Strain Fitness in Shewanella amazonensis SB2B around Sama_0602

Experiment: L-Threonine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0601 and Sama_0602 are separated by 556 nucleotidesSama_0602 and Sama_0603 are separated by 397 nucleotides Sama_0601: Sama_0601 - two-component response regulator (RefSeq), at 752,820 to 753,536 _0601 Sama_0602: Sama_0602 - hypothetical protein (RefSeq), at 754,093 to 754,584 _0602 Sama_0603: Sama_0603 - aspartate kinase III (RefSeq), at 754,982 to 756,340 _0603 Position (kb) 754 755Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 753.632 kb on - strandat 753.645 kb on - strandat 753.645 kb on - strandat 753.673 kb on - strandat 753.679 kb on - strandat 753.679 kb on - strandat 753.777 kb on - strandat 753.779 kb on - strandat 753.779 kb on - strandat 753.779 kb on - strandat 753.779 kb on - strandat 753.829 kb on + strandat 753.959 kb on - strandat 753.982 kb on + strandat 753.990 kb on - strandat 754.007 kb on - strandat 754.057 kb on + strandat 754.070 kb on + strandat 754.075 kb on + strandat 754.076 kb on - strandat 754.076 kb on - strandat 754.098 kb on + strandat 754.099 kb on - strandat 754.141 kb on + strandat 754.141 kb on + strandat 754.141 kb on + strandat 754.141 kb on + strandat 754.141 kb on + strandat 754.142 kb on - strandat 754.200 kb on + strand, within Sama_0602at 754.200 kb on + strand, within Sama_0602at 754.210 kb on + strand, within Sama_0602at 754.210 kb on + strand, within Sama_0602at 754.210 kb on + strand, within Sama_0602at 754.210 kb on + strand, within Sama_0602at 754.211 kb on - strand, within Sama_0602at 754.211 kb on - strand, within Sama_0602at 754.211 kb on - strand, within Sama_0602at 754.211 kb on - strand, within Sama_0602at 754.212 kb on + strand, within Sama_0602at 754.212 kb on + strand, within Sama_0602at 754.212 kb on + strand, within Sama_0602at 754.212 kb on + strand, within Sama_0602at 754.213 kb on - strand, within Sama_0602at 754.213 kb on - strand, within Sama_0602at 754.213 kb on - strand, within Sama_0602at 754.218 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.280 kb on + strand, within Sama_0602at 754.281 kb on - strand, within Sama_0602at 754.281 kb on - strand, within Sama_0602at 754.281 kb on - strand, within Sama_0602at 754.281 kb on - strand, within Sama_0602at 754.281 kb on - strand, within Sama_0602at 754.281 kb on - strand, within Sama_0602at 754.281 kb on - strand, within Sama_0602at 754.281 kb on - strand, within Sama_0602at 754.301 kb on - strand, within Sama_0602at 754.395 kb on + strand, within Sama_0602at 754.395 kb on + strand, within Sama_0602at 754.395 kb on + strand, within Sama_0602at 754.396 kb on - strand, within Sama_0602at 754.396 kb on - strand, within Sama_0602at 754.396 kb on - strand, within Sama_0602at 754.396 kb on - strand, within Sama_0602at 754.396 kb on - strand, within Sama_0602at 754.399 kb on + strand, within Sama_0602at 754.399 kb on + strand, within Sama_0602at 754.400 kb on - strand, within Sama_0602at 754.417 kb on + strand, within Sama_0602at 754.417 kb on + strand, within Sama_0602at 754.417 kb on + strand, within Sama_0602at 754.418 kb on - strand, within Sama_0602at 754.418 kb on - strand, within Sama_0602at 754.418 kb on - strand, within Sama_0602at 754.418 kb on - strand, within Sama_0602at 754.420 kb on + strand, within Sama_0602at 754.420 kb on + strand, within Sama_0602at 754.421 kb on - strand, within Sama_0602at 754.421 kb on - strand, within Sama_0602at 754.421 kb on - strand, within Sama_0602at 754.421 kb on - strand, within Sama_0602at 754.421 kb on - strand, within Sama_0602at 754.554 kb on + strandat 754.555 kb on - strandat 754.555 kb on - strandat 754.608 kb on + strandat 754.609 kb on - strandat 754.629 kb on - strandat 754.636 kb on + strandat 754.636 kb on + strandat 754.637 kb on - strandat 754.637 kb on - strandat 754.691 kb on + strandat 754.691 kb on + strandat 754.691 kb on + strandat 754.691 kb on + strandat 754.692 kb on - strandat 754.692 kb on - strandat 754.695 kb on + strandat 754.695 kb on + strandat 754.819 kb on + strandat 754.819 kb on + strandat 754.873 kb on + strandat 754.873 kb on + strandat 754.873 kb on + strandat 754.874 kb on - strandat 754.915 kb on + strandat 754.915 kb on + strandat 754.934 kb on + strandat 754.934 kb on + strandat 754.935 kb on - strandat 754.995 kb on + strandat 754.995 kb on + strandat 755.055 kb on + strandat 755.055 kb on + strandat 755.055 kb on + strandat 755.055 kb on + strandat 755.075 kb on - strandat 755.124 kb on + strand, within Sama_0603at 755.124 kb on + strand, within Sama_0603at 755.190 kb on + strand, within Sama_0603at 755.195 kb on + strand, within Sama_0603at 755.195 kb on + strand, within Sama_0603at 755.195 kb on + strand, within Sama_0603at 755.196 kb on - strand, within Sama_0603at 755.196 kb on - strand, within Sama_0603at 755.514 kb on + strand, within Sama_0603at 755.514 kb on + strand, within Sama_0603at 755.514 kb on + strand, within Sama_0603at 755.514 kb on + strand, within Sama_0603at 755.514 kb on + strand, within Sama_0603at 755.514 kb on + strand, within Sama_0603at 755.514 kb on + strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.515 kb on - strand, within Sama_0603at 755.517 kb on - strand, within Sama_0603

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (N)
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753,632 - -3.3
753,645 - -1.4
753,645 - -2.0
753,673 - -3.1
753,679 - -1.8
753,679 - -0.4
753,777 - +1.4
753,779 - -2.5
753,779 - -1.4
753,779 - -1.8
753,779 - -2.1
753,829 + -2.0
753,959 - +0.3
753,982 + -1.1
753,990 - +1.8
754,007 - -3.0
754,057 + -3.0
754,070 + +0.8
754,075 + -1.2
754,076 - -0.1
754,076 - +0.4
754,098 + -1.2
754,099 - -0.1
754,141 + -0.9
754,141 + -0.4
754,141 + -0.6
754,141 + +0.1
754,141 + +0.7
754,142 - +0.6
754,200 + Sama_0602 0.22 +0.5
754,200 + Sama_0602 0.22 -0.4
754,210 + Sama_0602 0.24 -0.2
754,210 + Sama_0602 0.24 +2.2
754,210 + Sama_0602 0.24 +0.3
754,210 + Sama_0602 0.24 -0.6
754,211 - Sama_0602 0.24 +1.8
754,211 - Sama_0602 0.24 +1.2
754,211 - Sama_0602 0.24 -0.5
754,211 - Sama_0602 0.24 +1.2
754,212 + Sama_0602 0.24 +0.8
754,212 + Sama_0602 0.24 +0.4
754,212 + Sama_0602 0.24 +1.4
754,212 + Sama_0602 0.24 -0.4
754,213 - Sama_0602 0.24 -0.9
754,213 - Sama_0602 0.24 +1.5
754,213 - Sama_0602 0.24 +0.0
754,218 + Sama_0602 0.25 -1.5
754,280 + Sama_0602 0.38 +1.3
754,280 + Sama_0602 0.38 -0.5
754,280 + Sama_0602 0.38 +0.4
754,280 + Sama_0602 0.38 +0.1
754,280 + Sama_0602 0.38 -0.5
754,280 + Sama_0602 0.38 -0.2
754,280 + Sama_0602 0.38 +2.5
754,280 + Sama_0602 0.38 +3.1
754,280 + Sama_0602 0.38 -2.0
754,280 + Sama_0602 0.38 -0.5
754,280 + Sama_0602 0.38 +0.1
754,281 - Sama_0602 0.38 +0.2
754,281 - Sama_0602 0.38 +0.0
754,281 - Sama_0602 0.38 +2.5
754,281 - Sama_0602 0.38 -0.1
754,281 - Sama_0602 0.38 -0.4
754,281 - Sama_0602 0.38 -1.6
754,281 - Sama_0602 0.38 -0.4
754,281 - Sama_0602 0.38 -0.0
754,301 - Sama_0602 0.42 +1.5
754,395 + Sama_0602 0.61 +1.0
754,395 + Sama_0602 0.61 +0.5
754,395 + Sama_0602 0.61 +0.0
754,396 - Sama_0602 0.62 +1.1
754,396 - Sama_0602 0.62 +1.4
754,396 - Sama_0602 0.62 +0.5
754,396 - Sama_0602 0.62 +0.9
754,396 - Sama_0602 0.62 -0.6
754,399 + Sama_0602 0.62 +1.6
754,399 + Sama_0602 0.62 +0.1
754,400 - Sama_0602 0.62 +0.3
754,417 + Sama_0602 0.66 -0.1
754,417 + Sama_0602 0.66 +0.9
754,417 + Sama_0602 0.66 +1.0
754,418 - Sama_0602 0.66 +3.3
754,418 - Sama_0602 0.66 +1.1
754,418 - Sama_0602 0.66 +2.0
754,418 - Sama_0602 0.66 +0.0
754,420 + Sama_0602 0.66 +0.1
754,420 + Sama_0602 0.66 +0.2
754,421 - Sama_0602 0.67 +0.5
754,421 - Sama_0602 0.67 +0.4
754,421 - Sama_0602 0.67 +2.3
754,421 - Sama_0602 0.67 -1.7
754,421 - Sama_0602 0.67 +1.7
754,554 + +0.6
754,555 - +0.6
754,555 - -0.4
754,608 + +2.0
754,609 - +0.1
754,629 - -0.6
754,636 + -0.1
754,636 + +0.8
754,637 - +1.7
754,637 - -1.2
754,691 + -0.8
754,691 + +0.9
754,691 + -0.6
754,691 + -1.7
754,692 - -1.1
754,692 - -0.6
754,695 + -0.1
754,695 + +1.4
754,819 + -0.7
754,819 + +0.6
754,873 + -1.6
754,873 + -1.6
754,873 + -1.1
754,874 - -1.3
754,915 + -0.8
754,915 + +1.3
754,934 + -0.6
754,934 + -1.9
754,935 - -0.4
754,995 + -1.3
754,995 + -0.8
755,055 + -2.0
755,055 + -1.9
755,055 + -2.6
755,055 + -1.3
755,075 - -2.5
755,124 + Sama_0603 0.10 -0.8
755,124 + Sama_0603 0.10 -1.4
755,190 + Sama_0603 0.15 -0.1
755,195 + Sama_0603 0.16 -3.3
755,195 + Sama_0603 0.16 -0.1
755,195 + Sama_0603 0.16 -0.2
755,196 - Sama_0603 0.16 -0.0
755,196 - Sama_0603 0.16 +0.2
755,514 + Sama_0603 0.39 -1.3
755,514 + Sama_0603 0.39 -0.7
755,514 + Sama_0603 0.39 -0.4
755,514 + Sama_0603 0.39 -0.6
755,514 + Sama_0603 0.39 -2.0
755,514 + Sama_0603 0.39 +0.1
755,514 + Sama_0603 0.39 -1.0
755,515 - Sama_0603 0.39 -0.9
755,515 - Sama_0603 0.39 -0.2
755,515 - Sama_0603 0.39 -1.6
755,515 - Sama_0603 0.39 -0.5
755,515 - Sama_0603 0.39 -2.4
755,515 - Sama_0603 0.39 -2.2
755,515 - Sama_0603 0.39 -2.3
755,515 - Sama_0603 0.39 -0.6
755,515 - Sama_0603 0.39 -1.1
755,515 - Sama_0603 0.39 -0.4
755,517 - Sama_0603 0.39 +0.9

Or see this region's nucleotide sequence