Strain Fitness in Shewanella amazonensis SB2B around Sama_2350

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
2,819,137	+				-0.1
2,819,137	+				+0.1
2,819,138	-				-1.9
2,819,171	+				-0.7
2,819,172	-				-0.1
2,819,192	-				+0.6
2,819,192	-				-2.2
2,819,192	-				-0.2
2,819,215	-				+0.0
2,819,282	+				-1.8
2,819,283	-				+0.8
2,819,315	-				-0.5
2,819,383	+				-0.3
2,819,384	-				-2.9
2,819,387	+				-0.8
2,819,388	-				-1.2
2,819,388	-				+0.5
2,819,388	-				+1.8
2,819,389	+				+0.2
2,819,394	-				-0.6
2,819,453	+				+0.4
2,819,540	+				+0.6
2,819,542	+				+0.2
2,819,543	-				-0.7
2,819,652	+				-0.8
2,819,653	-				-1.7
2,819,659	+				+1.0
2,819,659	+				-0.2
2,819,659	+				+0.8
2,819,661	+				-0.8
2,819,662	-				-1.8
2,819,662	-				-0.1
2,819,683	+				-0.0
2,819,701	+				+1.5
2,819,806	-				-0.8
2,819,885	-				-0.1
2,819,888	+				+0.2
2,819,973	-				+0.9
2,820,128	-				-3.9
2,820,201	+				-1.8
2,820,284	+				-4.2
2,820,351	-				-3.2
2,820,460	+		Sama_2350	0.12	-3.0
2,820,461	-		Sama_2350	0.12	-2.1
2,820,461	-		Sama_2350	0.12	-1.1
2,820,461	-		Sama_2350	0.12	-1.8
2,820,461	-		Sama_2350	0.12	-1.2
2,820,461	-		Sama_2350	0.12	-3.6
2,820,464	+		Sama_2350	0.13	-0.8
2,820,465	-		Sama_2350	0.13	-3.5
2,820,465	-		Sama_2350	0.13	-2.4
2,820,465	-		Sama_2350	0.13	-3.8
2,820,465	-		Sama_2350	0.13	-3.2
2,820,465	-		Sama_2350	0.13	-4.1
2,820,530	-		Sama_2350	0.14	-1.7
2,820,580	-		Sama_2350	0.16	-3.1
2,820,683	-		Sama_2350	0.18	-3.3
2,820,717	-		Sama_2350	0.19	-2.6
2,820,767	-		Sama_2350	0.20	-3.1
2,820,767	-		Sama_2350	0.20	-2.2
2,820,767	-		Sama_2350	0.20	-1.6
2,820,767	-		Sama_2350	0.20	-3.2
2,820,767	-		Sama_2350	0.20	-3.2
2,820,768	+		Sama_2350	0.20	-4.9
2,820,768	+		Sama_2350	0.20	-2.2
2,820,769	-		Sama_2350	0.20	-2.9
2,820,769	-		Sama_2350	0.20	-1.6
2,820,769	-		Sama_2350	0.20	-3.9
2,820,769	-		Sama_2350	0.20	-2.5
2,820,769	-		Sama_2350	0.20	-4.1
2,820,769	-		Sama_2350	0.20	-1.8
2,820,842	-		Sama_2350	0.22	-2.1
2,820,842	-		Sama_2350	0.22	-0.8
2,820,901	+		Sama_2350	0.24	-4.1
2,820,901	+		Sama_2350	0.24	-1.6
2,820,902	-		Sama_2350	0.24	-4.1
2,820,902	-		Sama_2350	0.24	-3.2
2,820,902	-		Sama_2350	0.24	-3.0
2,820,902	-		Sama_2350	0.24	-4.1
2,820,902	-		Sama_2350	0.24	-0.2
2,820,902	-		Sama_2350	0.24	-2.8
2,820,929	+		Sama_2350	0.24	-4.1
2,821,044	-		Sama_2350	0.27	-3.1
2,821,044	-		Sama_2350	0.27	-4.0
2,821,063	+		Sama_2350	0.28	-1.6
2,821,064	-		Sama_2350	0.28	-1.6
2,821,064	-		Sama_2350	0.28	-3.6
2,821,067	+		Sama_2350	0.28	-1.9
2,821,068	-		Sama_2350	0.28	-3.9
2,821,076	-		Sama_2350	0.28	-3.2
2,821,184	-		Sama_2350	0.31	-3.7
2,821,216	-		Sama_2350	0.32	-3.6
2,821,216	-		Sama_2350	0.32	-3.2
2,821,462	+		Sama_2350	0.38	-1.9
2,821,463	-		Sama_2350	0.38	-2.2
2,821,465	+		Sama_2350	0.38	-3.4
2,821,465	+		Sama_2350	0.38	-4.7
2,821,466	-		Sama_2350	0.38	-3.8
2,821,474	+		Sama_2350	0.39	-1.8
2,821,475	-		Sama_2350	0.39	-3.6
2,821,475	-		Sama_2350	0.39	-3.5
2,821,605	+		Sama_2350	0.42	-3.5
2,821,605	+		Sama_2350	0.42	-2.6
2,821,663	+		Sama_2350	0.43	-3.1
2,821,664	-		Sama_2350	0.43	-3.5
2,821,664	-		Sama_2350	0.43	-3.1
2,821,664	-		Sama_2350	0.43	-4.2
2,821,705	+		Sama_2350	0.44	-1.6
2,821,706	-		Sama_2350	0.45	-1.8
2,821,797	+		Sama_2350	0.47	-3.3
2,821,797	+		Sama_2350	0.47	-2.5
2,821,797	+		Sama_2350	0.47	-3.2
2,821,798	-		Sama_2350	0.47	-3.5
2,821,798	-		Sama_2350	0.47	-2.9
2,821,798	-		Sama_2350	0.47	-2.6
2,821,798	-		Sama_2350	0.47	-1.6
2,821,798	-		Sama_2350	0.47	-1.4
2,821,798	-		Sama_2350	0.47	-1.8
2,821,798	-		Sama_2350	0.47	-2.8
2,821,909	+		Sama_2350	0.50	-2.9
2,821,909	+		Sama_2350	0.50	-3.7
2,821,909	+		Sama_2350	0.50	-2.5
2,821,910	-		Sama_2350	0.50	-4.0
2,821,910	-		Sama_2350	0.50	-3.5
2,821,910	-		Sama_2350	0.50	-2.7
2,821,910	-		Sama_2350	0.50	-2.1
2,821,910	-		Sama_2350	0.50	-1.6
2,821,947	-		Sama_2350	0.51	-2.9
2,821,968	-		Sama_2350	0.51	-3.3
2,822,109	-		Sama_2350	0.55	-1.6
2,822,109	-		Sama_2350	0.55	-4.0
2,822,214	+		Sama_2350	0.58	-3.0
2,822,214	+		Sama_2350	0.58	-1.9
2,822,214	+		Sama_2350	0.58	-2.4
2,822,215	-		Sama_2350	0.58	-3.4
2,822,215	-		Sama_2350	0.58	-2.6
2,822,215	-		Sama_2350	0.58	-2.1
2,822,215	-		Sama_2350	0.58	-1.4
2,822,457	-		Sama_2350	0.64	-2.4
2,822,611	+		Sama_2350	0.68	-3.2
2,822,612	-		Sama_2350	0.68	-3.3
2,822,612	-		Sama_2350	0.68	-4.8
2,822,612	-		Sama_2350	0.68	-1.2
2,822,617	+		Sama_2350	0.68	-3.6
2,822,661	-		Sama_2350	0.69	-1.9
2,822,691	+		Sama_2350	0.70	-0.2
2,822,696	-		Sama_2350	0.70	-4.0
2,822,704	-		Sama_2350	0.70	-3.3
2,822,704	-		Sama_2350	0.70	-5.1
2,822,704	-		Sama_2350	0.70	-3.2
2,822,737	+		Sama_2350	0.71	-1.8
2,822,786	+		Sama_2350	0.72	-2.8
2,822,787	-		Sama_2350	0.72	-3.9
2,822,787	-		Sama_2350	0.72	+0.2
2,822,787	-		Sama_2350	0.72	-3.0
2,822,787	-		Sama_2350	0.72	-4.2
2,822,787	-		Sama_2350	0.72	-2.8
2,822,789	+		Sama_2350	0.72	-3.1
2,822,790	-		Sama_2350	0.72	-3.9
2,822,808	+		Sama_2350	0.73	-2.9
2,822,808	+		Sama_2350	0.73	-2.6
2,822,809	-		Sama_2350	0.73	-2.0
2,822,809	-		Sama_2350	0.73	-2.1
2,822,962	+		Sama_2350	0.77	-2.9
2,822,963	-		Sama_2350	0.77	-2.9
2,823,001	+		Sama_2350	0.78	-1.8
2,823,002	-		Sama_2350	0.78	-3.8
2,823,021	+		Sama_2350	0.78	-3.2
2,823,022	-		Sama_2350	0.78	-3.9
2,823,027	+		Sama_2350	0.79	-1.9
2,823,027	+		Sama_2350	0.79	-3.7
2,823,028	-		Sama_2350	0.79	-2.7
2,823,028	-		Sama_2350	0.79	-3.7
2,823,094	+		Sama_2350	0.80	-1.6
2,823,094	+		Sama_2350	0.80	-1.7
2,823,096	+		Sama_2350	0.80	-3.8
2,823,096	+		Sama_2350	0.80	-1.9
2,823,096	+		Sama_2350	0.80	-1.1
2,823,097	-		Sama_2350	0.80	-4.8
2,823,097	-		Sama_2350	0.80	-1.4
2,823,265	+		Sama_2350	0.85	-2.1
2,823,388	+		Sama_2350	0.88	-4.1
2,823,455	+		Sama_2350	0.90	-2.8
2,823,456	-		Sama_2350	0.90	-2.3
2,823,456	-		Sama_2350	0.90	-4.0
2,823,456	-		Sama_2350	0.90	-1.9
2,823,456	-		Sama_2350	0.90	-2.6
2,823,525	+				-2.4
2,823,525	+				-3.5
2,823,525	+				-3.2
2,823,525	+				-2.8
2,823,525	+				-2.9
2,823,525	+				-1.9
2,823,525	+				-3.3
2,823,525	+				-3.0
2,823,525	+				-3.2
2,823,525	+				-3.3
2,823,526	-				-2.5
2,823,526	-				-2.2
2,823,526	-				-1.2
2,823,526	-				-2.4
2,823,526	-				-1.6
2,823,526	-				-2.9
2,823,528	+				-3.2
2,823,528	+				-1.0
2,823,528	+				-2.2
2,823,529	-				-3.1
2,823,529	-				-3.5
2,823,529	-				-2.9
2,823,529	-				-4.1
2,823,590	-				-2.6
2,823,682	-				-3.2
2,823,682	-				-4.0
2,823,751	+				-2.2
2,823,753	+				-3.7
2,823,753	+				-1.2
2,823,753	+				-3.4
2,823,754	-				-3.5
2,823,876	-				+2.6
2,823,884	+				-3.8
2,823,888	+				-1.8
2,823,908	+				-1.7
2,823,909	-				+0.8
2,823,911	+				-3.5
2,823,911	+				-4.1
2,823,914	-				+2.9
2,823,930	+				-1.7
2,823,930	+				-3.4
2,823,930	+				-1.6
2,823,930	+				-2.2
2,823,970	-				-0.5
2,823,970	-				+0.2
2,823,970	-				-0.1
2,823,973	-				-0.0
2,824,086	+				+1.1
2,824,093	+				-1.1
2,824,128	+				-1.6
2,824,220	+		Sama_2351	0.13	-0.3
2,824,220	+		Sama_2351	0.13	-2.6
2,824,271	+		Sama_2351	0.16	-2.4
2,824,271	+		Sama_2351	0.16	+1.3
2,824,299	-		Sama_2351	0.18	-0.4
2,824,307	-		Sama_2351	0.19	-0.6
2,824,328	+		Sama_2351	0.20	-2.2
2,824,329	-		Sama_2351	0.20	-1.6
2,824,329	-		Sama_2351	0.20	-1.3
2,824,349	+		Sama_2351	0.21	+2.3
2,824,462	-		Sama_2351	0.29	-1.5
2,824,469	+		Sama_2351	0.29	+0.0
2,824,469	+		Sama_2351	0.29	+1.5
2,824,500	+		Sama_2351	0.31	-0.5
2,824,500	+		Sama_2351	0.31	-0.4
2,824,658	+		Sama_2351	0.42	-1.6
2,824,658	+		Sama_2351	0.42	-0.2
2,824,658	+		Sama_2351	0.42	-0.6
2,824,700	+		Sama_2351	0.45	-0.1
2,824,701	-		Sama_2351	0.45	+0.1
2,824,702	+		Sama_2351	0.45	-1.0
2,824,743	+		Sama_2351	0.48	-1.5
2,824,744	-		Sama_2351	0.48	-0.9
2,824,775	-		Sama_2351	0.50	+0.2