Strain Fitness in Shewanella amazonensis SB2B around Sama_2229

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
2,692,926	+		Sama_2228	0.62	+2.7
2,692,943	+		Sama_2228	0.62	+0.9
2,693,011	+		Sama_2228	0.65	+0.9
2,693,011	+		Sama_2228	0.65	+0.6
2,693,012	-		Sama_2228	0.66	+1.9
2,693,033	+		Sama_2228	0.66	-0.4
2,693,033	+		Sama_2228	0.66	+0.2
2,693,034	-		Sama_2228	0.66	+0.7
2,693,077	+		Sama_2228	0.68	-0.2
2,693,087	+		Sama_2228	0.69	+2.7
2,693,088	-		Sama_2228	0.69	-0.0
2,693,088	-		Sama_2228	0.69	+1.2
2,693,106	+		Sama_2228	0.70	-0.2
2,693,110	+		Sama_2228	0.70	-0.5
2,693,110	+		Sama_2228	0.70	+0.9
2,693,111	-		Sama_2228	0.70	+1.7
2,693,111	-		Sama_2228	0.70	+1.1
2,693,113	+		Sama_2228	0.70	+0.2
2,693,113	+		Sama_2228	0.70	-1.2
2,693,113	+		Sama_2228	0.70	+0.9
2,693,113	+		Sama_2228	0.70	+1.2
2,693,114	-		Sama_2228	0.70	-1.1
2,693,114	-		Sama_2228	0.70	-0.4
2,693,197	-		Sama_2228	0.74	-0.5
2,693,211	+		Sama_2228	0.74	-0.2
2,693,211	+		Sama_2228	0.74	-0.0
2,693,265	+		Sama_2228	0.77	-2.8
2,693,266	-		Sama_2228	0.77	+0.3
2,693,266	-		Sama_2228	0.77	+0.8
2,693,266	-		Sama_2228	0.77	-0.4
2,693,287	+		Sama_2228	0.78	+0.4
2,693,288	-		Sama_2228	0.78	+0.7
2,693,299	+		Sama_2228	0.78	-0.1
2,693,299	+		Sama_2228	0.78	-1.7
2,693,300	-		Sama_2228	0.78	-0.7
2,693,300	-		Sama_2228	0.78	-0.8
2,693,318	-		Sama_2228	0.79	-0.2
2,693,318	-		Sama_2228	0.79	+0.3
2,693,381	-		Sama_2228	0.82	-1.3
2,693,381	-		Sama_2228	0.82	+1.3
2,693,447	-		Sama_2228	0.85	-0.0
2,693,454	+		Sama_2228	0.85	+0.2
2,693,454	+		Sama_2228	0.85	+1.2
2,693,454	+		Sama_2228	0.85	+0.6
2,693,455	-		Sama_2228	0.85	-1.4
2,693,504	+		Sama_2228	0.87	-0.3
2,693,504	+		Sama_2228	0.87	+0.9
2,693,504	+		Sama_2228	0.87	-0.1
2,693,504	+		Sama_2228	0.87	-1.1
2,693,504	+		Sama_2228	0.87	-1.3
2,693,505	-		Sama_2228	0.87	-0.5
2,693,505	-		Sama_2228	0.87	+0.5
2,693,505	-		Sama_2228	0.87	+0.0
2,693,505	-		Sama_2228	0.87	-1.8
2,693,505	-		Sama_2228	0.87	+0.1
2,693,505	-		Sama_2228	0.87	-1.0
2,693,505	-		Sama_2228	0.87	-0.4
2,693,559	+		Sama_2228	0.90	-0.3
2,693,590	+				+0.3
2,693,590	+				+0.2
2,693,590	+				-1.4
2,693,591	-				+0.8
2,693,591	-				+0.4
2,693,591	-				-0.7
2,693,591	-				-1.7
2,693,591	-				+0.3
2,693,591	-				-1.0
2,693,591	-				+0.5
2,693,619	+				+3.5
2,693,619	+				-2.3
2,693,620	-				+0.5
2,693,677	+				-1.0
2,693,677	+				+1.0
2,693,677	+				+1.2
2,693,677	+				+0.1
2,693,749	-				-1.6
2,693,755	+				+1.1
2,693,766	+				+0.9
2,693,791	+				+2.2
2,693,887	+				+0.5
2,693,887	+				+0.3
2,693,893	+				+0.9
2,693,893	+				-0.9
2,693,894	-				+0.3
2,693,894	-				-0.6
2,693,906	+				-1.5
2,693,929	+				+2.5
2,693,929	+				+0.6
2,693,929	+				+1.1
2,693,930	-				-1.6
2,693,930	-				+0.6
2,694,014	-		Sama_2229	0.14	+3.3
2,694,014	-		Sama_2229	0.14	-2.4
2,694,015	+		Sama_2229	0.14	+0.7
2,694,015	+		Sama_2229	0.14	-1.3
2,694,015	+		Sama_2229	0.14	+2.0
2,694,015	+		Sama_2229	0.14	-0.3
2,694,015	+		Sama_2229	0.14	+2.0
2,694,015	+		Sama_2229	0.14	-1.4
2,694,015	+		Sama_2229	0.14	-0.8
2,694,015	+		Sama_2229	0.14	+0.7
2,694,015	+		Sama_2229	0.14	+1.6
2,694,015	+		Sama_2229	0.14	-1.3
2,694,016	-		Sama_2229	0.14	-0.5
2,694,016	-		Sama_2229	0.14	+1.3
2,694,016	-		Sama_2229	0.14	-0.9
2,694,016	-		Sama_2229	0.14	+0.6
2,694,016	-		Sama_2229	0.14	+0.6
2,694,016	-		Sama_2229	0.14	+1.3
2,694,016	-		Sama_2229	0.14	-2.7
2,694,025	-		Sama_2229	0.15	-1.4
2,694,037	+		Sama_2229	0.17	+0.2
2,694,226	+		Sama_2229	0.44	-0.3
2,694,226	+		Sama_2229	0.44	+0.5
2,694,226	+		Sama_2229	0.44	-0.5
2,694,227	-		Sama_2229	0.45	+1.0
2,694,229	+		Sama_2229	0.45	+1.7
2,694,230	-		Sama_2229	0.45	+0.6
2,694,230	-		Sama_2229	0.45	+2.7
2,694,230	-		Sama_2229	0.45	-0.6
2,694,230	-		Sama_2229	0.45	+1.7
2,694,230	-		Sama_2229	0.45	-0.8
2,694,259	+		Sama_2229	0.49	+1.6
2,694,302	+		Sama_2229	0.55	+1.6
2,694,303	-		Sama_2229	0.56	-1.8
2,694,303	-		Sama_2229	0.56	+0.1
2,694,359	-		Sama_2229	0.64	-0.1
2,694,359	-		Sama_2229	0.64	+4.2
2,694,359	-		Sama_2229	0.64	-0.4
2,694,457	+		Sama_2229	0.78	+1.4
2,694,458	-		Sama_2229	0.78	-0.5
2,694,461	+		Sama_2229	0.78	+0.1
2,694,461	+		Sama_2229	0.78	-0.9
2,694,461	+		Sama_2229	0.78	-0.8
2,694,461	+		Sama_2229	0.78	-0.2
2,694,461	+		Sama_2229	0.78	-0.2
2,694,462	-		Sama_2229	0.78	+1.2
2,694,462	-		Sama_2229	0.78	-2.0
2,694,462	-		Sama_2229	0.78	-0.3
2,694,536	+		Sama_2229	0.89	-0.4
2,694,536	+		Sama_2229	0.89	+2.6
2,694,537	-		Sama_2229	0.89	-2.4
2,694,537	-		Sama_2229	0.89	-1.4
2,694,537	-		Sama_2229	0.89	+0.3
2,694,537	-		Sama_2229	0.89	-0.1
2,694,540	-		Sama_2229	0.90	+1.4
2,694,540	-		Sama_2229	0.90	-1.5
2,694,647	+				-1.5
2,694,647	+				-2.1
2,694,647	+				+0.2
2,694,647	+				-1.1
2,694,648	-				-0.5
2,694,648	-				-0.7
2,694,648	-				+1.1
2,694,648	-				-0.5
2,694,648	-				+0.4
2,694,691	+		Sama_2230	0.11	-1.0
2,694,787	-		Sama_2230	0.24	-1.6
2,694,787	-		Sama_2230	0.24	-3.2
2,694,787	-		Sama_2230	0.24	-0.1
2,694,812	-		Sama_2230	0.28	+0.4
2,694,812	-		Sama_2230	0.28	-1.6
2,694,839	-		Sama_2230	0.31	-0.7
2,694,839	-		Sama_2230	0.31	-0.9
2,694,887	-		Sama_2230	0.38	-0.7
2,694,956	+		Sama_2230	0.47	+2.1
2,694,956	+		Sama_2230	0.47	-0.6
2,694,956	+		Sama_2230	0.47	-0.9
2,694,956	+		Sama_2230	0.47	-0.0
2,694,956	+		Sama_2230	0.47	+0.7
2,694,957	-		Sama_2230	0.47	-0.1
2,694,957	-		Sama_2230	0.47	-1.5
2,694,957	-		Sama_2230	0.47	+1.6
2,695,060	+		Sama_2230	0.61	-1.2
2,695,061	-		Sama_2230	0.62	+0.3
2,695,111	+		Sama_2230	0.68	-2.9
2,695,149	-		Sama_2230	0.73	-0.4
2,695,171	+		Sama_2230	0.76	+0.1
2,695,222	+		Sama_2230	0.83	-1.1
2,695,222	+		Sama_2230	0.83	-1.1
2,695,223	-		Sama_2230	0.83	-0.5
2,695,320	-				+1.0
2,695,349	-				+0.4
2,695,360	+				-0.1
2,695,383	-				-2.4
2,695,537	-				+0.3
2,695,537	-				-0.3
2,695,547	+				-0.6
2,695,548	-				+2.2
2,695,548	-				-0.0
2,695,581	+		Sama_2231	0.11	-2.0
2,695,581	+		Sama_2231	0.11	+0.3
2,695,581	+		Sama_2231	0.11	+3.4
2,695,582	-		Sama_2231	0.11	+0.4
2,695,582	-		Sama_2231	0.11	+0.4
2,695,582	-		Sama_2231	0.11	-2.0
2,695,582	-		Sama_2231	0.11	-2.5
2,695,582	-		Sama_2231	0.11	-0.0
2,695,582	-		Sama_2231	0.11	+0.5