Strain Fitness in Shewanella amazonensis SB2B around Sama_2405

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
2,888,200	+		Sama_2404	0.24	-1.0
2,888,200	+		Sama_2404	0.24	-0.5
2,888,200	+		Sama_2404	0.24	-0.1
2,888,200	+		Sama_2404	0.24	-0.1
2,888,200	+		Sama_2404	0.24	-0.5
2,888,201	-		Sama_2404	0.24	-1.7
2,888,201	-		Sama_2404	0.24	+1.0
2,888,201	-		Sama_2404	0.24	+1.0
2,888,202	+		Sama_2404	0.24	+0.6
2,888,202	+		Sama_2404	0.24	+1.9
2,888,202	+		Sama_2404	0.24	+0.3
2,888,203	-		Sama_2404	0.24	-1.4
2,888,349	+		Sama_2404	0.36	-0.4
2,888,350	-		Sama_2404	0.36	+1.6
2,888,373	+		Sama_2404	0.38	+0.4
2,888,427	+		Sama_2404	0.42	+1.5
2,888,652	+		Sama_2404	0.61	-0.1
2,888,652	+		Sama_2404	0.61	-0.3
2,888,652	+		Sama_2404	0.61	-2.7
2,888,805	-		Sama_2404	0.73	+0.5
2,888,805	-		Sama_2404	0.73	-3.0
2,888,805	-		Sama_2404	0.73	-0.8
2,888,818	-		Sama_2404	0.74	-0.5
2,888,859	-		Sama_2404	0.78	-0.3
2,888,956	+		Sama_2404	0.86	+0.2
2,888,956	+		Sama_2404	0.86	+0.4
2,888,956	+		Sama_2404	0.86	+2.2
2,888,982	+		Sama_2404	0.88	+0.6
2,889,114	+				-0.8
2,889,114	+				-0.8
2,889,115	-				-0.6
2,889,154	+				+0.8
2,889,154	+				+0.1
2,889,154	+				+3.8
2,889,155	-				-1.4
2,889,164	+				-1.0
2,889,166	+				-2.4
2,889,166	+				+0.8
2,889,166	+				+0.4
2,889,166	+				-0.1
2,889,166	+				-0.6
2,889,167	-				+0.9
2,889,167	-				+0.8
2,889,167	-				+0.3
2,889,169	+				+0.5
2,889,169	+				-0.2
2,889,169	+				+0.6
2,889,170	-				+0.4
2,889,170	-				-0.7
2,889,170	-				+0.6
2,889,170	-				-2.5
2,889,180	-				-2.1
2,889,229	+				+1.8
2,889,230	-				-2.4
2,889,230	-				-0.5
2,889,230	-				-0.4
2,889,249	-				-0.0
2,889,249	-				-0.5
2,889,354	+				+0.7
2,889,355	-				-0.0
2,889,418	+		Sama_2405	0.10	-0.7
2,889,419	-		Sama_2405	0.10	+0.4
2,889,433	-		Sama_2405	0.11	+0.6
2,889,452	+		Sama_2405	0.12	+0.9
2,889,467	+		Sama_2405	0.12	-0.7
2,889,508	-		Sama_2405	0.14	-0.4
2,889,550	-		Sama_2405	0.16	+1.0
2,889,651	+		Sama_2405	0.20	-0.0
2,889,673	+		Sama_2405	0.21	+0.7
2,889,694	-		Sama_2405	0.22	-1.0
2,889,850	+		Sama_2405	0.29	-0.7
2,889,893	+		Sama_2405	0.31	+0.1
2,889,894	-		Sama_2405	0.31	-1.8
2,889,894	-		Sama_2405	0.31	-0.3
2,889,894	-		Sama_2405	0.31	-0.7
2,889,904	+		Sama_2405	0.32	-0.2
2,889,986	+		Sama_2405	0.35	+1.1
2,889,986	+		Sama_2405	0.35	-0.8
2,889,987	-		Sama_2405	0.35	-1.4
2,890,026	-		Sama_2405	0.37	+0.5
2,890,026	-		Sama_2405	0.37	+0.1
2,890,082	+		Sama_2405	0.40	-1.2
2,890,082	+		Sama_2405	0.40	+0.3
2,890,146	+		Sama_2405	0.42	-0.1
2,890,216	+		Sama_2405	0.45	+0.2
2,890,217	-		Sama_2405	0.46	+0.5
2,890,217	-		Sama_2405	0.46	+0.4
2,890,332	+		Sama_2405	0.51	+0.7
2,890,332	+		Sama_2405	0.51	+0.6
2,890,332	+		Sama_2405	0.51	-0.5
2,890,332	+		Sama_2405	0.51	+0.7
2,890,332	+		Sama_2405	0.51	+0.6
2,890,333	-		Sama_2405	0.51	-1.2
2,890,333	-		Sama_2405	0.51	-0.2
2,890,501	-		Sama_2405	0.58	+0.4
2,890,559	+		Sama_2405	0.61	-0.6
2,890,699	-		Sama_2405	0.67	-1.6
2,890,740	-		Sama_2405	0.69	+0.6
2,890,768	+		Sama_2405	0.70	-2.1
2,890,768	+		Sama_2405	0.70	+0.4
2,890,779	+		Sama_2405	0.70	-0.3
2,890,779	+		Sama_2405	0.70	+0.3
2,890,868	+		Sama_2405	0.74	-0.9
2,890,869	-		Sama_2405	0.74	+1.5
2,890,890	+		Sama_2405	0.75	+0.5
2,890,891	-		Sama_2405	0.75	-2.0
2,890,891	-		Sama_2405	0.75	-0.6
2,890,891	-		Sama_2405	0.75	+1.1
2,890,894	+		Sama_2405	0.76	-0.8
2,890,894	+		Sama_2405	0.76	+0.8
2,890,895	-		Sama_2405	0.76	+0.4
2,890,895	-		Sama_2405	0.76	+0.8
2,890,895	-		Sama_2405	0.76	-1.5
2,890,895	-		Sama_2405	0.76	-0.6
2,890,895	-		Sama_2405	0.76	+0.1
2,890,903	+		Sama_2405	0.76	-0.8
2,890,904	-		Sama_2405	0.76	+0.6
2,890,904	-		Sama_2405	0.76	-0.5
2,890,904	-		Sama_2405	0.76	-0.4
2,890,906	+		Sama_2405	0.76	-0.6
2,890,906	+		Sama_2405	0.76	-0.4
2,890,906	+		Sama_2405	0.76	-1.0
2,890,907	-		Sama_2405	0.76	-2.3
2,890,925	+		Sama_2405	0.77	-0.3
2,890,925	+		Sama_2405	0.77	-0.2
2,890,925	+		Sama_2405	0.77	-2.0
2,890,925	+		Sama_2405	0.77	-0.7
2,890,925	+		Sama_2405	0.77	-0.2
2,890,925	+		Sama_2405	0.77	-0.6
2,890,925	+		Sama_2405	0.77	+0.5
2,890,925	+		Sama_2405	0.77	+1.2
2,890,926	-		Sama_2405	0.77	+0.2
2,890,926	-		Sama_2405	0.77	-0.7
2,890,926	-		Sama_2405	0.77	-0.6
2,890,956	+		Sama_2405	0.78	-0.5
2,890,956	+		Sama_2405	0.78	+0.9
2,890,956	+		Sama_2405	0.78	-0.7
2,890,957	-		Sama_2405	0.78	+0.4
2,890,957	-		Sama_2405	0.78	+2.1
2,890,957	-		Sama_2405	0.78	-1.9
2,890,983	+		Sama_2405	0.79	+0.4
2,890,983	+		Sama_2405	0.79	+0.1
2,890,983	+		Sama_2405	0.79	+0.2
2,890,984	-		Sama_2405	0.80	+1.5
2,890,984	-		Sama_2405	0.80	+0.5
2,891,043	-		Sama_2405	0.82	-0.2
2,891,043	-		Sama_2405	0.82	-0.5
2,891,043	-		Sama_2405	0.82	-1.3
2,891,079	+		Sama_2405	0.84	-0.2
2,891,079	+		Sama_2405	0.84	+0.6
2,891,080	-		Sama_2405	0.84	+1.3
2,891,080	-		Sama_2405	0.84	+1.4
2,891,090	-		Sama_2405	0.84	-1.7
2,891,105	-		Sama_2405	0.85	+0.4
2,891,105	-		Sama_2405	0.85	+0.3
2,891,125	-		Sama_2405	0.86	+0.1
2,891,125	-		Sama_2405	0.86	-1.5
2,891,137	-		Sama_2405	0.86	-1.3
2,891,193	+		Sama_2405	0.89	-1.3
2,891,193	+		Sama_2405	0.89	-1.3
2,891,193	+		Sama_2405	0.89	+0.2
2,891,194	-		Sama_2405	0.89	-0.9
2,891,287	+				-0.2
2,891,288	-				+3.4
2,891,288	-				+0.6
2,891,288	-				-1.9
2,891,299	+				-2.5
2,891,299	+				-1.5
2,891,299	+				-1.3
2,891,299	+				-0.3
2,891,300	-				+0.5
2,891,300	-				-0.2
2,891,300	-				-1.3
2,891,300	-				+3.2
2,891,452	+				-0.4
2,891,452	+				-1.1
2,891,452	+				-1.3
2,891,453	-				+1.5
2,891,453	-				-0.3
2,891,453	-				+0.7
2,891,461	+				-2.0
2,891,519	+				-2.4
2,891,519	+				-1.6
2,891,519	+				-2.6
2,891,520	-				-0.5
2,891,520	-				-2.4
2,891,520	-				+0.8
2,891,523	+				-1.7
2,891,523	+				-2.2
2,891,524	-				-1.1
2,891,527	+				-1.2
2,891,527	+				-1.9
2,891,527	+				-2.1
2,891,527	+				-2.8
2,891,527	+				+0.8
2,891,527	+				-1.7
2,891,528	-				+0.8
2,891,528	-				+0.4
2,891,528	-				-0.5
2,891,528	-				-1.1
2,891,528	-				+0.3
2,891,528	-				-0.4
2,891,531	+				-1.9
2,891,531	+				-1.2
2,891,532	-				-0.1
2,891,536	+				-1.1
2,891,536	+				-1.2
2,891,536	+				-1.3
2,891,537	-				-0.6
2,891,570	-				-0.1
2,891,671	+				-3.0
2,891,671	+				-0.3
2,891,684	-				+0.9
2,891,688	+				+0.1
2,891,689	-				+1.1
2,891,689	-				+1.8
2,891,689	-				+2.7
2,891,699	-				+2.0
2,891,700	+				-1.8
2,891,766	+				-0.3
2,891,840	+				+1.8
2,891,840	+				+0.7
2,891,840	+				+0.7
2,891,841	-				-0.1
2,891,901	+				-0.3
2,891,902	-				+0.1
2,891,902	-				+1.6
2,891,910	+				+1.6
2,891,910	+				+0.7
2,891,911	-				+1.2
2,891,911	-				+1.2
2,891,958	+				-0.4
2,891,958	+				+1.2
2,891,963	+				+0.5
2,891,964	-				+0.1
2,892,006	+		Sama_2406	0.11	+2.7
2,892,006	+		Sama_2406	0.11	-1.8
2,892,007	-		Sama_2406	0.12	+1.2
2,892,007	-		Sama_2406	0.12	+1.4
2,892,007	-		Sama_2406	0.12	+1.1
2,892,007	-		Sama_2406	0.12	-0.1
2,892,010	+		Sama_2406	0.12	+0.2
2,892,011	-		Sama_2406	0.12	+1.5
2,892,011	-		Sama_2406	0.12	+0.9
2,892,112	+		Sama_2406	0.16	+1.0
2,892,113	-		Sama_2406	0.16	+0.5
2,892,147	+		Sama_2406	0.17	+0.8
2,892,147	+		Sama_2406	0.17	+0.9
2,892,147	+		Sama_2406	0.17	+0.2
2,892,147	+		Sama_2406	0.17	+1.2
2,892,147	+		Sama_2406	0.17	+1.2
2,892,147	+		Sama_2406	0.17	+1.0
2,892,148	-		Sama_2406	0.17	-0.3
2,892,148	-		Sama_2406	0.17	+1.6
2,892,148	-		Sama_2406	0.17	+1.8
2,892,148	-		Sama_2406	0.17	+1.6
2,892,148	-		Sama_2406	0.17	+1.9
2,892,148	-		Sama_2406	0.17	+0.1
2,892,148	-		Sama_2406	0.17	+0.7
2,892,150	+		Sama_2406	0.18	+1.5
2,892,150	+		Sama_2406	0.18	+0.8
2,892,362	+		Sama_2406	0.26	+1.9
2,892,365	-		Sama_2406	0.27	+1.4
2,892,365	-		Sama_2406	0.27	+1.6
2,892,397	+		Sama_2406	0.28	+0.8
2,892,397	+		Sama_2406	0.28	+2.4
2,892,397	+		Sama_2406	0.28	+1.4
2,892,397	+		Sama_2406	0.28	+1.5
2,892,398	-		Sama_2406	0.28	+0.2