Strain Fitness in Shewanella amazonensis SB2B around Sama_1364

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
1,653,276	-				+1.0
1,653,341	-				+0.3
1,653,341	-				-0.7
1,653,362	-				-2.6
1,653,362	-				-2.8
1,653,362	-				-2.2
1,653,362	-				-0.6
1,653,370	+				+2.8
1,653,370	+				+1.0
1,653,371	-				-0.8
1,653,549	-		Sama_1363	0.34	-2.0
1,653,549	-		Sama_1363	0.34	-2.4
1,653,676	+		Sama_1363	0.65	-0.3
1,653,676	+		Sama_1363	0.65	+0.3
1,653,677	-		Sama_1363	0.66	-2.4
1,653,677	-		Sama_1363	0.66	-0.4
1,653,680	+		Sama_1363	0.66	-0.8
1,653,681	-		Sama_1363	0.67	-1.8
1,653,727	+		Sama_1363	0.78	+1.3
1,653,728	-		Sama_1363	0.78	-1.0
1,653,785	-				-1.9
1,653,785	-				-1.9
1,653,902	+				+0.6
1,653,903	-				-1.1
1,653,935	-				-1.1
1,653,979	-				-0.3
1,653,989	+				-0.9
1,653,997	+				+0.3
1,654,018	+				-0.8
1,654,024	-				-1.9
1,654,065	+				-0.6
1,654,065	+				-0.8
1,654,066	-				-0.4
1,654,080	-				-0.4
1,654,080	-				+0.2
1,654,091	+				-0.3
1,654,119	+				+0.4
1,654,120	-				-1.2
1,654,184	+				-0.2
1,654,184	+				+2.9
1,654,184	+				-1.1
1,654,184	+				-0.3
1,654,185	-				-0.3
1,654,199	-				-0.6
1,654,199	-				-0.7
1,654,199	-				-1.4
1,654,349	-				+2.4
1,654,350	+				-0.2
1,654,350	+				+0.3
1,654,350	+				-0.4
1,654,360	-				+0.3
1,654,380	-				+0.8
1,654,380	-				+0.2
1,654,380	-				-1.4
1,654,386	+		Sama_1364	0.10	-0.8
1,654,386	+		Sama_1364	0.10	+0.8
1,654,386	+		Sama_1364	0.10	+0.3
1,654,386	+		Sama_1364	0.10	+0.3
1,654,387	-		Sama_1364	0.10	+3.0
1,654,387	-		Sama_1364	0.10	-1.6
1,654,387	-		Sama_1364	0.10	-0.2
1,654,387	-		Sama_1364	0.10	+0.4
1,654,387	-		Sama_1364	0.10	+0.2
1,654,387	-		Sama_1364	0.10	-0.6
1,654,389	-		Sama_1364	0.10	+0.9
1,654,476	-		Sama_1364	0.15	-0.3
1,654,482	+		Sama_1364	0.15	-1.0
1,654,482	+		Sama_1364	0.15	-0.4
1,654,483	-		Sama_1364	0.15	-0.4
1,654,483	-		Sama_1364	0.15	-1.2
1,654,483	-		Sama_1364	0.15	-0.9
1,654,483	-		Sama_1364	0.15	-0.7
1,654,566	+		Sama_1364	0.20	+0.2
1,654,566	+		Sama_1364	0.20	+0.1
1,654,566	+		Sama_1364	0.20	-0.1
1,654,566	+		Sama_1364	0.20	-0.9
1,654,567	-		Sama_1364	0.20	-0.5
1,654,567	-		Sama_1364	0.20	-2.4
1,654,567	-		Sama_1364	0.20	+0.9
1,654,593	+		Sama_1364	0.21	+1.1
1,654,676	+		Sama_1364	0.25	-0.1
1,654,747	-		Sama_1364	0.29	-0.1
1,654,810	+		Sama_1364	0.32	+2.3
1,654,810	+		Sama_1364	0.32	-0.2
1,654,824	+		Sama_1364	0.33	+1.1
1,654,824	+		Sama_1364	0.33	+0.1
1,654,825	-		Sama_1364	0.33	-1.3
1,654,926	+		Sama_1364	0.38	-1.1
1,654,926	+		Sama_1364	0.38	-0.4
1,654,926	+		Sama_1364	0.38	-0.9
1,654,926	+		Sama_1364	0.38	+0.1
1,654,926	+		Sama_1364	0.38	+0.1
1,654,926	+		Sama_1364	0.38	+0.5
1,654,926	+		Sama_1364	0.38	-0.6
1,654,926	+		Sama_1364	0.38	-0.2
1,654,926	+		Sama_1364	0.38	-0.1
1,654,926	+		Sama_1364	0.38	-1.7
1,654,927	-		Sama_1364	0.38	-2.2
1,654,935	+		Sama_1364	0.39	-0.8
1,654,935	+		Sama_1364	0.39	-1.2
1,654,935	+		Sama_1364	0.39	+1.0
1,654,935	+		Sama_1364	0.39	-0.2
1,654,935	+		Sama_1364	0.39	-0.1
1,654,936	-		Sama_1364	0.39	+1.0
1,654,936	-		Sama_1364	0.39	-1.0
1,654,936	-		Sama_1364	0.39	-0.6
1,654,936	-		Sama_1364	0.39	+0.4
1,654,937	+		Sama_1364	0.39	+0.5
1,654,937	+		Sama_1364	0.39	+0.2
1,654,937	+		Sama_1364	0.39	-1.9
1,654,937	+		Sama_1364	0.39	+1.0
1,654,938	-		Sama_1364	0.39	+0.7
1,654,938	-		Sama_1364	0.39	+0.6
1,654,938	-		Sama_1364	0.39	+1.2
1,654,938	-		Sama_1364	0.39	+0.0
1,654,938	-		Sama_1364	0.39	+1.4
1,654,938	-		Sama_1364	0.39	-0.1
1,655,081	-		Sama_1364	0.46	+0.4
1,655,091	+		Sama_1364	0.47	+1.9
1,655,091	+		Sama_1364	0.47	-0.5
1,655,091	+		Sama_1364	0.47	+2.0
1,655,091	+		Sama_1364	0.47	-0.3
1,655,091	+		Sama_1364	0.47	-2.6
1,655,091	+		Sama_1364	0.47	-1.2
1,655,091	+		Sama_1364	0.47	+0.1
1,655,091	+		Sama_1364	0.47	+2.0
1,655,091	+		Sama_1364	0.47	+0.6
1,655,092	-		Sama_1364	0.47	-1.6
1,655,092	-		Sama_1364	0.47	+1.7
1,655,092	-		Sama_1364	0.47	+0.7
1,655,092	-		Sama_1364	0.47	+0.6
1,655,092	-		Sama_1364	0.47	-0.6
1,655,100	+		Sama_1364	0.47	-1.0
1,655,101	-		Sama_1364	0.47	-0.7
1,655,101	-		Sama_1364	0.47	+0.0
1,655,137	-		Sama_1364	0.49	+0.5
1,655,196	+		Sama_1364	0.52	-0.2
1,655,197	-		Sama_1364	0.52	-1.8
1,655,204	-		Sama_1364	0.53	-0.7
1,655,204	-		Sama_1364	0.53	-0.6
1,655,297	+		Sama_1364	0.57	-0.3
1,655,297	+		Sama_1364	0.57	-0.6
1,655,297	+		Sama_1364	0.57	-1.0
1,655,297	+		Sama_1364	0.57	-1.9
1,655,297	+		Sama_1364	0.57	-1.7
1,655,607	+		Sama_1364	0.73	-0.9
1,655,607	+		Sama_1364	0.73	+0.5
1,655,608	-		Sama_1364	0.73	-2.1
1,655,608	-		Sama_1364	0.73	-0.4
1,655,619	+		Sama_1364	0.74	+0.2
1,655,619	+		Sama_1364	0.74	+0.1
1,655,619	+		Sama_1364	0.74	+1.6
1,655,619	+		Sama_1364	0.74	+0.8
1,655,620	-		Sama_1364	0.74	-0.7
1,655,620	-		Sama_1364	0.74	-0.3
1,655,620	-		Sama_1364	0.74	+2.3
1,655,631	+		Sama_1364	0.75	-0.2
1,655,631	+		Sama_1364	0.75	+0.9
1,655,643	+		Sama_1364	0.75	+1.6
1,655,643	+		Sama_1364	0.75	+2.0
1,655,644	-		Sama_1364	0.75	-1.4
1,655,664	+		Sama_1364	0.76	-0.7
1,655,664	+		Sama_1364	0.76	-1.2
1,655,664	+		Sama_1364	0.76	-0.3
1,655,664	+		Sama_1364	0.76	+1.3
1,655,665	-		Sama_1364	0.76	+1.9
1,655,665	-		Sama_1364	0.76	-0.5
1,655,683	-		Sama_1364	0.77	-0.7
1,655,688	+		Sama_1364	0.78	-0.8
1,655,688	+		Sama_1364	0.78	-0.5
1,655,688	+		Sama_1364	0.78	-2.1
1,655,688	+		Sama_1364	0.78	-0.6
1,655,689	-		Sama_1364	0.78	+0.0
1,655,689	-		Sama_1364	0.78	+0.3
1,655,717	+		Sama_1364	0.79	-2.9
1,655,722	+		Sama_1364	0.79	+1.1
1,655,722	+		Sama_1364	0.79	-0.4
1,655,722	+		Sama_1364	0.79	-2.7
1,655,722	+		Sama_1364	0.79	-0.6
1,655,863	+		Sama_1364	0.87	+0.7
1,655,984	+				+1.4
1,655,985	-				+0.4
1,656,030	+				-0.8
1,656,030	+				+0.0
1,656,031	-				-0.1
1,656,031	-				+1.6
1,656,031	-				-1.0
1,656,031	-				+0.0
1,656,031	-				-1.4
1,656,037	+				-1.7
1,656,037	+				+0.7
1,656,037	+				+3.5
1,656,037	+				-1.2
1,656,038	-				-1.7
1,656,130	+				-0.3
1,656,130	+				+1.2
1,656,131	-				+2.0
1,656,174	+				-0.6
1,656,174	+				+2.5
1,656,175	-				+1.9
1,656,187	+				+0.7
1,656,188	-				+0.6
1,656,200	-				-0.1
1,656,220	-				-0.6
1,656,220	-				+3.6
1,656,229	+				-0.3
1,656,229	+				+1.5
1,656,230	-				-0.3
1,656,235	-				-1.4
1,656,258	-				-0.2
1,656,324	+				-0.5
1,656,325	-				-0.3
1,656,325	-				-0.6
1,656,395	+				+0.4
1,656,589	-		Sama_1365	0.18	+1.2
1,656,610	+		Sama_1365	0.20	-0.8
1,656,611	-		Sama_1365	0.20	-1.3
1,656,623	-		Sama_1365	0.21	-2.0
1,656,673	+		Sama_1365	0.24	-1.2
1,656,678	+		Sama_1365	0.24	+0.0
1,656,744	+		Sama_1365	0.29	-0.1
1,656,914	+		Sama_1365	0.40	-0.2
1,656,914	+		Sama_1365	0.40	+0.6
1,656,914	+		Sama_1365	0.40	+1.6
1,656,914	+		Sama_1365	0.40	-0.7
1,656,914	+		Sama_1365	0.40	+1.5
1,656,914	+		Sama_1365	0.40	-1.2
1,656,914	+		Sama_1365	0.40	+0.2
1,656,914	+		Sama_1365	0.40	+0.7
1,656,914	+		Sama_1365	0.40	+2.4
1,656,915	-		Sama_1365	0.40	-0.5
1,656,915	-		Sama_1365	0.40	+0.5
1,656,915	-		Sama_1365	0.40	-1.0
1,656,915	-		Sama_1365	0.40	+1.3
1,656,915	-		Sama_1365	0.40	-1.4
1,656,915	-		Sama_1365	0.40	-1.9
1,656,915	-		Sama_1365	0.40	+0.4
1,656,918	+		Sama_1365	0.40	-1.9
1,656,918	+		Sama_1365	0.40	+0.9
1,656,918	+		Sama_1365	0.40	-0.8
1,656,918	+		Sama_1365	0.40	+0.5
1,656,918	+		Sama_1365	0.40	-0.2
1,656,918	+		Sama_1365	0.40	+0.2
1,656,919	-		Sama_1365	0.40	-1.4
1,656,919	-		Sama_1365	0.40	-1.0
1,656,941	+		Sama_1365	0.41	+0.7
1,656,941	+		Sama_1365	0.41	+0.9
1,656,942	-		Sama_1365	0.41	-0.7
1,656,942	-		Sama_1365	0.41	+2.1
1,656,942	-		Sama_1365	0.41	-0.4
1,657,001	+		Sama_1365	0.45	-0.2
1,657,088	+		Sama_1365	0.51	-2.9
1,657,088	+		Sama_1365	0.51	-0.7
1,657,088	+		Sama_1365	0.51	+1.8
1,657,099	+		Sama_1365	0.52	-0.4
1,657,099	+		Sama_1365	0.52	+0.0
1,657,099	+		Sama_1365	0.52	+0.4
1,657,099	+		Sama_1365	0.52	+0.4
1,657,099	+		Sama_1365	0.52	+0.1
1,657,099	+		Sama_1365	0.52	+0.3
1,657,099	+		Sama_1365	0.52	+0.9
1,657,100	-		Sama_1365	0.52	+0.9
1,657,102	-		Sama_1365	0.52	-0.6