Strain Fitness in Shewanella amazonensis SB2B around Sama_1362

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
1,651,164	+		Sama_1361	0.46	+2.0
1,651,165	-		Sama_1361	0.46	+1.1
1,651,171	+		Sama_1361	0.46	+1.4
1,651,171	+		Sama_1361	0.46	+1.8
1,651,172	-		Sama_1361	0.46	+0.5
1,651,189	+		Sama_1361	0.47	+0.5
1,651,190	-		Sama_1361	0.47	+0.6
1,651,190	-		Sama_1361	0.47	+1.4
1,651,242	-		Sama_1361	0.50	+0.7
1,651,252	-		Sama_1361	0.51	+0.5
1,651,329	+		Sama_1361	0.56	+2.0
1,651,329	+		Sama_1361	0.56	+1.9
1,651,330	-		Sama_1361	0.56	+3.0
1,651,330	-		Sama_1361	0.56	+1.3
1,651,330	-		Sama_1361	0.56	+2.9
1,651,330	-		Sama_1361	0.56	+1.8
1,651,430	+		Sama_1361	0.62	+1.5
1,651,430	+		Sama_1361	0.62	+2.0
1,651,431	-		Sama_1361	0.62	+3.0
1,651,459	+		Sama_1361	0.64	+0.7
1,651,459	+		Sama_1361	0.64	+0.6
1,651,459	+		Sama_1361	0.64	+1.7
1,651,459	+		Sama_1361	0.64	+1.4
1,651,459	+		Sama_1361	0.64	+0.4
1,651,460	-		Sama_1361	0.64	+1.6
1,651,489	-		Sama_1361	0.66	+1.4
1,651,523	+		Sama_1361	0.68	+1.8
1,651,523	+		Sama_1361	0.68	+3.5
1,651,523	+		Sama_1361	0.68	+1.5
1,651,523	+		Sama_1361	0.68	+3.1
1,651,523	+		Sama_1361	0.68	+0.9
1,651,523	+		Sama_1361	0.68	+1.4
1,651,523	+		Sama_1361	0.68	+0.8
1,651,523	+		Sama_1361	0.68	+2.1
1,651,524	-		Sama_1361	0.68	+1.3
1,651,524	-		Sama_1361	0.68	+1.8
1,651,524	-		Sama_1361	0.68	+1.1
1,651,524	-		Sama_1361	0.68	+2.1
1,651,524	-		Sama_1361	0.68	+3.1
1,651,524	-		Sama_1361	0.68	+1.0
1,651,524	-		Sama_1361	0.68	+1.3
1,651,524	-		Sama_1361	0.68	-0.6
1,651,524	-		Sama_1361	0.68	+1.3
1,651,611	+		Sama_1361	0.73	+0.9
1,651,611	+		Sama_1361	0.73	+2.4
1,651,612	-		Sama_1361	0.73	+0.8
1,651,618	+		Sama_1361	0.74	+0.1
1,651,618	+		Sama_1361	0.74	+1.9
1,651,618	+		Sama_1361	0.74	+1.8
1,651,619	-		Sama_1361	0.74	+1.6
1,651,619	-		Sama_1361	0.74	+1.8
1,651,619	-		Sama_1361	0.74	-0.4
1,651,619	-		Sama_1361	0.74	+0.8
1,651,619	-		Sama_1361	0.74	+0.5
1,651,619	-		Sama_1361	0.74	+1.8
1,651,687	+		Sama_1361	0.78	+1.4
1,651,687	+		Sama_1361	0.78	+1.6
1,651,690	+		Sama_1361	0.78	+1.7
1,651,690	+		Sama_1361	0.78	+1.2
1,651,690	+		Sama_1361	0.78	-0.1
1,651,690	+		Sama_1361	0.78	+1.0
1,651,690	+		Sama_1361	0.78	+2.4
1,651,690	+		Sama_1361	0.78	+1.4
1,651,690	+		Sama_1361	0.78	+2.5
1,651,690	+		Sama_1361	0.78	+2.6
1,651,690	+		Sama_1361	0.78	+0.0
1,651,691	-		Sama_1361	0.78	+2.0
1,651,691	-		Sama_1361	0.78	+1.6
1,651,691	-		Sama_1361	0.78	+0.9
1,651,691	-		Sama_1361	0.78	+1.4
1,651,691	-		Sama_1361	0.78	+0.2
1,651,691	-		Sama_1361	0.78	-0.6
1,651,694	+		Sama_1361	0.78	+1.6
1,651,694	+		Sama_1361	0.78	+0.5
1,651,704	+		Sama_1361	0.79	+1.8
1,651,704	+		Sama_1361	0.79	+3.2
1,651,705	-		Sama_1361	0.79	+0.7
1,651,725	-		Sama_1361	0.80	+0.0
1,651,782	+		Sama_1361	0.84	+1.2
1,651,796	-		Sama_1361	0.85	+1.9
1,651,848	+		Sama_1361	0.88	+1.2
1,651,849	-		Sama_1361	0.88	+0.1
1,651,893	+				+0.1
1,651,946	+				+1.3
1,651,947	-				+1.0
1,651,947	-				+1.7
1,651,947	-				+0.4
1,652,027	+				+2.0
1,652,027	+				+3.0
1,652,028	-				+1.0
1,652,066	+				+0.0
1,652,066	+				+2.6
1,652,126	-				-0.5
1,652,133	-				-2.7
1,652,146	-				-0.6
1,652,158	+				+2.4
1,652,158	+				+1.4
1,652,158	+				+2.1
1,652,159	-				+1.3
1,652,162	+				+0.7
1,652,163	-				+0.2
1,652,171	+				+1.2
1,652,267	-				+2.7
1,652,267	-				-0.6
1,652,278	+		Sama_1362	0.10	+0.7
1,652,279	-		Sama_1362	0.10	-0.4
1,652,279	-		Sama_1362	0.10	+0.2
1,652,341	+		Sama_1362	0.16	+1.9
1,652,343	+		Sama_1362	0.16	+2.3
1,652,343	+		Sama_1362	0.16	+0.1
1,652,344	-		Sama_1362	0.16	+0.2
1,652,344	-		Sama_1362	0.16	+0.1
1,652,344	-		Sama_1362	0.16	+1.1
1,652,407	+		Sama_1362	0.21	-0.1
1,652,407	+		Sama_1362	0.21	+1.6
1,652,407	+		Sama_1362	0.21	+2.4
1,652,414	-		Sama_1362	0.22	+0.6
1,652,414	-		Sama_1362	0.22	+0.7
1,652,414	-		Sama_1362	0.22	-0.7
1,652,440	+		Sama_1362	0.24	+0.5
1,652,440	+		Sama_1362	0.24	+1.9
1,652,440	+		Sama_1362	0.24	+0.5
1,652,440	+		Sama_1362	0.24	+2.1
1,652,440	+		Sama_1362	0.24	+1.2
1,652,441	-		Sama_1362	0.24	-2.6
1,652,441	-		Sama_1362	0.24	+0.8
1,652,441	-		Sama_1362	0.24	+0.5
1,652,441	-		Sama_1362	0.24	-0.3
1,652,441	-		Sama_1362	0.24	-1.1
1,652,441	-		Sama_1362	0.24	+0.8
1,652,441	-		Sama_1362	0.24	+0.7
1,652,484	-		Sama_1362	0.28	+0.9
1,652,484	-		Sama_1362	0.28	+0.7
1,652,515	+		Sama_1362	0.31	+1.7
1,652,516	-		Sama_1362	0.31	+1.8
1,652,516	-		Sama_1362	0.31	+0.4
1,652,516	-		Sama_1362	0.31	-0.0
1,652,516	-		Sama_1362	0.31	-0.8
1,652,516	-		Sama_1362	0.31	-0.4
1,652,516	-		Sama_1362	0.31	+1.8
1,652,526	+		Sama_1362	0.32	+1.0
1,652,526	+		Sama_1362	0.32	+1.8
1,652,526	+		Sama_1362	0.32	+1.5
1,652,527	-		Sama_1362	0.32	+0.4
1,652,527	-		Sama_1362	0.32	-0.4
1,652,528	+		Sama_1362	0.32	+2.0
1,652,529	-		Sama_1362	0.32	+0.6
1,652,529	-		Sama_1362	0.32	+1.2
1,652,534	+		Sama_1362	0.32	+1.4
1,652,534	+		Sama_1362	0.32	-0.4
1,652,534	+		Sama_1362	0.32	+2.6
1,652,631	+		Sama_1362	0.41	-2.3
1,652,632	-		Sama_1362	0.41	+0.0
1,652,649	+		Sama_1362	0.42	+2.2
1,652,650	-		Sama_1362	0.42	+0.7
1,652,655	-		Sama_1362	0.43	+0.7
1,652,697	-		Sama_1362	0.46	+0.4
1,652,753	+		Sama_1362	0.51	+1.8
1,652,800	+		Sama_1362	0.55	+1.4
1,652,801	-		Sama_1362	0.55	+0.9
1,652,809	+		Sama_1362	0.56	+1.6
1,652,809	+		Sama_1362	0.56	+1.0
1,652,809	+		Sama_1362	0.56	-2.8
1,652,809	+		Sama_1362	0.56	+1.8
1,652,809	+		Sama_1362	0.56	+1.6
1,652,809	+		Sama_1362	0.56	-0.3
1,652,809	+		Sama_1362	0.56	+1.4
1,652,809	+		Sama_1362	0.56	+1.4
1,652,810	-		Sama_1362	0.56	+2.3
1,652,810	-		Sama_1362	0.56	-0.8
1,652,810	-		Sama_1362	0.56	+1.1
1,652,810	-		Sama_1362	0.56	+0.4
1,652,810	-		Sama_1362	0.56	+0.8
1,652,810	-		Sama_1362	0.56	+1.9
1,652,810	-		Sama_1362	0.56	-0.4
1,652,810	-		Sama_1362	0.56	+0.3
1,652,810	-		Sama_1362	0.56	-1.4
1,652,861	+		Sama_1362	0.60	+1.1
1,652,863	+		Sama_1362	0.60	+2.4
1,652,863	+		Sama_1362	0.60	+1.4
1,652,863	+		Sama_1362	0.60	+2.3
1,652,864	-		Sama_1362	0.60	+0.6
1,652,864	-		Sama_1362	0.60	-0.5
1,652,864	-		Sama_1362	0.60	+1.1
1,652,902	-		Sama_1362	0.64	+1.3
1,652,977	+		Sama_1362	0.70	+1.5
1,652,977	+		Sama_1362	0.70	+3.3
1,652,977	+		Sama_1362	0.70	+1.7
1,652,978	-		Sama_1362	0.70	+1.1
1,652,978	-		Sama_1362	0.70	+2.0
1,653,047	-		Sama_1362	0.76	+1.2
1,653,110	-		Sama_1362	0.81	+1.7
1,653,131	-		Sama_1362	0.83	-1.0
1,653,276	-				+1.0
1,653,341	-				+0.3
1,653,341	-				-0.7
1,653,362	-				-2.6
1,653,362	-				-2.8
1,653,362	-				-2.2
1,653,362	-				-0.6
1,653,370	+				+2.8
1,653,370	+				+1.0
1,653,371	-				-0.8
1,653,549	-		Sama_1363	0.34	-2.0
1,653,549	-		Sama_1363	0.34	-2.4
1,653,676	+		Sama_1363	0.65	-0.3
1,653,676	+		Sama_1363	0.65	+0.3
1,653,677	-		Sama_1363	0.66	-2.4
1,653,677	-		Sama_1363	0.66	-0.4
1,653,680	+		Sama_1363	0.66	-0.8
1,653,681	-		Sama_1363	0.67	-1.8
1,653,727	+		Sama_1363	0.78	+1.3
1,653,728	-		Sama_1363	0.78	-1.0
1,653,785	-				-1.9
1,653,785	-				-1.9
1,653,902	+				+0.6
1,653,903	-				-1.1
1,653,935	-				-1.1
1,653,979	-				-0.3
1,653,989	+				-0.9
1,653,997	+				+0.3
1,654,018	+				-0.8
1,654,024	-				-1.9
1,654,065	+				-0.6
1,654,065	+				-0.8
1,654,066	-				-0.4
1,654,080	-				-0.4
1,654,080	-				+0.2
1,654,091	+				-0.3
1,654,119	+				+0.4
1,654,120	-				-1.2
1,654,184	+				-0.2
1,654,184	+				+2.9
1,654,184	+				-1.1
1,654,184	+				-0.3
1,654,185	-				-0.3
1,654,199	-				-0.6
1,654,199	-				-0.7
1,654,199	-				-1.4