Strain Fitness in Shewanella amazonensis SB2B around Sama_1529

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1527 and Sama_1528 are separated by 90 nucleotidesSama_1528 and Sama_1529 are separated by 113 nucleotidesSama_1529 and Sama_1530 are separated by 36 nucleotides Sama_1527: Sama_1527 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,857,000 to 1,858,064 _1527 Sama_1528: Sama_1528 - GntR family transcriptional regulator (RefSeq), at 1,858,155 to 1,858,826 _1528 Sama_1529: Sama_1529 - fatty aldehyde dehydrogenase (RefSeq), at 1,858,940 to 1,860,487 _1529 Sama_1530: Sama_1530 - hydroxyproline-2-epimerase (RefSeq), at 1,860,524 to 1,861,525 _1530 Position (kb) 1858 1859 1860 1861Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1858.057 kb on + strandat 1858.069 kb on - strandat 1858.131 kb on - strandat 1858.131 kb on - strandat 1858.154 kb on - strandat 1858.207 kb on - strandat 1858.207 kb on - strandat 1858.207 kb on - strandat 1858.207 kb on - strandat 1858.207 kb on - strandat 1858.329 kb on - strand, within Sama_1528at 1858.331 kb on - strand, within Sama_1528at 1858.331 kb on - strand, within Sama_1528at 1858.347 kb on - strand, within Sama_1528at 1858.404 kb on - strand, within Sama_1528at 1858.404 kb on - strand, within Sama_1528at 1858.683 kb on - strand, within Sama_1528at 1858.695 kb on - strand, within Sama_1528at 1858.771 kb on - strandat 1858.771 kb on - strandat 1858.777 kb on - strandat 1858.791 kb on - strandat 1858.839 kb on - strandat 1858.840 kb on + strandat 1858.884 kb on + strandat 1858.885 kb on - strandat 1858.885 kb on - strandat 1858.972 kb on + strandat 1858.972 kb on + strandat 1858.973 kb on - strandat 1858.973 kb on - strandat 1858.973 kb on - strandat 1859.002 kb on + strandat 1859.003 kb on - strandat 1859.003 kb on - strandat 1859.017 kb on + strandat 1859.018 kb on - strandat 1859.018 kb on - strandat 1859.027 kb on - strandat 1859.161 kb on + strand, within Sama_1529at 1859.180 kb on + strand, within Sama_1529at 1859.180 kb on + strand, within Sama_1529at 1859.181 kb on - strand, within Sama_1529at 1859.181 kb on - strand, within Sama_1529at 1859.181 kb on - strand, within Sama_1529at 1859.285 kb on + strand, within Sama_1529at 1859.286 kb on - strand, within Sama_1529at 1859.286 kb on - strand, within Sama_1529at 1859.423 kb on + strand, within Sama_1529at 1859.440 kb on + strand, within Sama_1529at 1859.441 kb on - strand, within Sama_1529at 1859.468 kb on + strand, within Sama_1529at 1859.510 kb on + strand, within Sama_1529at 1859.511 kb on - strand, within Sama_1529at 1859.511 kb on - strand, within Sama_1529at 1859.519 kb on + strand, within Sama_1529at 1859.532 kb on + strand, within Sama_1529at 1859.532 kb on + strand, within Sama_1529at 1859.532 kb on + strand, within Sama_1529at 1859.533 kb on - strand, within Sama_1529at 1859.533 kb on - strand, within Sama_1529at 1859.533 kb on - strand, within Sama_1529at 1859.533 kb on - strand, within Sama_1529at 1859.533 kb on - strand, within Sama_1529at 1859.581 kb on + strand, within Sama_1529at 1859.700 kb on + strand, within Sama_1529at 1859.700 kb on + strand, within Sama_1529at 1859.701 kb on - strand, within Sama_1529at 1859.701 kb on - strand, within Sama_1529at 1859.759 kb on - strand, within Sama_1529at 1859.759 kb on - strand, within Sama_1529at 1859.944 kb on + strand, within Sama_1529at 1860.027 kb on - strand, within Sama_1529at 1860.027 kb on - strand, within Sama_1529at 1860.027 kb on - strand, within Sama_1529at 1860.056 kb on + strand, within Sama_1529at 1860.063 kb on - strand, within Sama_1529at 1860.124 kb on - strand, within Sama_1529at 1860.170 kb on - strand, within Sama_1529at 1860.220 kb on + strand, within Sama_1529at 1860.221 kb on - strand, within Sama_1529at 1860.503 kb on + strandat 1860.526 kb on - strandat 1860.549 kb on + strandat 1860.572 kb on - strandat 1860.572 kb on - strandat 1860.572 kb on - strandat 1860.630 kb on + strand, within Sama_1530at 1860.630 kb on + strand, within Sama_1530at 1860.630 kb on + strand, within Sama_1530at 1860.631 kb on - strand, within Sama_1530at 1860.697 kb on + strand, within Sama_1530at 1860.698 kb on - strand, within Sama_1530at 1860.699 kb on + strand, within Sama_1530at 1860.699 kb on + strand, within Sama_1530at 1860.699 kb on + strand, within Sama_1530at 1860.699 kb on + strand, within Sama_1530at 1860.699 kb on + strand, within Sama_1530at 1860.699 kb on + strand, within Sama_1530at 1860.700 kb on - strand, within Sama_1530at 1860.700 kb on - strand, within Sama_1530at 1860.700 kb on - strand, within Sama_1530at 1860.700 kb on - strand, within Sama_1530at 1860.700 kb on - strand, within Sama_1530at 1860.700 kb on - strand, within Sama_1530at 1860.700 kb on - strand, within Sama_1530at 1860.700 kb on - strand, within Sama_1530at 1860.710 kb on + strand, within Sama_1530at 1860.710 kb on + strand, within Sama_1530at 1860.732 kb on + strand, within Sama_1530at 1860.732 kb on + strand, within Sama_1530at 1860.732 kb on + strand, within Sama_1530at 1860.733 kb on - strand, within Sama_1530at 1860.733 kb on - strand, within Sama_1530at 1860.733 kb on - strand, within Sama_1530at 1860.790 kb on + strand, within Sama_1530at 1860.790 kb on + strand, within Sama_1530at 1860.791 kb on - strand, within Sama_1530at 1860.798 kb on + strand, within Sama_1530at 1860.798 kb on + strand, within Sama_1530at 1860.799 kb on - strand, within Sama_1530at 1860.901 kb on + strand, within Sama_1530at 1860.901 kb on + strand, within Sama_1530at 1860.901 kb on + strand, within Sama_1530at 1860.902 kb on - strand, within Sama_1530at 1860.902 kb on - strand, within Sama_1530at 1861.008 kb on + strand, within Sama_1530at 1861.008 kb on + strand, within Sama_1530at 1861.008 kb on + strand, within Sama_1530at 1861.008 kb on + strand, within Sama_1530at 1861.008 kb on + strand, within Sama_1530at 1861.009 kb on - strand, within Sama_1530at 1861.009 kb on - strand, within Sama_1530at 1861.011 kb on + strand, within Sama_1530at 1861.011 kb on + strand, within Sama_1530at 1861.011 kb on + strand, within Sama_1530at 1861.011 kb on + strand, within Sama_1530at 1861.011 kb on + strand, within Sama_1530at 1861.011 kb on + strand, within Sama_1530at 1861.012 kb on - strand, within Sama_1530at 1861.012 kb on - strand, within Sama_1530at 1861.012 kb on - strand, within Sama_1530at 1861.023 kb on + strand, within Sama_1530at 1861.023 kb on + strand, within Sama_1530at 1861.024 kb on - strand, within Sama_1530at 1861.049 kb on + strand, within Sama_1530at 1861.049 kb on + strand, within Sama_1530at 1861.058 kb on + strand, within Sama_1530at 1861.058 kb on + strand, within Sama_1530at 1861.059 kb on - strand, within Sama_1530at 1861.078 kb on + strand, within Sama_1530at 1861.078 kb on + strand, within Sama_1530at 1861.089 kb on + strand, within Sama_1530at 1861.102 kb on + strand, within Sama_1530at 1861.102 kb on + strand, within Sama_1530at 1861.102 kb on + strand, within Sama_1530at 1861.103 kb on - strand, within Sama_1530at 1861.103 kb on - strand, within Sama_1530at 1861.104 kb on + strand, within Sama_1530at 1861.104 kb on + strand, within Sama_1530at 1861.104 kb on + strand, within Sama_1530at 1861.104 kb on + strand, within Sama_1530at 1861.104 kb on + strand, within Sama_1530at 1861.104 kb on + strand, within Sama_1530at 1861.104 kb on + strand, within Sama_1530at 1861.104 kb on + strand, within Sama_1530at 1861.105 kb on - strand, within Sama_1530at 1861.105 kb on - strand, within Sama_1530at 1861.105 kb on - strand, within Sama_1530at 1861.105 kb on - strand, within Sama_1530at 1861.105 kb on - strand, within Sama_1530at 1861.231 kb on + strand, within Sama_1530at 1861.231 kb on + strand, within Sama_1530at 1861.231 kb on + strand, within Sama_1530at 1861.231 kb on + strand, within Sama_1530at 1861.232 kb on - strand, within Sama_1530at 1861.232 kb on - strand, within Sama_1530at 1861.232 kb on - strand, within Sama_1530at 1861.232 kb on - strand, within Sama_1530at 1861.232 kb on - strand, within Sama_1530at 1861.232 kb on - strand, within Sama_1530at 1861.232 kb on - strand, within Sama_1530at 1861.234 kb on + strand, within Sama_1530at 1861.234 kb on + strand, within Sama_1530at 1861.234 kb on + strand, within Sama_1530at 1861.234 kb on + strand, within Sama_1530at 1861.241 kb on + strand, within Sama_1530at 1861.241 kb on + strand, within Sama_1530at 1861.241 kb on + strand, within Sama_1530at 1861.241 kb on + strand, within Sama_1530at 1861.242 kb on - strand, within Sama_1530

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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1,858,057 + -0.0
1,858,069 - -1.7
1,858,131 - -2.5
1,858,131 - +0.2
1,858,154 - +0.2
1,858,207 - +2.7
1,858,207 - +2.6
1,858,207 - +0.6
1,858,207 - +1.4
1,858,207 - +2.4
1,858,329 - Sama_1528 0.26 +1.0
1,858,331 - Sama_1528 0.26 +0.6
1,858,331 - Sama_1528 0.26 +0.8
1,858,347 - Sama_1528 0.29 +1.1
1,858,404 - Sama_1528 0.37 +1.8
1,858,404 - Sama_1528 0.37 +3.0
1,858,683 - Sama_1528 0.79 +1.1
1,858,695 - Sama_1528 0.80 +1.1
1,858,771 - -0.4
1,858,771 - +3.3
1,858,777 - +0.3
1,858,791 - +3.6
1,858,839 - +0.4
1,858,840 + +1.9
1,858,884 + +0.9
1,858,885 - +3.0
1,858,885 - +1.0
1,858,972 + +0.6
1,858,972 + +0.3
1,858,973 - +1.5
1,858,973 - -0.8
1,858,973 - -1.6
1,859,002 + +1.1
1,859,003 - -0.6
1,859,003 - +0.8
1,859,017 + -2.1
1,859,018 - -0.5
1,859,018 - +0.3
1,859,027 - +2.0
1,859,161 + Sama_1529 0.14 +0.2
1,859,180 + Sama_1529 0.16 +0.0
1,859,180 + Sama_1529 0.16 -1.4
1,859,181 - Sama_1529 0.16 -0.8
1,859,181 - Sama_1529 0.16 +1.3
1,859,181 - Sama_1529 0.16 +0.2
1,859,285 + Sama_1529 0.22 -1.6
1,859,286 - Sama_1529 0.22 +0.9
1,859,286 - Sama_1529 0.22 +0.0
1,859,423 + Sama_1529 0.31 +0.1
1,859,440 + Sama_1529 0.32 +0.0
1,859,441 - Sama_1529 0.32 -1.0
1,859,468 + Sama_1529 0.34 -1.7
1,859,510 + Sama_1529 0.37 +0.3
1,859,511 - Sama_1529 0.37 -1.4
1,859,511 - Sama_1529 0.37 -0.2
1,859,519 + Sama_1529 0.37 +0.8
1,859,532 + Sama_1529 0.38 +0.6
1,859,532 + Sama_1529 0.38 +0.1
1,859,532 + Sama_1529 0.38 -0.7
1,859,533 - Sama_1529 0.38 -0.7
1,859,533 - Sama_1529 0.38 -0.7
1,859,533 - Sama_1529 0.38 +0.2
1,859,533 - Sama_1529 0.38 -1.1
1,859,533 - Sama_1529 0.38 -1.9
1,859,581 + Sama_1529 0.41 -0.5
1,859,700 + Sama_1529 0.49 -0.5
1,859,700 + Sama_1529 0.49 +0.1
1,859,701 - Sama_1529 0.49 -0.3
1,859,701 - Sama_1529 0.49 -0.3
1,859,759 - Sama_1529 0.53 +2.8
1,859,759 - Sama_1529 0.53 +0.4
1,859,944 + Sama_1529 0.65 -1.7
1,860,027 - Sama_1529 0.70 -0.9
1,860,027 - Sama_1529 0.70 -0.7
1,860,027 - Sama_1529 0.70 -0.5
1,860,056 + Sama_1529 0.72 -0.0
1,860,063 - Sama_1529 0.73 +1.2
1,860,124 - Sama_1529 0.76 -2.0
1,860,170 - Sama_1529 0.79 -0.8
1,860,220 + Sama_1529 0.83 -0.7
1,860,221 - Sama_1529 0.83 +2.5
1,860,503 + -0.7
1,860,526 - -0.9
1,860,549 + -0.6
1,860,572 - -0.7
1,860,572 - -1.0
1,860,572 - +0.2
1,860,630 + Sama_1530 0.11 +0.0
1,860,630 + Sama_1530 0.11 +0.5
1,860,630 + Sama_1530 0.11 +0.7
1,860,631 - Sama_1530 0.11 +0.0
1,860,697 + Sama_1530 0.17 +1.8
1,860,698 - Sama_1530 0.17 +0.5
1,860,699 + Sama_1530 0.17 -2.3
1,860,699 + Sama_1530 0.17 -0.3
1,860,699 + Sama_1530 0.17 +0.7
1,860,699 + Sama_1530 0.17 -0.0
1,860,699 + Sama_1530 0.17 +0.0
1,860,699 + Sama_1530 0.17 +1.3
1,860,700 - Sama_1530 0.18 -0.1
1,860,700 - Sama_1530 0.18 +0.1
1,860,700 - Sama_1530 0.18 +0.9
1,860,700 - Sama_1530 0.18 +1.2
1,860,700 - Sama_1530 0.18 +0.0
1,860,700 - Sama_1530 0.18 +1.8
1,860,700 - Sama_1530 0.18 +1.4
1,860,700 - Sama_1530 0.18 -0.8
1,860,710 + Sama_1530 0.19 +0.6
1,860,710 + Sama_1530 0.19 -0.0
1,860,732 + Sama_1530 0.21 +0.5
1,860,732 + Sama_1530 0.21 -0.4
1,860,732 + Sama_1530 0.21 +0.9
1,860,733 - Sama_1530 0.21 +0.2
1,860,733 - Sama_1530 0.21 +0.1
1,860,733 - Sama_1530 0.21 -1.0
1,860,790 + Sama_1530 0.27 +0.8
1,860,790 + Sama_1530 0.27 -0.5
1,860,791 - Sama_1530 0.27 -0.7
1,860,798 + Sama_1530 0.27 +0.2
1,860,798 + Sama_1530 0.27 +0.0
1,860,799 - Sama_1530 0.27 +1.0
1,860,901 + Sama_1530 0.38 +0.5
1,860,901 + Sama_1530 0.38 -0.7
1,860,901 + Sama_1530 0.38 -0.8
1,860,902 - Sama_1530 0.38 -0.3
1,860,902 - Sama_1530 0.38 -0.5
1,861,008 + Sama_1530 0.48 +0.3
1,861,008 + Sama_1530 0.48 +2.2
1,861,008 + Sama_1530 0.48 +0.3
1,861,008 + Sama_1530 0.48 -0.8
1,861,008 + Sama_1530 0.48 -3.5
1,861,009 - Sama_1530 0.48 -0.7
1,861,009 - Sama_1530 0.48 +0.3
1,861,011 + Sama_1530 0.49 -1.1
1,861,011 + Sama_1530 0.49 -0.1
1,861,011 + Sama_1530 0.49 -0.7
1,861,011 + Sama_1530 0.49 +0.9
1,861,011 + Sama_1530 0.49 +0.7
1,861,011 + Sama_1530 0.49 +0.5
1,861,012 - Sama_1530 0.49 -1.7
1,861,012 - Sama_1530 0.49 -0.3
1,861,012 - Sama_1530 0.49 -1.0
1,861,023 + Sama_1530 0.50 +0.1
1,861,023 + Sama_1530 0.50 +0.3
1,861,024 - Sama_1530 0.50 -0.8
1,861,049 + Sama_1530 0.52 -0.3
1,861,049 + Sama_1530 0.52 +0.5
1,861,058 + Sama_1530 0.53 -0.9
1,861,058 + Sama_1530 0.53 -0.5
1,861,059 - Sama_1530 0.53 -0.9
1,861,078 + Sama_1530 0.55 -0.3
1,861,078 + Sama_1530 0.55 +1.4
1,861,089 + Sama_1530 0.56 +2.3
1,861,102 + Sama_1530 0.58 -0.9
1,861,102 + Sama_1530 0.58 -0.5
1,861,102 + Sama_1530 0.58 +0.3
1,861,103 - Sama_1530 0.58 -0.7
1,861,103 - Sama_1530 0.58 -0.4
1,861,104 + Sama_1530 0.58 +1.1
1,861,104 + Sama_1530 0.58 -0.4
1,861,104 + Sama_1530 0.58 -2.5
1,861,104 + Sama_1530 0.58 +1.5
1,861,104 + Sama_1530 0.58 +0.7
1,861,104 + Sama_1530 0.58 -1.0
1,861,104 + Sama_1530 0.58 -1.1
1,861,104 + Sama_1530 0.58 +2.0
1,861,105 - Sama_1530 0.58 +0.9
1,861,105 - Sama_1530 0.58 -1.1
1,861,105 - Sama_1530 0.58 -0.5
1,861,105 - Sama_1530 0.58 +0.5
1,861,105 - Sama_1530 0.58 +0.2
1,861,231 + Sama_1530 0.71 +0.2
1,861,231 + Sama_1530 0.71 +0.7
1,861,231 + Sama_1530 0.71 -0.4
1,861,231 + Sama_1530 0.71 -0.1
1,861,232 - Sama_1530 0.71 -1.4
1,861,232 - Sama_1530 0.71 +0.5
1,861,232 - Sama_1530 0.71 -1.0
1,861,232 - Sama_1530 0.71 +0.6
1,861,232 - Sama_1530 0.71 +1.0
1,861,232 - Sama_1530 0.71 -2.1
1,861,232 - Sama_1530 0.71 +0.9
1,861,234 + Sama_1530 0.71 +1.4
1,861,234 + Sama_1530 0.71 +1.2
1,861,234 + Sama_1530 0.71 +0.1
1,861,234 + Sama_1530 0.71 -0.3
1,861,241 + Sama_1530 0.72 -0.4
1,861,241 + Sama_1530 0.72 +0.2
1,861,241 + Sama_1530 0.72 -0.1
1,861,241 + Sama_1530 0.72 -0.1
1,861,242 - Sama_1530 0.72 +0.3

Or see this region's nucleotide sequence