Strain Fitness in Shewanella amazonensis SB2B around Sama_1505

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
1,825,844	-		Sama_1504	0.19	-0.5
1,825,844	-		Sama_1504	0.19	+1.9
1,825,899	+		Sama_1504	0.24	+0.5
1,825,899	+		Sama_1504	0.24	+1.6
1,825,899	+		Sama_1504	0.24	+0.5
1,825,899	+		Sama_1504	0.24	-1.1
1,825,899	+		Sama_1504	0.24	-0.1
1,825,899	+		Sama_1504	0.24	-1.0
1,825,899	+		Sama_1504	0.24	-3.0
1,825,900	-		Sama_1504	0.25	+0.1
1,825,900	-		Sama_1504	0.25	+1.0
1,825,906	+		Sama_1504	0.25	+0.6
1,825,937	+		Sama_1504	0.28	+0.1
1,825,938	-		Sama_1504	0.28	-0.0
1,825,943	+		Sama_1504	0.29	+1.3
1,825,943	+		Sama_1504	0.29	+0.8
1,825,943	+		Sama_1504	0.29	+1.2
1,825,943	+		Sama_1504	0.29	-0.6
1,825,943	+		Sama_1504	0.29	-0.8
1,825,943	+		Sama_1504	0.29	+0.1
1,825,944	-		Sama_1504	0.29	-1.9
1,825,944	-		Sama_1504	0.29	-0.4
1,825,946	+		Sama_1504	0.29	+0.2
1,825,946	+		Sama_1504	0.29	+1.2
1,825,946	+		Sama_1504	0.29	-0.6
1,825,946	+		Sama_1504	0.29	+0.5
1,826,070	+		Sama_1504	0.41	-0.1
1,826,098	-		Sama_1504	0.44	+2.3
1,826,162	+		Sama_1504	0.50	+0.4
1,826,162	+		Sama_1504	0.50	+1.2
1,826,174	+		Sama_1504	0.52	-1.9
1,826,175	-		Sama_1504	0.52	-0.7
1,826,207	+		Sama_1504	0.55	+1.6
1,826,230	+		Sama_1504	0.57	-0.4
1,826,319	+		Sama_1504	0.66	+0.6
1,826,319	+		Sama_1504	0.66	-0.7
1,826,319	+		Sama_1504	0.66	-0.7
1,826,319	+		Sama_1504	0.66	-0.9
1,826,319	+		Sama_1504	0.66	-0.7
1,826,320	-		Sama_1504	0.66	+0.2
1,826,320	-		Sama_1504	0.66	-0.7
1,826,320	-		Sama_1504	0.66	+0.8
1,826,320	-		Sama_1504	0.66	+0.7
1,826,320	-		Sama_1504	0.66	-1.8
1,826,320	-		Sama_1504	0.66	-1.7
1,826,320	-		Sama_1504	0.66	-0.3
1,826,361	+		Sama_1504	0.70	+0.8
1,826,361	+		Sama_1504	0.70	+2.1
1,826,361	+		Sama_1504	0.70	+0.4
1,826,361	+		Sama_1504	0.70	-0.0
1,826,362	-		Sama_1504	0.70	-1.8
1,826,362	-		Sama_1504	0.70	+0.6
1,826,362	-		Sama_1504	0.70	+0.7
1,826,362	-		Sama_1504	0.70	-0.1
1,826,362	-		Sama_1504	0.70	-1.0
1,826,362	-		Sama_1504	0.70	+0.0
1,826,429	-		Sama_1504	0.77	+0.3
1,826,429	-		Sama_1504	0.77	-0.4
1,826,453	+		Sama_1504	0.79	+0.2
1,826,453	+		Sama_1504	0.79	-1.0
1,826,456	+		Sama_1504	0.80	+0.1
1,826,456	+		Sama_1504	0.80	-0.6
1,826,512	+		Sama_1504	0.85	+0.7
1,826,512	+		Sama_1504	0.85	-1.8
1,826,602	+				+0.6
1,826,602	+				-0.4
1,826,602	+				+1.7
1,826,603	-				+1.5
1,826,603	-				+0.3
1,826,662	+				+1.6
1,826,677	-				-1.6
1,826,712	+				+1.9
1,826,713	-				-1.4
1,826,713	-				-0.2
1,826,713	-				-0.9
1,826,729	+				-2.4
1,826,807	+				-0.0
1,826,807	+				+0.4
1,826,808	-				-0.3
1,826,808	-				+2.2
1,826,808	-				+1.8
1,826,912	-		Sama_1505	0.14	-0.3
1,826,935	+		Sama_1505	0.16	-0.1
1,826,936	-		Sama_1505	0.16	-0.2
1,826,983	+		Sama_1505	0.20	-2.0
1,826,983	+		Sama_1505	0.20	+1.1
1,826,983	+		Sama_1505	0.20	+0.1
1,826,983	+		Sama_1505	0.20	+0.0
1,826,983	+		Sama_1505	0.20	+0.6
1,826,983	+		Sama_1505	0.20	-0.7
1,826,984	-		Sama_1505	0.20	-1.1
1,826,984	-		Sama_1505	0.20	+0.5
1,827,120	+		Sama_1505	0.33	-3.1
1,827,120	+		Sama_1505	0.33	+0.7
1,827,121	-		Sama_1505	0.33	+1.4
1,827,137	-		Sama_1505	0.34	-1.4
1,827,201	+		Sama_1505	0.40	-0.8
1,827,235	+		Sama_1505	0.43	+0.8
1,827,236	-		Sama_1505	0.44	-1.1
1,827,239	+		Sama_1505	0.44	-1.8
1,827,239	+		Sama_1505	0.44	-0.4
1,827,240	-		Sama_1505	0.44	-0.2
1,827,240	-		Sama_1505	0.44	+0.2
1,827,240	-		Sama_1505	0.44	+0.2
1,827,240	-		Sama_1505	0.44	-0.2
1,827,299	+		Sama_1505	0.49	-0.6
1,827,309	+		Sama_1505	0.50	-0.4
1,827,410	-		Sama_1505	0.60	-0.5
1,827,462	+		Sama_1505	0.64	+1.8
1,827,479	+		Sama_1505	0.66	+0.0
1,827,494	-		Sama_1505	0.67	-0.9
1,827,500	+		Sama_1505	0.68	-1.6
1,827,500	+		Sama_1505	0.68	+0.4
1,827,501	-		Sama_1505	0.68	-0.6
1,827,501	-		Sama_1505	0.68	-1.4
1,827,501	-		Sama_1505	0.68	+0.4
1,827,507	+		Sama_1505	0.69	+0.6
1,827,507	+		Sama_1505	0.69	+0.1
1,827,507	+		Sama_1505	0.69	-0.6
1,827,508	-		Sama_1505	0.69	+0.5
1,827,508	-		Sama_1505	0.69	-0.1
1,827,508	-		Sama_1505	0.69	+0.3
1,827,574	+		Sama_1505	0.75	-0.5
1,827,575	-		Sama_1505	0.75	+0.3
1,827,575	-		Sama_1505	0.75	+0.4
1,827,681	+		Sama_1505	0.85	-1.5
1,827,681	+		Sama_1505	0.85	-0.8
1,827,681	+		Sama_1505	0.85	+1.1
1,827,681	+		Sama_1505	0.85	-0.1
1,827,682	-		Sama_1505	0.85	+0.0
1,827,714	+		Sama_1505	0.88	+1.9
1,827,836	-				-1.2
1,827,836	-				+1.4
1,827,845	+				+1.4
1,827,845	+				-1.4
1,827,846	-				+0.7
1,827,877	+				+2.0
1,827,878	-				+2.1
1,827,878	-				+0.0
1,827,887	+				+1.9
1,827,887	+				+0.4
1,827,900	+				+0.4
1,827,900	+				+0.5
1,827,900	+				-2.4
1,827,907	+				-0.5
1,827,907	+				+0.0
1,827,907	+				+0.2
1,827,907	+				+0.1
1,827,908	-				-0.2
1,827,908	-				+0.3
1,827,908	-				-0.4
1,827,908	-				-0.1
1,827,968	+				-1.0
1,827,969	-				-2.0
1,828,019	+				+2.1
1,828,019	+				-0.4
1,828,020	-				+0.4
1,828,024	+				-0.6
1,828,025	-				-0.0
1,828,059	+				-1.9
1,828,059	+				-1.9
1,828,059	+				+0.8
1,828,158	+				+0.8
1,828,159	-				-0.8
1,828,159	-				+0.1
1,828,159	-				-1.8
1,828,169	+				-1.1
1,828,251	+				+0.4
1,828,252	-				+1.0
1,828,259	-				+1.9
1,828,259	-				+1.6
1,828,285	-		Sama_1506	0.11	-1.2
1,828,285	-		Sama_1506	0.11	-1.1
1,828,334	+		Sama_1506	0.13	+0.5
1,828,334	+		Sama_1506	0.13	+0.7
1,828,335	-		Sama_1506	0.13	-1.0
1,828,335	-		Sama_1506	0.13	-0.1
1,828,336	+		Sama_1506	0.13	+1.1
1,828,336	+		Sama_1506	0.13	-0.3
1,828,336	+		Sama_1506	0.13	-0.6
1,828,336	+		Sama_1506	0.13	+1.0
1,828,336	+		Sama_1506	0.13	-0.4
1,828,336	+		Sama_1506	0.13	+1.0
1,828,337	-		Sama_1506	0.13	+1.2
1,828,337	-		Sama_1506	0.13	-1.8
1,828,337	-		Sama_1506	0.13	-0.9
1,828,337	-		Sama_1506	0.13	-0.3
1,828,372	+		Sama_1506	0.14	+0.4
1,828,373	-		Sama_1506	0.14	+3.6
1,828,373	-		Sama_1506	0.14	+0.7
1,828,433	+		Sama_1506	0.17	-1.5
1,828,482	-		Sama_1506	0.19	+0.1
1,828,538	-		Sama_1506	0.22	-2.0
1,828,538	-		Sama_1506	0.22	-0.6
1,828,580	+		Sama_1506	0.24	-0.8
1,828,581	-		Sama_1506	0.24	+0.3
1,828,599	-		Sama_1506	0.24	-1.9
1,828,599	-		Sama_1506	0.24	+0.9
1,828,712	+		Sama_1506	0.29	-0.2
1,828,713	-		Sama_1506	0.29	-0.6
1,828,824	+		Sama_1506	0.34	-0.2
1,828,824	+		Sama_1506	0.34	-0.2
1,828,824	+		Sama_1506	0.34	+1.6
1,828,824	+		Sama_1506	0.34	-1.2