Strain Fitness in Shewanella amazonensis SB2B around Sama_2376

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
2,852,609	+		Sama_2375	0.33	+1.6
2,852,609	+		Sama_2375	0.33	-1.5
2,852,610	-		Sama_2375	0.33	+0.6
2,852,610	-		Sama_2375	0.33	-1.4
2,852,610	-		Sama_2375	0.33	-0.4
2,852,610	-		Sama_2375	0.33	+0.6
2,852,687	+		Sama_2375	0.38	-0.1
2,852,729	-		Sama_2375	0.41	-0.9
2,852,729	-		Sama_2375	0.41	+0.3
2,852,774	-		Sama_2375	0.44	+0.6
2,852,795	+		Sama_2375	0.46	-0.2
2,852,795	+		Sama_2375	0.46	+1.4
2,852,795	+		Sama_2375	0.46	-0.6
2,852,795	+		Sama_2375	0.46	+1.0
2,852,795	+		Sama_2375	0.46	+0.8
2,852,795	+		Sama_2375	0.46	+0.6
2,852,796	-		Sama_2375	0.46	-0.4
2,852,796	+		Sama_2375	0.46	-0.9
2,852,796	-		Sama_2375	0.46	-0.3
2,852,933	-		Sama_2375	0.55	-1.2
2,852,933	-		Sama_2375	0.55	+0.1
2,852,963	+		Sama_2375	0.57	+1.0
2,852,963	+		Sama_2375	0.57	+0.4
2,852,964	-		Sama_2375	0.58	-1.3
2,852,964	-		Sama_2375	0.58	+1.3
2,852,964	-		Sama_2375	0.58	-1.3
2,852,964	-		Sama_2375	0.58	+0.3
2,852,966	+		Sama_2375	0.58	+1.7
2,852,966	+		Sama_2375	0.58	-0.3
2,852,966	+		Sama_2375	0.58	+0.7
2,852,967	-		Sama_2375	0.58	+0.1
2,852,967	-		Sama_2375	0.58	-0.8
2,852,967	-		Sama_2375	0.58	-0.2
2,852,967	-		Sama_2375	0.58	-0.7
2,852,978	-		Sama_2375	0.59	+0.6
2,852,978	-		Sama_2375	0.59	+1.3
2,853,016	+		Sama_2375	0.61	+0.1
2,853,071	+		Sama_2375	0.65	+1.0
2,853,071	+		Sama_2375	0.65	-0.3
2,853,072	-		Sama_2375	0.65	-1.5
2,853,072	-		Sama_2375	0.65	-0.2
2,853,073	+		Sama_2375	0.65	+0.3
2,853,073	+		Sama_2375	0.65	-2.1
2,853,074	-		Sama_2375	0.65	-0.6
2,853,088	+		Sama_2375	0.66	+0.6
2,853,089	-		Sama_2375	0.66	+0.4
2,853,145	-		Sama_2375	0.70	+0.8
2,853,161	+		Sama_2375	0.71	+0.5
2,853,161	+		Sama_2375	0.71	+1.1
2,853,161	+		Sama_2375	0.71	+0.0
2,853,161	+		Sama_2375	0.71	-0.9
2,853,161	+		Sama_2375	0.71	+0.6
2,853,162	-		Sama_2375	0.71	+1.1
2,853,173	+		Sama_2375	0.72	+0.1
2,853,173	+		Sama_2375	0.72	-0.2
2,853,174	-		Sama_2375	0.72	-0.7
2,853,174	-		Sama_2375	0.72	-0.3
2,853,187	-		Sama_2375	0.73	+0.9
2,853,187	-		Sama_2375	0.73	+1.2
2,853,233	+		Sama_2375	0.76	+1.0
2,853,233	+		Sama_2375	0.76	-1.2
2,853,233	+		Sama_2375	0.76	-3.1
2,853,233	+		Sama_2375	0.76	-1.1
2,853,233	+		Sama_2375	0.76	+1.1
2,853,233	+		Sama_2375	0.76	+0.5
2,853,234	-		Sama_2375	0.76	-2.3
2,853,234	-		Sama_2375	0.76	-1.2
2,853,234	-		Sama_2375	0.76	+0.1
2,853,234	-		Sama_2375	0.76	-1.1
2,853,257	+		Sama_2375	0.78	-0.1
2,853,257	+		Sama_2375	0.78	-1.0
2,853,257	+		Sama_2375	0.78	+0.0
2,853,257	+		Sama_2375	0.78	+0.8
2,853,257	+		Sama_2375	0.78	+1.2
2,853,258	-		Sama_2375	0.78	-0.1
2,853,258	-		Sama_2375	0.78	+0.4
2,853,263	+		Sama_2375	0.78	+1.3
2,853,263	+		Sama_2375	0.78	+1.1
2,853,263	+		Sama_2375	0.78	-1.3
2,853,280	+		Sama_2375	0.80	+0.9
2,853,281	-		Sama_2375	0.80	+1.2
2,853,281	-		Sama_2375	0.80	+0.4
2,853,293	-		Sama_2375	0.80	-1.0
2,853,355	+		Sama_2375	0.85	-1.0
2,853,356	-		Sama_2375	0.85	+1.9
2,853,415	+		Sama_2375	0.89	-1.3
2,853,415	+		Sama_2375	0.89	+0.8
2,853,416	-		Sama_2375	0.89	+0.9
2,853,416	-		Sama_2375	0.89	-1.2
2,853,416	-		Sama_2375	0.89	-0.4
2,853,500	+				+0.3
2,853,500	+				-0.1
2,853,501	-				-0.2
2,853,501	-				-0.4
2,853,501	-				-0.9
2,853,523	+				-1.1
2,853,524	-				+0.1
2,853,524	-				+1.3
2,853,572	+				+1.9
2,853,573	-				+0.8
2,853,590	+				-0.5
2,853,591	-				+1.1
2,853,616	-				-1.1
2,853,616	-				+0.6
2,853,626	-				-0.5
2,853,639	-				-0.6
2,853,639	-				+1.0
2,853,660	+				-1.7
2,853,692	+				-1.0
2,853,692	+				+0.0
2,853,693	-				+0.1
2,853,693	-				-0.4
2,853,693	-				-0.6
2,853,770	+		Sama_2376	0.11	-0.3
2,853,770	+		Sama_2376	0.11	-0.4
2,853,771	-		Sama_2376	0.11	+0.4
2,853,771	-		Sama_2376	0.11	+0.4
2,853,771	-		Sama_2376	0.11	+0.0
2,853,830	+		Sama_2376	0.14	+0.4
2,853,831	-		Sama_2376	0.14	+0.1
2,853,860	+		Sama_2376	0.16	+0.6
2,853,999	-		Sama_2376	0.24	+0.5
2,854,008	-		Sama_2376	0.25	+0.2
2,854,013	+		Sama_2376	0.25	-0.4
2,854,014	-		Sama_2376	0.25	-0.9
2,854,023	+		Sama_2376	0.25	-0.8
2,854,023	+		Sama_2376	0.25	+0.3
2,854,066	+		Sama_2376	0.28	+0.8
2,854,122	+		Sama_2376	0.31	+0.1
2,854,123	-		Sama_2376	0.31	+1.4
2,854,123	-		Sama_2376	0.31	-0.4
2,854,125	+		Sama_2376	0.31	+0.2
2,854,126	-		Sama_2376	0.31	+0.1
2,854,137	+		Sama_2376	0.32	-0.4
2,854,218	+		Sama_2376	0.37	-0.4
2,854,218	+		Sama_2376	0.37	+1.5
2,854,218	+		Sama_2376	0.37	-0.4
2,854,219	-		Sama_2376	0.37	-1.6
2,854,219	-		Sama_2376	0.37	-0.6
2,854,229	+		Sama_2376	0.37	-0.7
2,854,229	+		Sama_2376	0.37	-1.4
2,854,229	+		Sama_2376	0.37	+0.4
2,854,230	-		Sama_2376	0.37	-0.1
2,854,278	-		Sama_2376	0.40	-0.6
2,854,298	+		Sama_2376	0.41	-0.2
2,854,298	+		Sama_2376	0.41	-0.1
2,854,298	+		Sama_2376	0.41	+1.9
2,854,298	+		Sama_2376	0.41	+0.2
2,854,298	+		Sama_2376	0.41	+0.8
2,854,298	+		Sama_2376	0.41	-0.2
2,854,298	+		Sama_2376	0.41	+0.2
2,854,299	-		Sama_2376	0.41	+0.8
2,854,299	-		Sama_2376	0.41	+0.8
2,854,299	-		Sama_2376	0.41	+3.9
2,854,423	-		Sama_2376	0.48	-0.3
2,854,423	-		Sama_2376	0.48	+0.3
2,854,573	-		Sama_2376	0.57	+1.4
2,854,573	-		Sama_2376	0.57	-0.6
2,854,573	-		Sama_2376	0.57	-1.0
2,854,579	+		Sama_2376	0.57	+1.4
2,854,580	-		Sama_2376	0.57	-1.2
2,854,615	-		Sama_2376	0.59	+0.8
2,854,615	-		Sama_2376	0.59	-0.2
2,854,670	+		Sama_2376	0.62	-0.7
2,854,670	-		Sama_2376	0.62	+0.2
2,854,670	+		Sama_2376	0.62	-0.5
2,854,671	-		Sama_2376	0.62	+0.4
2,854,671	-		Sama_2376	0.62	-1.0
2,854,671	-		Sama_2376	0.62	-2.3
2,854,671	-		Sama_2376	0.62	-0.1
2,854,671	-		Sama_2376	0.62	+0.6
2,854,671	-		Sama_2376	0.62	-0.3
2,854,760	-		Sama_2376	0.68	-0.1
2,854,887	+		Sama_2376	0.75	+0.7
2,854,887	+		Sama_2376	0.75	+0.0
2,854,887	+		Sama_2376	0.75	+0.8
2,854,887	+		Sama_2376	0.75	-1.3
2,854,888	-		Sama_2376	0.75	+2.0
2,854,888	-		Sama_2376	0.75	-0.3
2,854,888	-		Sama_2376	0.75	-0.2
2,854,888	-		Sama_2376	0.75	-1.0
2,854,888	-		Sama_2376	0.75	-0.8
2,854,912	-		Sama_2376	0.76	+1.7
2,854,930	+		Sama_2376	0.77	+0.8
2,854,930	+		Sama_2376	0.77	+0.9
2,854,930	+		Sama_2376	0.77	-0.6
2,854,931	-		Sama_2376	0.77	+0.2
2,854,931	-		Sama_2376	0.77	-1.6
2,854,931	-		Sama_2376	0.77	-3.6
2,854,931	-		Sama_2376	0.77	-0.5
2,854,931	-		Sama_2376	0.77	+0.4
2,854,931	-		Sama_2376	0.77	+0.3
2,854,979	+		Sama_2376	0.80	-0.8
2,855,042	+		Sama_2376	0.84	+1.0
2,855,043	-		Sama_2376	0.84	+0.4
2,855,045	+		Sama_2376	0.84	-0.6
2,855,045	+		Sama_2376	0.84	+0.3
2,855,046	-		Sama_2376	0.84	+4.3
2,855,046	-		Sama_2376	0.84	-0.8
2,855,046	-		Sama_2376	0.84	+1.0
2,855,046	-		Sama_2376	0.84	-0.9
2,855,072	+		Sama_2376	0.85	+0.3
2,855,072	+		Sama_2376	0.85	-1.9
2,855,072	+		Sama_2376	0.85	-2.1
2,855,103	+		Sama_2376	0.87	-0.2
2,855,103	+		Sama_2376	0.87	+0.1
2,855,103	+		Sama_2376	0.87	+0.5
2,855,103	+		Sama_2376	0.87	-1.4
2,855,104	-		Sama_2376	0.87	+0.6
2,855,145	+		Sama_2376	0.90	-1.6
2,855,145	+		Sama_2376	0.90	-0.9
2,855,145	+		Sama_2376	0.90	-0.7
2,855,146	-		Sama_2376	0.90	+0.3
2,855,147	+		Sama_2376	0.90	+1.3
2,855,236	+				-1.5
2,855,287	-				+1.6
2,855,293	+				+0.9
2,855,293	+				+0.8
2,855,294	-				-0.6
2,855,294	-				-0.8
2,855,324	-				+0.2
2,855,324	-				+1.8
2,855,334	-				-0.2
2,855,415	+				-2.2
2,855,415	+				-1.9
2,855,419	+				-1.0
2,855,480	+		Sama_2377	0.13	-2.3
2,855,504	+		Sama_2377	0.16	-0.4
2,855,505	-		Sama_2377	0.16	-0.2
2,855,535	-		Sama_2377	0.20	+0.3
2,855,535	-		Sama_2377	0.20	-1.9
2,855,561	+		Sama_2377	0.23	-0.1
2,855,562	-		Sama_2377	0.23	+1.4
2,855,601	+		Sama_2377	0.28	-1.0
2,855,601	+		Sama_2377	0.28	-1.6
2,855,670	-		Sama_2377	0.36	-0.8
2,855,723	-		Sama_2377	0.42	+0.2
2,855,737	+		Sama_2377	0.44	-0.8
2,855,737	+		Sama_2377	0.44	-1.0
2,855,737	+		Sama_2377	0.44	+1.2
2,855,737	+		Sama_2377	0.44	+1.9
2,855,738	-		Sama_2377	0.44	-1.0
2,856,052	+		Sama_2377	0.82	-1.9
2,856,052	+		Sama_2377	0.82	-3.0
2,856,053	-		Sama_2377	0.82	-2.2
2,856,149	-				-1.2
2,856,159	+				+0.5
2,856,160	-				+0.6
2,856,199	+				-1.7
2,856,199	+				+0.5
2,856,199	+				+0.1
2,856,199	+				+0.1
2,856,199	+				-0.4
2,856,199	+				-1.8
2,856,199	+				+1.0
2,856,200	-				-3.1
2,856,200	-				+0.5
2,856,200	-				-0.2
2,856,200	-				-0.7
2,856,219	-				+0.8
2,856,219	-				+1.8
2,856,241	-				+0.7
2,856,286	+		Sama_2378	0.11	-0.4
2,856,286	+		Sama_2378	0.11	+0.2