Strain Fitness in Shewanella amazonensis SB2B around Sama_2229

Experiment: L-Threonine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_2228 and Sama_2229 are separated by 124 nucleotidesSama_2229 and Sama_2230 overlap by 4 nucleotidesSama_2230 and Sama_2231 are separated by 139 nucleotides Sama_2228: Sama_2228 - decaheme cytochrome c (RefSeq), at 2,691,526 to 2,693,793 _2228 Sama_2229: Sama_2229 - hypothetical protein (RefSeq), at 2,693,918 to 2,694,610 _2229 Sama_2230: Sama_2230 - hypothetical protein (RefSeq), at 2,694,607 to 2,695,344 _2230 Sama_2231: Sama_2231 - glucokinase (EC 2.7.1.2) (from data), at 2,695,484 to 2,696,383 _2231 Position (kb) 2693 2694 2695Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2692.926 kb on + strand, within Sama_2228at 2692.943 kb on + strand, within Sama_2228at 2693.011 kb on + strand, within Sama_2228at 2693.011 kb on + strand, within Sama_2228at 2693.012 kb on - strand, within Sama_2228at 2693.033 kb on + strand, within Sama_2228at 2693.033 kb on + strand, within Sama_2228at 2693.034 kb on - strand, within Sama_2228at 2693.077 kb on + strand, within Sama_2228at 2693.087 kb on + strand, within Sama_2228at 2693.088 kb on - strand, within Sama_2228at 2693.088 kb on - strand, within Sama_2228at 2693.106 kb on + strand, within Sama_2228at 2693.110 kb on + strand, within Sama_2228at 2693.110 kb on + strand, within Sama_2228at 2693.111 kb on - strand, within Sama_2228at 2693.111 kb on - strand, within Sama_2228at 2693.113 kb on + strand, within Sama_2228at 2693.113 kb on + strand, within Sama_2228at 2693.113 kb on + strand, within Sama_2228at 2693.113 kb on + strand, within Sama_2228at 2693.114 kb on - strand, within Sama_2228at 2693.114 kb on - strand, within Sama_2228at 2693.197 kb on - strand, within Sama_2228at 2693.211 kb on + strand, within Sama_2228at 2693.211 kb on + strand, within Sama_2228at 2693.265 kb on + strand, within Sama_2228at 2693.266 kb on - strand, within Sama_2228at 2693.266 kb on - strand, within Sama_2228at 2693.266 kb on - strand, within Sama_2228at 2693.287 kb on + strand, within Sama_2228at 2693.288 kb on - strand, within Sama_2228at 2693.299 kb on + strand, within Sama_2228at 2693.299 kb on + strand, within Sama_2228at 2693.300 kb on - strand, within Sama_2228at 2693.300 kb on - strand, within Sama_2228at 2693.318 kb on - strand, within Sama_2228at 2693.318 kb on - strand, within Sama_2228at 2693.381 kb on - strand, within Sama_2228at 2693.381 kb on - strand, within Sama_2228at 2693.447 kb on - strand, within Sama_2228at 2693.454 kb on + strand, within Sama_2228at 2693.454 kb on + strand, within Sama_2228at 2693.454 kb on + strand, within Sama_2228at 2693.455 kb on - strand, within Sama_2228at 2693.504 kb on + strand, within Sama_2228at 2693.504 kb on + strand, within Sama_2228at 2693.504 kb on + strand, within Sama_2228at 2693.504 kb on + strand, within Sama_2228at 2693.504 kb on + strand, within Sama_2228at 2693.505 kb on - strand, within Sama_2228at 2693.505 kb on - strand, within Sama_2228at 2693.505 kb on - strand, within Sama_2228at 2693.505 kb on - strand, within Sama_2228at 2693.505 kb on - strand, within Sama_2228at 2693.505 kb on - strand, within Sama_2228at 2693.505 kb on - strand, within Sama_2228at 2693.559 kb on + strand, within Sama_2228at 2693.590 kb on + strandat 2693.590 kb on + strandat 2693.590 kb on + strandat 2693.591 kb on - strandat 2693.591 kb on - strandat 2693.591 kb on - strandat 2693.591 kb on - strandat 2693.591 kb on - strandat 2693.591 kb on - strandat 2693.591 kb on - strandat 2693.619 kb on + strandat 2693.619 kb on + strandat 2693.620 kb on - strandat 2693.677 kb on + strandat 2693.677 kb on + strandat 2693.677 kb on + strandat 2693.677 kb on + strandat 2693.749 kb on - strandat 2693.755 kb on + strandat 2693.766 kb on + strandat 2693.791 kb on + strandat 2693.887 kb on + strandat 2693.887 kb on + strandat 2693.893 kb on + strandat 2693.893 kb on + strandat 2693.894 kb on - strandat 2693.894 kb on - strandat 2693.906 kb on + strandat 2693.929 kb on + strandat 2693.929 kb on + strandat 2693.929 kb on + strandat 2693.930 kb on - strandat 2693.930 kb on - strandat 2694.014 kb on - strand, within Sama_2229at 2694.014 kb on - strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.015 kb on + strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.016 kb on - strand, within Sama_2229at 2694.025 kb on - strand, within Sama_2229at 2694.037 kb on + strand, within Sama_2229at 2694.226 kb on + strand, within Sama_2229at 2694.226 kb on + strand, within Sama_2229at 2694.226 kb on + strand, within Sama_2229at 2694.227 kb on - strand, within Sama_2229at 2694.229 kb on + strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.230 kb on - strand, within Sama_2229at 2694.259 kb on + strand, within Sama_2229at 2694.302 kb on + strand, within Sama_2229at 2694.303 kb on - strand, within Sama_2229at 2694.303 kb on - strand, within Sama_2229at 2694.359 kb on - strand, within Sama_2229at 2694.359 kb on - strand, within Sama_2229at 2694.359 kb on - strand, within Sama_2229at 2694.457 kb on + strand, within Sama_2229at 2694.458 kb on - strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.461 kb on + strand, within Sama_2229at 2694.462 kb on - strand, within Sama_2229at 2694.462 kb on - strand, within Sama_2229at 2694.462 kb on - strand, within Sama_2229at 2694.536 kb on + strand, within Sama_2229at 2694.536 kb on + strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.537 kb on - strand, within Sama_2229at 2694.540 kb on - strand, within Sama_2229at 2694.540 kb on - strand, within Sama_2229at 2694.647 kb on + strandat 2694.647 kb on + strandat 2694.647 kb on + strandat 2694.647 kb on + strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.648 kb on - strandat 2694.691 kb on + strand, within Sama_2230at 2694.787 kb on - strand, within Sama_2230at 2694.787 kb on - strand, within Sama_2230at 2694.787 kb on - strand, within Sama_2230at 2694.812 kb on - strand, within Sama_2230at 2694.812 kb on - strand, within Sama_2230at 2694.839 kb on - strand, within Sama_2230at 2694.839 kb on - strand, within Sama_2230at 2694.887 kb on - strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.956 kb on + strand, within Sama_2230at 2694.957 kb on - strand, within Sama_2230at 2694.957 kb on - strand, within Sama_2230at 2694.957 kb on - strand, within Sama_2230at 2695.060 kb on + strand, within Sama_2230at 2695.061 kb on - strand, within Sama_2230at 2695.111 kb on + strand, within Sama_2230at 2695.149 kb on - strand, within Sama_2230at 2695.171 kb on + strand, within Sama_2230at 2695.222 kb on + strand, within Sama_2230at 2695.222 kb on + strand, within Sama_2230at 2695.223 kb on - strand, within Sama_2230at 2695.320 kb on - strandat 2695.349 kb on - strandat 2695.360 kb on + strandat 2695.383 kb on - strandat 2695.537 kb on - strandat 2695.537 kb on - strandat 2695.547 kb on + strandat 2695.548 kb on - strandat 2695.548 kb on - strandat 2695.581 kb on + strand, within Sama_2231at 2695.581 kb on + strand, within Sama_2231at 2695.581 kb on + strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231at 2695.582 kb on - strand, within Sama_2231

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
remove
2,692,926 + Sama_2228 0.62 +2.7
2,692,943 + Sama_2228 0.62 +0.9
2,693,011 + Sama_2228 0.65 +0.9
2,693,011 + Sama_2228 0.65 +0.6
2,693,012 - Sama_2228 0.66 +1.9
2,693,033 + Sama_2228 0.66 -0.4
2,693,033 + Sama_2228 0.66 +0.2
2,693,034 - Sama_2228 0.66 +0.7
2,693,077 + Sama_2228 0.68 -0.2
2,693,087 + Sama_2228 0.69 +2.7
2,693,088 - Sama_2228 0.69 -0.0
2,693,088 - Sama_2228 0.69 +1.2
2,693,106 + Sama_2228 0.70 -0.2
2,693,110 + Sama_2228 0.70 -0.5
2,693,110 + Sama_2228 0.70 +0.9
2,693,111 - Sama_2228 0.70 +1.7
2,693,111 - Sama_2228 0.70 +1.1
2,693,113 + Sama_2228 0.70 +0.2
2,693,113 + Sama_2228 0.70 -1.2
2,693,113 + Sama_2228 0.70 +0.9
2,693,113 + Sama_2228 0.70 +1.2
2,693,114 - Sama_2228 0.70 -1.1
2,693,114 - Sama_2228 0.70 -0.4
2,693,197 - Sama_2228 0.74 -0.5
2,693,211 + Sama_2228 0.74 -0.2
2,693,211 + Sama_2228 0.74 -0.0
2,693,265 + Sama_2228 0.77 -2.8
2,693,266 - Sama_2228 0.77 +0.3
2,693,266 - Sama_2228 0.77 +0.8
2,693,266 - Sama_2228 0.77 -0.4
2,693,287 + Sama_2228 0.78 +0.4
2,693,288 - Sama_2228 0.78 +0.7
2,693,299 + Sama_2228 0.78 -0.1
2,693,299 + Sama_2228 0.78 -1.7
2,693,300 - Sama_2228 0.78 -0.7
2,693,300 - Sama_2228 0.78 -0.8
2,693,318 - Sama_2228 0.79 -0.2
2,693,318 - Sama_2228 0.79 +0.3
2,693,381 - Sama_2228 0.82 -1.3
2,693,381 - Sama_2228 0.82 +1.3
2,693,447 - Sama_2228 0.85 -0.0
2,693,454 + Sama_2228 0.85 +0.2
2,693,454 + Sama_2228 0.85 +1.2
2,693,454 + Sama_2228 0.85 +0.6
2,693,455 - Sama_2228 0.85 -1.4
2,693,504 + Sama_2228 0.87 -0.3
2,693,504 + Sama_2228 0.87 +0.9
2,693,504 + Sama_2228 0.87 -0.1
2,693,504 + Sama_2228 0.87 -1.1
2,693,504 + Sama_2228 0.87 -1.3
2,693,505 - Sama_2228 0.87 -0.5
2,693,505 - Sama_2228 0.87 +0.5
2,693,505 - Sama_2228 0.87 +0.0
2,693,505 - Sama_2228 0.87 -1.8
2,693,505 - Sama_2228 0.87 +0.1
2,693,505 - Sama_2228 0.87 -1.0
2,693,505 - Sama_2228 0.87 -0.4
2,693,559 + Sama_2228 0.90 -0.3
2,693,590 + +0.3
2,693,590 + +0.2
2,693,590 + -1.4
2,693,591 - +0.8
2,693,591 - +0.4
2,693,591 - -0.7
2,693,591 - -1.7
2,693,591 - +0.3
2,693,591 - -1.0
2,693,591 - +0.5
2,693,619 + +3.5
2,693,619 + -2.3
2,693,620 - +0.5
2,693,677 + -1.0
2,693,677 + +1.0
2,693,677 + +1.2
2,693,677 + +0.1
2,693,749 - -1.6
2,693,755 + +1.1
2,693,766 + +0.9
2,693,791 + +2.2
2,693,887 + +0.5
2,693,887 + +0.3
2,693,893 + +0.9
2,693,893 + -0.9
2,693,894 - +0.3
2,693,894 - -0.6
2,693,906 + -1.5
2,693,929 + +2.5
2,693,929 + +0.6
2,693,929 + +1.1
2,693,930 - -1.6
2,693,930 - +0.6
2,694,014 - Sama_2229 0.14 +3.3
2,694,014 - Sama_2229 0.14 -2.4
2,694,015 + Sama_2229 0.14 +0.7
2,694,015 + Sama_2229 0.14 -1.3
2,694,015 + Sama_2229 0.14 +2.0
2,694,015 + Sama_2229 0.14 -0.3
2,694,015 + Sama_2229 0.14 +2.0
2,694,015 + Sama_2229 0.14 -1.4
2,694,015 + Sama_2229 0.14 -0.8
2,694,015 + Sama_2229 0.14 +0.7
2,694,015 + Sama_2229 0.14 +1.6
2,694,015 + Sama_2229 0.14 -1.3
2,694,016 - Sama_2229 0.14 -0.5
2,694,016 - Sama_2229 0.14 +1.3
2,694,016 - Sama_2229 0.14 -0.9
2,694,016 - Sama_2229 0.14 +0.6
2,694,016 - Sama_2229 0.14 +0.6
2,694,016 - Sama_2229 0.14 +1.3
2,694,016 - Sama_2229 0.14 -2.7
2,694,025 - Sama_2229 0.15 -1.4
2,694,037 + Sama_2229 0.17 +0.2
2,694,226 + Sama_2229 0.44 -0.3
2,694,226 + Sama_2229 0.44 +0.5
2,694,226 + Sama_2229 0.44 -0.5
2,694,227 - Sama_2229 0.45 +1.0
2,694,229 + Sama_2229 0.45 +1.7
2,694,230 - Sama_2229 0.45 +0.6
2,694,230 - Sama_2229 0.45 +2.7
2,694,230 - Sama_2229 0.45 -0.6
2,694,230 - Sama_2229 0.45 +1.7
2,694,230 - Sama_2229 0.45 -0.8
2,694,259 + Sama_2229 0.49 +1.6
2,694,302 + Sama_2229 0.55 +1.6
2,694,303 - Sama_2229 0.56 -1.8
2,694,303 - Sama_2229 0.56 +0.1
2,694,359 - Sama_2229 0.64 -0.1
2,694,359 - Sama_2229 0.64 +4.2
2,694,359 - Sama_2229 0.64 -0.4
2,694,457 + Sama_2229 0.78 +1.4
2,694,458 - Sama_2229 0.78 -0.5
2,694,461 + Sama_2229 0.78 +0.1
2,694,461 + Sama_2229 0.78 -0.9
2,694,461 + Sama_2229 0.78 -0.8
2,694,461 + Sama_2229 0.78 -0.2
2,694,461 + Sama_2229 0.78 -0.2
2,694,462 - Sama_2229 0.78 +1.2
2,694,462 - Sama_2229 0.78 -2.0
2,694,462 - Sama_2229 0.78 -0.3
2,694,536 + Sama_2229 0.89 -0.4
2,694,536 + Sama_2229 0.89 +2.6
2,694,537 - Sama_2229 0.89 -2.4
2,694,537 - Sama_2229 0.89 -1.4
2,694,537 - Sama_2229 0.89 +0.3
2,694,537 - Sama_2229 0.89 -0.1
2,694,540 - Sama_2229 0.90 +1.4
2,694,540 - Sama_2229 0.90 -1.5
2,694,647 + -1.5
2,694,647 + -2.1
2,694,647 + +0.2
2,694,647 + -1.1
2,694,648 - -0.5
2,694,648 - -0.7
2,694,648 - +1.1
2,694,648 - -0.5
2,694,648 - +0.4
2,694,691 + Sama_2230 0.11 -1.0
2,694,787 - Sama_2230 0.24 -1.6
2,694,787 - Sama_2230 0.24 -3.2
2,694,787 - Sama_2230 0.24 -0.1
2,694,812 - Sama_2230 0.28 +0.4
2,694,812 - Sama_2230 0.28 -1.6
2,694,839 - Sama_2230 0.31 -0.7
2,694,839 - Sama_2230 0.31 -0.9
2,694,887 - Sama_2230 0.38 -0.7
2,694,956 + Sama_2230 0.47 +2.1
2,694,956 + Sama_2230 0.47 -0.6
2,694,956 + Sama_2230 0.47 -0.9
2,694,956 + Sama_2230 0.47 -0.0
2,694,956 + Sama_2230 0.47 +0.7
2,694,957 - Sama_2230 0.47 -0.1
2,694,957 - Sama_2230 0.47 -1.5
2,694,957 - Sama_2230 0.47 +1.6
2,695,060 + Sama_2230 0.61 -1.2
2,695,061 - Sama_2230 0.62 +0.3
2,695,111 + Sama_2230 0.68 -2.9
2,695,149 - Sama_2230 0.73 -0.4
2,695,171 + Sama_2230 0.76 +0.1
2,695,222 + Sama_2230 0.83 -1.1
2,695,222 + Sama_2230 0.83 -1.1
2,695,223 - Sama_2230 0.83 -0.5
2,695,320 - +1.0
2,695,349 - +0.4
2,695,360 + -0.1
2,695,383 - -2.4
2,695,537 - +0.3
2,695,537 - -0.3
2,695,547 + -0.6
2,695,548 - +2.2
2,695,548 - -0.0
2,695,581 + Sama_2231 0.11 -2.0
2,695,581 + Sama_2231 0.11 +0.3
2,695,581 + Sama_2231 0.11 +3.4
2,695,582 - Sama_2231 0.11 +0.4
2,695,582 - Sama_2231 0.11 +0.4
2,695,582 - Sama_2231 0.11 -2.0
2,695,582 - Sama_2231 0.11 -2.5
2,695,582 - Sama_2231 0.11 -0.0
2,695,582 - Sama_2231 0.11 +0.5

Or see this region's nucleotide sequence