Strain Fitness in Shewanella amazonensis SB2B around Sama_1122

Experiment: L-Threonine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Threonine (N)
1,372,367	+	queF	Sama_1120	0.75	-0.2
1,372,481	+	queF	Sama_1120	0.88	-0.9
1,372,482	-	queF	Sama_1120	0.88	+0.2
1,372,530	+				+1.1
1,372,530	+				-1.7
1,372,532	+				+0.0
1,372,532	+				-0.3
1,372,533	-				-0.4
1,372,533	-				+0.5
1,372,533	-				-1.3
1,372,533	-				-0.3
1,372,533	-				-1.5
1,372,533	-				-0.2
1,372,588	+				-0.2
1,372,588	+				-0.8
1,372,588	+				-0.7
1,372,588	+				-1.2
1,372,588	+				+0.1
1,372,588	+				-0.8
1,372,588	+				-0.7
1,372,588	+				+0.1
1,372,588	+				-0.8
1,372,588	+				+0.3
1,372,588	+				-2.5
1,372,589	-				+0.9
1,372,589	-				+1.2
1,372,589	-				+1.2
1,372,590	+				-1.2
1,372,591	-				-1.0
1,372,591	-				+1.4
1,372,595	+				-0.3
1,372,595	+				+0.6
1,372,595	+				-1.9
1,372,596	-				-0.3
1,372,611	+				+3.1
1,372,611	+				-0.8
1,372,611	+				+0.0
1,372,611	+				+0.1
1,372,612	-				+1.1
1,372,654	-				-0.3
1,372,655	+				-0.5
1,372,799	-		Sama_1121	0.29	-1.0
1,372,810	+		Sama_1121	0.30	-0.7
1,372,810	+		Sama_1121	0.30	-1.0
1,372,834	+		Sama_1121	0.34	-0.1
1,372,834	+		Sama_1121	0.34	-0.7
1,372,834	+		Sama_1121	0.34	+0.5
1,372,835	-		Sama_1121	0.34	-1.1
1,372,844	+		Sama_1121	0.35	-0.6
1,372,867	+		Sama_1121	0.39	+0.1
1,372,867	+		Sama_1121	0.39	-0.1
1,372,867	+		Sama_1121	0.39	+1.2
1,372,867	+		Sama_1121	0.39	+0.2
1,372,867	+		Sama_1121	0.39	-0.5
1,372,868	-		Sama_1121	0.39	+1.7
1,372,868	-		Sama_1121	0.39	-0.4
1,373,173	-		Sama_1121	0.86	+0.2
1,373,173	-		Sama_1121	0.86	-2.7
1,373,198	-				+1.4
1,373,227	+				+1.5
1,373,293	+				-0.7
1,373,293	+				-2.2
1,373,307	-				-0.6
1,373,307	-				+1.1
1,373,343	+				-0.6
1,373,343	+				-0.5
1,373,344	-				-1.2
1,373,350	+				+0.5
1,373,350	+				-0.4
1,373,350	+				-0.4
1,373,350	+				+0.4
1,373,350	+				-0.9
1,373,350	+				-0.4
1,373,350	+				-0.1
1,373,350	+				+0.6
1,373,350	+				-2.5
1,373,351	-				+0.4
1,373,351	-				-0.4
1,373,351	-				+1.2
1,373,351	-				+1.4
1,373,351	-				-0.1
1,373,364	-				+0.3
1,373,520	-		Sama_1122	0.20	-2.4
1,373,525	+		Sama_1122	0.21	+0.3
1,373,525	+		Sama_1122	0.21	-1.2
1,373,525	+		Sama_1122	0.21	+0.8
1,373,525	+		Sama_1122	0.21	-0.3
1,373,525	+		Sama_1122	0.21	+0.4
1,373,525	+		Sama_1122	0.21	-0.1
1,373,526	-		Sama_1122	0.21	-1.8
1,373,526	-		Sama_1122	0.21	-0.4
1,373,526	-		Sama_1122	0.21	-0.0
1,373,528	+		Sama_1122	0.21	-0.5
1,373,529	-		Sama_1122	0.22	-1.7
1,373,531	+		Sama_1122	0.22	+0.5
1,373,531	+		Sama_1122	0.22	-1.5
1,373,531	+		Sama_1122	0.22	-0.2
1,373,531	+		Sama_1122	0.22	+0.0
1,373,531	+		Sama_1122	0.22	-1.7
1,373,531	+		Sama_1122	0.22	-1.0
1,373,531	+		Sama_1122	0.22	-1.1
1,373,531	+		Sama_1122	0.22	+0.0
1,373,532	-		Sama_1122	0.22	-0.5
1,373,532	-		Sama_1122	0.22	+0.2
1,373,532	-		Sama_1122	0.22	+0.2
1,373,532	-		Sama_1122	0.22	-2.2
1,373,532	-		Sama_1122	0.22	+0.1
1,373,532	-		Sama_1122	0.22	+0.3
1,373,532	-		Sama_1122	0.22	-0.5
1,373,532	-		Sama_1122	0.22	+0.1
1,373,532	-		Sama_1122	0.22	+0.1
1,373,553	-		Sama_1122	0.25	+1.3
1,373,553	-		Sama_1122	0.25	-0.3
1,373,607	+		Sama_1122	0.32	-0.0
1,373,607	+		Sama_1122	0.32	-0.2
1,373,608	-		Sama_1122	0.32	+1.5
1,373,608	-		Sama_1122	0.32	-0.8
1,373,643	+		Sama_1122	0.36	+1.1
1,373,706	+		Sama_1122	0.44	-0.3
1,373,706	+		Sama_1122	0.44	-3.4
1,373,707	-		Sama_1122	0.45	-1.8
1,373,707	-		Sama_1122	0.45	-2.2
1,373,719	-		Sama_1122	0.46	+1.3
1,373,738	+		Sama_1122	0.49	-0.3
1,373,738	+		Sama_1122	0.49	+0.8
1,373,739	-		Sama_1122	0.49	+0.1
1,373,739	-		Sama_1122	0.49	-0.5
1,373,739	-		Sama_1122	0.49	-2.2
1,373,795	+		Sama_1122	0.56	-2.2
1,373,795	+		Sama_1122	0.56	-1.9
1,373,795	+		Sama_1122	0.56	+0.7
1,373,795	+		Sama_1122	0.56	+0.2
1,373,795	+		Sama_1122	0.56	-1.4
1,373,795	+		Sama_1122	0.56	-0.4
1,373,795	+		Sama_1122	0.56	-0.1
1,373,795	+		Sama_1122	0.56	-0.5
1,373,795	+		Sama_1122	0.56	+0.3
1,373,795	+		Sama_1122	0.56	+1.7
1,373,795	+		Sama_1122	0.56	+1.5
1,373,795	+		Sama_1122	0.56	-2.6
1,373,796	-		Sama_1122	0.56	-1.5
1,373,796	-		Sama_1122	0.56	+0.2
1,373,796	-		Sama_1122	0.56	-0.4
1,373,796	-		Sama_1122	0.56	-0.5
1,373,796	-		Sama_1122	0.56	-1.5
1,373,796	-		Sama_1122	0.56	+0.8
1,373,796	-		Sama_1122	0.56	+0.5
1,373,796	-		Sama_1122	0.56	-1.7
1,373,887	+		Sama_1122	0.68	+1.0
1,373,887	+		Sama_1122	0.68	-2.2
1,373,887	+		Sama_1122	0.68	+0.2
1,373,887	+		Sama_1122	0.68	+0.3
1,373,888	-		Sama_1122	0.68	+0.2
1,373,911	+		Sama_1122	0.71	-1.5
1,373,911	+		Sama_1122	0.71	+0.9
1,373,911	+		Sama_1122	0.71	-0.0
1,373,912	-		Sama_1122	0.71	-0.1
1,373,955	+		Sama_1122	0.77	-1.9
1,373,956	-		Sama_1122	0.77	+0.2
1,373,985	+		Sama_1122	0.80	-0.7
1,374,163	-				+0.3
1,374,173	+		Sama_1123	0.12	+1.7
1,374,173	+		Sama_1123	0.12	+0.3
1,374,179	+		Sama_1123	0.14	-0.9
1,374,204	+		Sama_1123	0.22	+0.2
1,374,278	+		Sama_1123	0.46	-0.8
1,374,278	+		Sama_1123	0.46	+0.3
1,374,279	-		Sama_1123	0.47	+1.7
1,374,327	+		Sama_1123	0.62	-0.7
1,374,339	-		Sama_1123	0.66	+0.4
1,374,339	-		Sama_1123	0.66	-1.6
1,374,403	+		Sama_1123	0.87	+0.3
1,374,443	+				+1.9
1,374,443	+				+2.6
1,374,443	+				-0.6
1,374,443	+				-0.2
1,374,444	-				+0.0
1,374,444	-				+1.3
1,374,444	-				+0.9
1,374,508	-				-0.4
1,374,574	+				+2.1
1,374,574	+				-0.8
1,374,575	-				+1.8
1,374,575	-				-0.7
1,374,600	+				+0.9
1,374,600	+				-0.2
1,374,601	-				+0.4
1,374,705	-		Sama_1124	0.33	-0.4
1,374,719	-		Sama_1124	0.37	+0.7
1,374,845	-		Sama_1124	0.72	-1.8
1,374,886	+		Sama_1124	0.83	-0.3
1,374,889	+		Sama_1124	0.84	-0.0
1,374,890	-		Sama_1124	0.85	-0.7
1,374,890	-		Sama_1124	0.85	-0.3
1,374,890	-		Sama_1124	0.85	+3.1
1,374,890	-		Sama_1124	0.85	-0.9
1,374,947	+				+0.2
1,374,947	+				+0.3
1,374,947	+				+0.2
1,374,947	+				+0.2
1,374,948	-				-0.4
1,374,948	-				-0.8
1,374,948	-				-0.2
1,374,952	-				+1.4
1,374,952	-				-0.0
1,374,952	-				-0.6
1,374,952	-				-0.2
1,374,955	+				+0.2
1,375,018	+		Sama_1125	0.31	-0.5
1,375,078	+		Sama_1125	0.57	-1.9
1,375,078	+		Sama_1125	0.57	+0.4
1,375,078	+		Sama_1125	0.57	-0.4
1,375,078	+		Sama_1125	0.57	-0.7
1,375,078	+		Sama_1125	0.57	+0.4
1,375,078	+		Sama_1125	0.57	+0.3
1,375,078	+		Sama_1125	0.57	-1.6
1,375,078	+		Sama_1125	0.57	-1.7
1,375,078	+		Sama_1125	0.57	-2.1
1,375,078	+		Sama_1125	0.57	+0.4
1,375,078	+		Sama_1125	0.57	+0.5
1,375,078	+		Sama_1125	0.57	-0.4
1,375,078	+		Sama_1125	0.57	+0.8
1,375,079	-		Sama_1125	0.58	+0.5
1,375,079	-		Sama_1125	0.58	-0.1
1,375,079	-		Sama_1125	0.58	-0.3
1,375,079	-		Sama_1125	0.58	-1.8
1,375,079	-		Sama_1125	0.58	+0.7
1,375,079	-		Sama_1125	0.58	-2.4
1,375,079	-		Sama_1125	0.58	+0.9
1,375,079	-		Sama_1125	0.58	-0.1
1,375,079	-		Sama_1125	0.58	+0.3
1,375,079	-		Sama_1125	0.58	+0.2
1,375,079	-		Sama_1125	0.58	+0.4
1,375,079	-		Sama_1125	0.58	-2.2
1,375,080	+		Sama_1125	0.58	+0.1
1,375,080	+		Sama_1125	0.58	-0.5
1,375,080	+		Sama_1125	0.58	-0.7
1,375,080	+		Sama_1125	0.58	-0.2
1,375,080	+		Sama_1125	0.58	-2.1
1,375,081	-		Sama_1125	0.58	-2.2
1,375,081	-		Sama_1125	0.58	-0.7
1,375,081	-		Sama_1125	0.58	+0.2
1,375,083	+		Sama_1125	0.59	+0.3
1,375,083	+		Sama_1125	0.59	-3.3
1,375,083	+		Sama_1125	0.59	-0.5
1,375,083	+		Sama_1125	0.59	+0.3
1,375,083	+		Sama_1125	0.59	-0.7
1,375,084	-		Sama_1125	0.60	-0.0
1,375,113	+		Sama_1125	0.72	+0.8
1,375,113	+		Sama_1125	0.72	+0.2
1,375,113	+		Sama_1125	0.72	-0.5
1,375,113	+		Sama_1125	0.72	+0.1
1,375,113	+		Sama_1125	0.72	+0.4
1,375,114	-		Sama_1125	0.73	-1.8