Strain Fitness in Shewanella amazonensis SB2B around Sama_1167

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
1,421,392	+		Sama_1166	0.21	-1.1
1,421,392	+		Sama_1166	0.21	-0.7
1,421,461	+		Sama_1166	0.27	-0.9
1,421,461	+		Sama_1166	0.27	-1.7
1,421,462	-		Sama_1166	0.27	-0.6
1,421,462	-		Sama_1166	0.27	-1.3
1,421,479	+		Sama_1166	0.28	-1.2
1,421,493	+		Sama_1166	0.29	-0.2
1,421,521	-		Sama_1166	0.31	-0.9
1,421,521	-		Sama_1166	0.31	+0.8
1,421,522	+		Sama_1166	0.31	-1.2
1,421,522	+		Sama_1166	0.31	+1.9
1,421,548	+		Sama_1166	0.33	-1.4
1,421,549	-		Sama_1166	0.34	+0.1
1,421,549	-		Sama_1166	0.34	-1.3
1,421,549	-		Sama_1166	0.34	+0.5
1,421,549	-		Sama_1166	0.34	-0.5
1,421,549	-		Sama_1166	0.34	+0.2
1,421,575	-		Sama_1166	0.36	-1.1
1,421,604	+		Sama_1166	0.38	-1.1
1,421,625	-		Sama_1166	0.40	-0.9
1,421,625	-		Sama_1166	0.40	+0.3
1,421,648	-		Sama_1166	0.41	-0.4
1,421,717	-		Sama_1166	0.47	+0.6
1,421,764	+		Sama_1166	0.51	-0.5
1,421,765	-		Sama_1166	0.51	-0.5
1,421,862	+		Sama_1166	0.58	+0.8
1,422,025	+		Sama_1166	0.71	-1.3
1,422,025	+		Sama_1166	0.71	+0.3
1,422,107	+		Sama_1166	0.78	+0.2
1,422,112	+		Sama_1166	0.78	+0.2
1,422,112	+		Sama_1166	0.78	-0.3
1,422,112	+		Sama_1166	0.78	+1.5
1,422,113	-		Sama_1166	0.78	-0.3
1,422,113	-		Sama_1166	0.78	+0.1
1,422,170	+		Sama_1166	0.83	+0.8
1,422,171	-		Sama_1166	0.83	-0.2
1,422,271	+				-1.2
1,422,271	+				+0.3
1,422,272	-				+0.2
1,422,272	-				+0.2
1,422,272	-				-0.2
1,422,272	-				-1.3
1,422,272	-				+0.8
1,422,289	+				-0.3
1,422,297	-				-0.3
1,422,297	-				-1.8
1,422,328	+				+0.4
1,422,328	+				-0.4
1,422,369	-				+0.5
1,422,386	+				+0.6
1,422,386	+				-2.6
1,422,386	+				-1.2
1,422,387	-				+0.8
1,422,387	-				-0.7
1,422,449	+				-1.6
1,422,449	+				+0.5
1,422,449	+				-0.0
1,422,449	+				+1.3
1,422,449	+				-1.4
1,422,450	-				+3.8
1,422,450	-				-0.1
1,422,450	-				-0.0
1,422,450	-				-0.4
1,422,450	-				-0.1
1,422,450	-				-1.0
1,422,450	-				-0.2
1,422,450	-				+0.2
1,422,469	+				-0.4
1,422,469	+				-0.9
1,422,600	-				-0.7
1,422,641	+				+0.5
1,422,642	-				+0.4
1,422,688	-				+0.6
1,422,777	+		Sama_1167	0.13	+1.0
1,422,777	+		Sama_1167	0.13	+0.9
1,422,777	+		Sama_1167	0.13	-0.7
1,422,778	-		Sama_1167	0.13	+0.1
1,422,778	-		Sama_1167	0.13	+1.7
1,422,778	-		Sama_1167	0.13	+0.3
1,422,778	-		Sama_1167	0.13	-1.8
1,422,785	+		Sama_1167	0.13	+0.5
1,422,785	+		Sama_1167	0.13	-2.1
1,422,786	-		Sama_1167	0.13	-0.7
1,422,786	-		Sama_1167	0.13	+0.8
1,422,786	-		Sama_1167	0.13	+0.5
1,422,786	-		Sama_1167	0.13	-2.3
1,422,895	+		Sama_1167	0.17	-1.9
1,422,895	+		Sama_1167	0.17	-1.3
1,422,896	-		Sama_1167	0.17	-0.4
1,422,896	-		Sama_1167	0.17	-1.8
1,422,905	+		Sama_1167	0.17	+0.8
1,422,906	-		Sama_1167	0.17	-0.8
1,422,918	+		Sama_1167	0.17	-0.5
1,422,918	+		Sama_1167	0.17	+2.4
1,422,918	+		Sama_1167	0.17	+2.2
1,422,919	-		Sama_1167	0.17	-2.2
1,422,919	-		Sama_1167	0.17	+1.2
1,422,919	-		Sama_1167	0.17	-0.6
1,422,920	+		Sama_1167	0.18	-1.9
1,422,921	-		Sama_1167	0.18	-3.1
1,422,986	+		Sama_1167	0.20	-0.3
1,422,986	+		Sama_1167	0.20	+0.3
1,422,987	-		Sama_1167	0.20	+0.9
1,422,987	-		Sama_1167	0.20	+0.5
1,423,029	-		Sama_1167	0.21	-1.5
1,423,029	-		Sama_1167	0.21	+0.5
1,423,073	+		Sama_1167	0.23	+0.0
1,423,073	+		Sama_1167	0.23	-0.9
1,423,073	+		Sama_1167	0.23	-0.2
1,423,073	+		Sama_1167	0.23	+0.7
1,423,073	+		Sama_1167	0.23	+0.3
1,423,073	+		Sama_1167	0.23	+0.2
1,423,073	+		Sama_1167	0.23	-1.1
1,423,073	+		Sama_1167	0.23	+0.8
1,423,074	-		Sama_1167	0.23	+4.6
1,423,074	-		Sama_1167	0.23	+0.2
1,423,074	-		Sama_1167	0.23	-1.4
1,423,074	-		Sama_1167	0.23	+1.8
1,423,074	-		Sama_1167	0.23	-0.4
1,423,074	-		Sama_1167	0.23	-0.0
1,423,083	+		Sama_1167	0.23	-1.2
1,423,084	-		Sama_1167	0.23	-0.6
1,423,208	+		Sama_1167	0.27	-1.5
1,423,277	-		Sama_1167	0.29	+0.3
1,423,277	-		Sama_1167	0.29	+1.8
1,423,277	-		Sama_1167	0.29	-1.6
1,423,277	-		Sama_1167	0.29	+1.0
1,423,392	+		Sama_1167	0.33	-1.6
1,423,393	-		Sama_1167	0.33	-0.1
1,423,393	-		Sama_1167	0.33	-1.2
1,423,396	+		Sama_1167	0.33	-0.6
1,423,396	+		Sama_1167	0.33	-0.1
1,423,397	-		Sama_1167	0.33	-0.4
1,423,397	-		Sama_1167	0.33	+0.2
1,423,501	+		Sama_1167	0.37	+0.8
1,423,501	+		Sama_1167	0.37	-0.6
1,423,502	-		Sama_1167	0.37	-1.4
1,423,502	-		Sama_1167	0.37	-1.1
1,423,502	-		Sama_1167	0.37	+1.1
1,423,502	-		Sama_1167	0.37	-0.5
1,423,569	+		Sama_1167	0.39	+0.2
1,423,569	+		Sama_1167	0.39	+0.9
1,423,569	+		Sama_1167	0.39	-0.2
1,423,569	+		Sama_1167	0.39	+0.5
1,423,570	-		Sama_1167	0.39	-2.3
1,423,570	-		Sama_1167	0.39	-0.4
1,423,570	-		Sama_1167	0.39	-1.0
1,423,570	-		Sama_1167	0.39	-0.0
1,423,570	-		Sama_1167	0.39	-1.2
1,423,570	-		Sama_1167	0.39	+3.0
1,423,570	-		Sama_1167	0.39	-0.9
1,423,570	-		Sama_1167	0.39	+0.2
1,423,570	-		Sama_1167	0.39	+0.5
1,423,570	-		Sama_1167	0.39	+1.3
1,423,600	+		Sama_1167	0.40	-1.1
1,423,600	+		Sama_1167	0.40	+1.9
1,423,600	+		Sama_1167	0.40	+0.6
1,423,601	-		Sama_1167	0.40	+0.9
1,423,601	-		Sama_1167	0.40	-0.4
1,423,601	-		Sama_1167	0.40	-0.1
1,423,601	-		Sama_1167	0.40	+0.8
1,423,674	+		Sama_1167	0.42	+0.2
1,423,708	+		Sama_1167	0.43	+0.9
1,423,708	+		Sama_1167	0.43	+1.1
1,423,709	-		Sama_1167	0.43	+1.5
1,423,709	-		Sama_1167	0.43	-1.1
1,423,709	-		Sama_1167	0.43	-0.1
1,423,820	+		Sama_1167	0.47	+1.5
1,423,820	+		Sama_1167	0.47	+0.6
1,423,820	+		Sama_1167	0.47	+1.0
1,423,820	+		Sama_1167	0.47	+0.5
1,423,821	-		Sama_1167	0.47	-0.4
1,423,821	-		Sama_1167	0.47	+1.2
1,423,821	-		Sama_1167	0.47	+0.3
1,423,821	-		Sama_1167	0.47	+0.2
1,423,875	+		Sama_1167	0.49	-1.2
1,423,876	-		Sama_1167	0.49	-0.9
1,423,879	+		Sama_1167	0.49	-1.3
1,423,879	+		Sama_1167	0.49	+0.5
1,423,880	-		Sama_1167	0.49	-0.7
1,423,880	-		Sama_1167	0.49	-0.0
1,423,935	+		Sama_1167	0.51	+1.4
1,423,936	-		Sama_1167	0.51	-0.7
1,423,956	+		Sama_1167	0.51	+0.6
1,423,956	+		Sama_1167	0.51	-1.4
1,423,957	-		Sama_1167	0.51	+4.1
1,423,957	-		Sama_1167	0.51	-1.3
1,424,010	+		Sama_1167	0.53	+2.2
1,424,010	+		Sama_1167	0.53	+0.5
1,424,010	+		Sama_1167	0.53	-1.2
1,424,010	+		Sama_1167	0.53	-0.4
1,424,010	+		Sama_1167	0.53	+0.4
1,424,011	-		Sama_1167	0.53	-0.1
1,424,069	+		Sama_1167	0.55	+1.5
1,424,069	+		Sama_1167	0.55	+1.1
1,424,069	+		Sama_1167	0.55	+1.5
1,424,069	+		Sama_1167	0.55	-0.2
1,424,069	+		Sama_1167	0.55	-0.7
1,424,069	+		Sama_1167	0.55	+0.9
1,424,069	+		Sama_1167	0.55	-0.3
1,424,069	+		Sama_1167	0.55	-0.6
1,424,069	+		Sama_1167	0.55	+0.9
1,424,070	-		Sama_1167	0.55	-0.1
1,424,070	-		Sama_1167	0.55	-0.3
1,424,070	-		Sama_1167	0.55	+0.9
1,424,070	-		Sama_1167	0.55	+0.1
1,424,074	+		Sama_1167	0.55	-0.2
1,424,075	-		Sama_1167	0.55	-1.0
1,424,075	-		Sama_1167	0.55	+0.3
1,424,075	-		Sama_1167	0.55	-0.3
1,424,114	+		Sama_1167	0.57	-1.5
1,424,114	+		Sama_1167	0.57	-1.5
1,424,114	+		Sama_1167	0.57	+1.2
1,424,115	-		Sama_1167	0.57	+0.5
1,424,149	-		Sama_1167	0.58	+1.0
1,424,216	+		Sama_1167	0.60	+0.7
1,424,216	+		Sama_1167	0.60	+0.9
1,424,217	-		Sama_1167	0.60	+0.0
1,424,270	-		Sama_1167	0.62	+0.2
1,424,280	+		Sama_1167	0.62	+1.0
1,424,338	+		Sama_1167	0.64	-1.3
1,424,338	+		Sama_1167	0.64	+0.5
1,424,338	+		Sama_1167	0.64	+1.0
1,424,339	-		Sama_1167	0.64	-1.0
1,424,380	+		Sama_1167	0.65	+0.9
1,424,380	+		Sama_1167	0.65	+2.0
1,424,380	+		Sama_1167	0.65	-0.2
1,424,380	+		Sama_1167	0.65	-0.1
1,424,380	+		Sama_1167	0.65	+0.6
1,424,381	-		Sama_1167	0.65	-2.5
1,424,381	-		Sama_1167	0.65	+4.5
1,424,381	-		Sama_1167	0.65	+2.3
1,424,381	-		Sama_1167	0.65	+1.8
1,424,383	-		Sama_1167	0.65	+0.7
1,424,383	-		Sama_1167	0.65	-2.1
1,424,407	+		Sama_1167	0.66	+0.3
1,424,483	+		Sama_1167	0.69	+2.8
1,424,484	-		Sama_1167	0.69	+0.8
1,424,484	-		Sama_1167	0.69	+0.3
1,424,491	-		Sama_1167	0.69	-0.4
1,424,611	+		Sama_1167	0.73	-2.8
1,424,611	+		Sama_1167	0.73	-1.3
1,424,694	+		Sama_1167	0.76	-0.7
1,424,695	-		Sama_1167	0.76	+1.7
1,424,760	+		Sama_1167	0.78	+1.7
1,424,777	+		Sama_1167	0.78	-0.5
1,424,777	+		Sama_1167	0.78	+0.6
1,424,778	-		Sama_1167	0.78	-1.3
1,424,841	-		Sama_1167	0.80	-1.1
1,424,876	+		Sama_1167	0.81	-0.2
1,424,877	-		Sama_1167	0.82	-0.2
1,424,877	-		Sama_1167	0.82	+3.6
1,424,877	-		Sama_1167	0.82	-2.5
1,424,877	-		Sama_1167	0.82	-0.0
1,424,897	+		Sama_1167	0.82	+0.4
1,424,932	+		Sama_1167	0.83	-1.3
1,424,932	+		Sama_1167	0.83	-0.8
1,424,989	-		Sama_1167	0.85	+0.7
1,424,997	+		Sama_1167	0.85	-1.0
1,424,998	-		Sama_1167	0.85	-1.1
1,425,010	+		Sama_1167	0.86	+0.2
1,425,038	+		Sama_1167	0.87	+0.2
1,425,100	+		Sama_1167	0.89	+1.3
1,425,137	+				-0.7
1,425,148	-				+2.5
1,425,155	+				+2.2
1,425,155	+				+0.3
1,425,185	+				+1.0
1,425,186	-				-1.3
1,425,186	-				-0.5
1,425,186	-				-2.4
1,425,189	+				+1.0
1,425,190	-				-0.3
1,425,190	-				+1.0
1,425,212	-				-0.9
1,425,257	-				+0.8
1,425,258	+				+0.6
1,425,258	+				-0.0
1,425,316	+				-0.5
1,425,316	+				-0.6
1,425,348	+				+0.5
1,425,348	+				+0.7
1,425,365	-				+1.7
1,425,436	+				+0.7
1,425,437	-				+0.8
1,425,437	-				-1.2
1,425,459	+				+0.5
1,425,460	-				-0.4
1,425,523	-				-0.8
1,425,544	+				-0.3
1,425,588	+				-1.8
1,425,589	-				+0.7
1,425,589	-				-0.9
1,425,698	-		Sama_1168	0.28	-0.9
1,425,700	-		Sama_1168	0.29	-1.1
1,425,700	-		Sama_1168	0.29	-2.9
1,426,077	-				-2.0
1,426,080	-				-1.8
1,426,138	-				-3.1
1,426,162	+				-0.1
1,426,202	-				+0.4
1,426,202	-				+0.7
1,426,202	-				+0.8
1,426,210	+				+0.7
1,426,211	-				-3.4
1,426,211	-				-1.5
1,426,257	-				+0.5
1,426,305	+				-0.1
1,426,305	+				-0.6
1,426,305	+				+2.8
1,426,306	-				-1.7
1,426,306	-				-0.5
1,426,306	-				+0.7
1,426,316	+				+0.3
1,426,316	+				+0.7
1,426,317	-				-2.0
1,426,317	-				-1.1
1,426,344	-				+1.8
1,426,364	+				-0.8
1,426,365	-				-3.3
1,426,370	+				-2.0
1,426,370	+				-0.5
1,426,371	-				+1.0
1,426,403	+				-2.4
1,426,404	-				+0.0
1,426,404	-				-0.1
1,426,420	+				+0.8
1,426,420	+				-0.6
1,426,420	+				+1.5
1,426,420	+				+0.3