Strain Fitness in Shewanella amazonensis SB2B around Sama_2340

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
2,805,717	-		Sama_2338	0.66	-0.1
2,805,725	+		Sama_2338	0.68	-0.3
2,805,725	+		Sama_2338	0.68	-1.3
2,805,726	-		Sama_2338	0.68	+0.1
2,805,759	+		Sama_2338	0.75	-0.2
2,805,759	+		Sama_2338	0.75	+1.4
2,805,876	-				-1.8
2,805,878	+				+1.2
2,805,882	+				-1.8
2,805,883	-				+1.5
2,805,932	+				+0.7
2,805,959	-				-0.3
2,806,001	+		Sama_2339	0.12	-0.9
2,806,003	+		Sama_2339	0.13	-0.4
2,806,041	+		Sama_2339	0.20	+0.6
2,806,041	+		Sama_2339	0.20	-0.6
2,806,042	-		Sama_2339	0.20	+2.1
2,806,042	-		Sama_2339	0.20	-1.0
2,806,042	-		Sama_2339	0.20	+0.3
2,806,087	+		Sama_2339	0.28	-0.0
2,806,087	+		Sama_2339	0.28	-0.6
2,806,089	+		Sama_2339	0.28	+0.2
2,806,090	-		Sama_2339	0.28	+1.1
2,806,104	+		Sama_2339	0.31	-0.8
2,806,105	-		Sama_2339	0.31	-0.6
2,806,109	-		Sama_2339	0.32	+1.2
2,806,109	-		Sama_2339	0.32	+0.4
2,806,187	+		Sama_2339	0.46	-1.7
2,806,217	+		Sama_2339	0.51	+0.4
2,806,217	+		Sama_2339	0.51	-0.5
2,806,217	+		Sama_2339	0.51	+1.6
2,806,286	+		Sama_2339	0.64	-0.3
2,806,287	-		Sama_2339	0.64	-2.0
2,806,287	-		Sama_2339	0.64	+3.0
2,806,287	-		Sama_2339	0.64	+1.0
2,806,287	-		Sama_2339	0.64	+0.4
2,806,385	+		Sama_2339	0.82	-0.7
2,806,385	+		Sama_2339	0.82	+0.3
2,806,386	-		Sama_2339	0.82	+0.7
2,806,386	-		Sama_2339	0.82	-0.3
2,806,390	+		Sama_2339	0.83	+0.7
2,806,390	+		Sama_2339	0.83	+0.1
2,806,390	+		Sama_2339	0.83	+0.3
2,806,390	+		Sama_2339	0.83	-0.4
2,806,390	+		Sama_2339	0.83	+0.8
2,806,391	-		Sama_2339	0.83	+0.2
2,806,391	-		Sama_2339	0.83	-2.8
2,806,391	-		Sama_2339	0.83	-0.0
2,806,391	-		Sama_2339	0.83	-1.4
2,806,391	-		Sama_2339	0.83	-1.8
2,806,460	+				-0.7
2,806,461	-				+2.8
2,806,560	-				-0.3
2,806,569	+				-0.6
2,806,569	+				+2.3
2,806,570	-				-0.3
2,806,570	-				-0.8
2,806,590	+				-1.1
2,806,692	+		Sama_2340	0.10	+1.2
2,806,692	+		Sama_2340	0.10	-0.6
2,806,692	+		Sama_2340	0.10	-1.7
2,806,693	-		Sama_2340	0.10	+1.4
2,806,693	-		Sama_2340	0.10	-0.6
2,806,693	-		Sama_2340	0.10	-0.3
2,806,697	-		Sama_2340	0.11	-0.1
2,806,697	-		Sama_2340	0.11	+0.4
2,806,697	-		Sama_2340	0.11	+0.0
2,806,697	-		Sama_2340	0.11	-2.1
2,806,707	-		Sama_2340	0.12	-0.8
2,806,849	-		Sama_2340	0.26	-0.7
2,806,849	-		Sama_2340	0.26	+0.8
2,806,853	-		Sama_2340	0.26	-1.3
2,806,853	-		Sama_2340	0.26	-0.3
2,806,930	+		Sama_2340	0.34	+0.1
2,806,931	-		Sama_2340	0.34	-0.7
2,806,931	-		Sama_2340	0.34	-0.3
2,806,960	+		Sama_2340	0.37	-0.6
2,806,961	-		Sama_2340	0.37	-0.6
2,806,961	-		Sama_2340	0.37	-0.9
2,806,964	+		Sama_2340	0.38	-0.5
2,806,964	+		Sama_2340	0.38	-1.3
2,806,965	-		Sama_2340	0.38	-0.3
2,806,965	-		Sama_2340	0.38	+1.2
2,806,965	-		Sama_2340	0.38	-1.8
2,806,965	-		Sama_2340	0.38	-3.0
2,806,977	+		Sama_2340	0.39	-0.9
2,806,978	-		Sama_2340	0.39	-0.0
2,806,981	+		Sama_2340	0.39	-0.4
2,806,982	-		Sama_2340	0.39	-1.7
2,806,982	-		Sama_2340	0.39	-1.0
2,806,982	-		Sama_2340	0.39	+0.4
2,807,003	-		Sama_2340	0.41	-0.1
2,807,003	-		Sama_2340	0.41	-0.6
2,807,013	+		Sama_2340	0.42	-2.3
2,807,013	+		Sama_2340	0.42	-1.6
2,807,013	+		Sama_2340	0.42	-0.3
2,807,083	+		Sama_2340	0.49	+0.3
2,807,084	-		Sama_2340	0.50	+1.7
2,807,084	-		Sama_2340	0.50	-0.7
2,807,086	-		Sama_2340	0.50	+0.4
2,807,086	-		Sama_2340	0.50	+0.5
2,807,086	-		Sama_2340	0.50	-0.1
2,807,108	-		Sama_2340	0.52	+0.9
2,807,110	-		Sama_2340	0.52	+2.5
2,807,110	-		Sama_2340	0.52	+0.3
2,807,154	+		Sama_2340	0.57	+0.3
2,807,154	+		Sama_2340	0.57	-0.4
2,807,154	+		Sama_2340	0.57	-0.8
2,807,155	-		Sama_2340	0.57	+0.5
2,807,155	-		Sama_2340	0.57	-0.6
2,807,155	-		Sama_2340	0.57	-0.5
2,807,158	+		Sama_2340	0.57	-0.3
2,807,158	+		Sama_2340	0.57	+0.2
2,807,158	+		Sama_2340	0.57	+0.0
2,807,159	-		Sama_2340	0.57	-1.5
2,807,159	-		Sama_2340	0.57	-2.8
2,807,159	-		Sama_2340	0.57	-1.2
2,807,238	+		Sama_2340	0.65	-0.4
2,807,269	+		Sama_2340	0.68	-1.1
2,807,270	-		Sama_2340	0.68	-1.2
2,807,270	-		Sama_2340	0.68	+0.1
2,807,302	+		Sama_2340	0.71	+0.3
2,807,302	+		Sama_2340	0.71	-1.2
2,807,302	+		Sama_2340	0.71	+0.4
2,807,302	+		Sama_2340	0.71	-0.2
2,807,302	+		Sama_2340	0.71	-2.7
2,807,303	-		Sama_2340	0.71	-2.4
2,807,303	-		Sama_2340	0.71	+0.2
2,807,303	-		Sama_2340	0.71	+0.9
2,807,303	-		Sama_2340	0.71	-2.3
2,807,303	-		Sama_2340	0.71	+0.0
2,807,303	-		Sama_2340	0.71	+1.0
2,807,303	-		Sama_2340	0.71	-1.4
2,807,303	-		Sama_2340	0.71	+1.2
2,807,303	-		Sama_2340	0.71	-1.6
2,807,304	+		Sama_2340	0.72	-0.1
2,807,304	+		Sama_2340	0.72	-0.9
2,807,304	+		Sama_2340	0.72	+0.0
2,807,304	+		Sama_2340	0.72	-0.6
2,807,304	+		Sama_2340	0.72	+0.4
2,807,304	+		Sama_2340	0.72	-1.0
2,807,305	-		Sama_2340	0.72	+0.8
2,807,305	-		Sama_2340	0.72	+0.5
2,807,305	-		Sama_2340	0.72	+0.4
2,807,305	-		Sama_2340	0.72	-2.0
2,807,305	-		Sama_2340	0.72	+1.1
2,807,358	+		Sama_2340	0.77	+0.2
2,807,359	-		Sama_2340	0.77	+1.6
2,807,413	+		Sama_2340	0.82	+1.6
2,807,468	-		Sama_2340	0.88	-0.1
2,807,468	-		Sama_2340	0.88	-0.3
2,807,524	+				+1.4
2,807,525	-				-0.2
2,807,549	+				-0.9
2,807,594	+				+0.4
2,807,601	-				-0.7
2,807,716	-		Sama_2341	0.13	-0.4
2,807,716	-		Sama_2341	0.13	+0.1
2,807,750	-		Sama_2341	0.19	+0.9
2,807,763	+		Sama_2341	0.21	+1.0
2,807,764	-		Sama_2341	0.21	+0.7
2,807,831	-		Sama_2341	0.32	+0.7
2,807,876	-		Sama_2341	0.39	+0.9
2,807,982	+		Sama_2341	0.56	+1.6
2,807,982	+		Sama_2341	0.56	+0.2
2,807,982	+		Sama_2341	0.56	+2.5
2,807,983	-		Sama_2341	0.56	-0.6
2,807,983	-		Sama_2341	0.56	-0.4
2,808,030	+		Sama_2341	0.64	+1.3
2,808,031	-		Sama_2341	0.64	+1.1
2,808,031	-		Sama_2341	0.64	-2.4
2,808,031	-		Sama_2341	0.64	-0.7
2,808,066	+		Sama_2341	0.70	+1.8
2,808,066	+		Sama_2341	0.70	+1.8
2,808,084	-		Sama_2341	0.72	+1.1
2,808,087	-		Sama_2341	0.73	+4.1
2,808,100	+		Sama_2341	0.75	+2.7
2,808,101	-		Sama_2341	0.75	+0.2
2,808,101	-		Sama_2341	0.75	+0.6
2,808,101	-		Sama_2341	0.75	+0.5
2,808,101	-		Sama_2341	0.75	+2.4
2,808,146	+		Sama_2341	0.82	+4.0
2,808,147	-		Sama_2341	0.83	-0.3
2,808,152	+		Sama_2341	0.83	+1.4
2,808,153	-		Sama_2341	0.84	+3.2
2,808,258	+				+0.9
2,808,293	-				+1.2
2,808,342	+				+0.3
2,808,421	+				+0.7
2,808,436	+				-0.7
2,808,469	+				-0.2
2,808,469	+				+0.2
2,808,469	+				-0.9
2,808,469	+				+0.8
2,808,469	+				-0.8
2,808,469	+				+0.4
2,808,470	-				+0.8
2,808,470	-				+0.1
2,808,470	-				-0.8
2,808,470	-				-0.6
2,808,470	-				+0.6
2,808,470	-				-1.1
2,808,529	+		Sama_2342	0.11	-1.2
2,808,529	+		Sama_2342	0.11	+0.3