2.7
2,920,216	-				-1.6
2,920,220	+				+0.9
2,920,220	+				-0.7
2,920,221	-				-0.4
2,920,226	+				-1.6
2,920,226	+				+0.3
2,920,227	-				-0.3
2,920,237	+				+0.5
2,920,244	+				-0.0
2,920,244	+				+0.4
2,920,252	+				+1.1
2,920,253	-				-0.3
2,920,257	+				+0.6
2,920,320	+		Sama_2425	0.13	-0.4
2,920,361	+		Sama_2425	0.20	-1.1
2,920,362	-		Sama_2425	0.20	+1.2
2,920,364	+		Sama_2425	0.21	-0.4
2,920,365	-		Sama_2425	0.21	-1.0
2,920,402	-		Sama_2425	0.27	+1.4
2,920,411	+		Sama_2425	0.29	+1.1
2,920,411	+		Sama_2425	0.29	+0.7
2,920,411	+		Sama_2425	0.29	+0.1
2,920,411	+		Sama_2425	0.29	-0.9
2,920,411	+		Sama_2425	0.29	-0.2
2,920,411	+		Sama_2425	0.29	+0.1
2,920,412	-		Sama_2425	0.29	-0.6
2,920,412	-		Sama_2425	0.29	-2.7
2,920,412	-		Sama_2425	0.29	-0.4
2,920,412	-		Sama_2425	0.29	-2.2
2,920,412	-		Sama_2425	0.29	-0.7
2,920,412	-		Sama_2425	0.29	+0.7
2,920,417	-		Sama_2425	0.30	-0.7
2,920,417	-		Sama_2425	0.30	-2.5
2,920,417	-		Sama_2425	0.30	+0.1
2,920,429	+		Sama_2425	0.32	+1.7
2,920,429	+		Sama_2425	0.32	-0.4
2,920,429	+		Sama_2425	0.32	+0.2
2,920,451	+		Sama_2425	0.36	+0.0
2,920,451	+		Sama_2425	0.36	+0.3
2,920,452	-		Sama_2425	0.36	-0.9
2,920,526	+		Sama_2425	0.49	-1.6
2,920,527	-		Sama_2425	0.49	-2.8
2,920,527	-		Sama_2425	0.49	-0.2
2,920,588	+		Sama_2425	0.60	-0.3
2,920,588	+		Sama_2425	0.60	+0.9
2,920,598	+		Sama_2425	0.61	+2.0
2,920,618	+		Sama_2425	0.65	+2.0
2,920,619	-		Sama_2425	0.65	+1.4
2,920,619	-		Sama_2425	0.65	-1.5
2,920,622	-		Sama_2425	0.65	-0.2
2,920,671	+		Sama_2425	0.74	+0.6
2,920,692	+		Sama_2425	0.78	-2.1
2,920,706	+		Sama_2425	0.80	-0.0
2,920,758	+		Sama_2425	0.89	+0.5
2,920,759	-		Sama_2425	0.89	-0.7
2,920,794	+				+0.5
2,920,795	-				-0.7
2,920,795	-				+0.1
2,920,796	+				-1.5
2,920,796	+				-0.1
2,920,797	-				+0.3
2,920,797	-				-0.4
2,920,818	+				-0.0
2,920,818	+				-1.4
2,920,818	+				+0.3
2,920,818	+				+0.4
2,920,819	-				-2.3
2,920,842	+				-0.6
2,920,843	-				-0.3
2,920,847	+				+1.1
2,920,847	+				-1.6
2,920,870	-				+0.6
2,920,870	-				+0.3
2,920,870	-				+1.0
2,920,937	+				-0.6
2,920,937	+				-1.9
2,920,938	-				+0.7
2,920,938	-				-0.9
2,920,938	-				+0.5
2,920,938	-				-0.8
2,920,963	-				-1.1
2,920,972	+				-0.8
2,920,972	+				-0.5
2,920,973	-				-0.3
2,920,973	-				-0.7
2,921,009	-				+1.5
2,921,024	-		Sama_2426	0.11	-0.5
2,921,024	-		Sama_2426	0.11	-1.3
2,921,053	-		Sama_2426	0.14	+1.2
2,921,096	-		Sama_2426	0.18	+0.3
2,921,118	+		Sama_2426	0.20	+1.7
2,921,119	-		Sama_2426	0.20	+0.4
2,921,166	-		Sama_2426	0.24	+0.6
2,921,176	-		Sama_2426	0.25	+0.6
2,921,176	-		Sama_2426	0.25	-0.9
2,921,176	-		Sama_2426	0.25	+0.6
2,921,176	-		Sama_2426	0.25	+0.6
2,921,176	-		Sama_2426	0.25	-0.4
2,921,180	-		Sama_2426	0.26	+0.1
2,921,311	-		Sama_2426	0.38	+0.4
2,921,311	-		Sama_2426	0.38	+1.3
2,921,392	+		Sama_2426	0.45	-0.4
2,921,402	-		Sama_2426	0.46	+0.4
2,921,474	-		Sama_2426	0.53	+0.3
2,921,550	-		Sama_2426	0.60	-2.2
2,921,663	-		Sama_2426	0.70	-0.7
2,921,663	-		Sama_2426	0.70	-0.7
2,921,663	-		Sama_2426	0.70	-0.3
2,921,722	+		Sama_2426	0.76	-0.2
2,921,728	+		Sama_2426	0.76	+1.3
2,921,729	-		Sama_2426	0.76	-0.3