Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1346

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1345 and Dshi_1346 overlap by 4 nucleotidesDshi_1346 and Dshi_1347 are separated by 97 nucleotidesDshi_1347 and Dshi_1348 are separated by 44 nucleotides Dshi_1345: Dshi_1345 - Sec-independent protein translocase, TatC subunit (RefSeq), at 1,397,430 to 1,398,470 _1345 Dshi_1346: Dshi_1346 - protein of unknown function DUF815 (RefSeq), at 1,398,467 to 1,399,318 _1346 Dshi_1347: Dshi_1347 - hypothetical protein (RefSeq), at 1,399,416 to 1,400,000 _1347 Dshi_1348: Dshi_1348 - multiple antibiotic resistance (MarC)-related protein (RefSeq), at 1,400,045 to 1,400,671 _1348 Position (kb) 1398 1399 1400Strain fitness (log2 ratio) -1 0 1at 1398.650 kb on + strand, within Dshi_1346at 1398.712 kb on + strand, within Dshi_1346at 1398.712 kb on + strand, within Dshi_1346at 1398.748 kb on + strand, within Dshi_1346at 1398.893 kb on + strand, within Dshi_1346at 1399.028 kb on + strand, within Dshi_1346at 1399.206 kb on + strand, within Dshi_1346at 1399.240 kb on - strandat 1399.488 kb on + strand, within Dshi_1347at 1399.734 kb on + strand, within Dshi_1347at 1399.852 kb on + strand, within Dshi_1347at 1400.012 kb on - strandat 1400.257 kb on - strand, within Dshi_1348

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,398,650 + Dshi_1346 0.21 +0.0
1,398,712 + Dshi_1346 0.29 -0.2
1,398,712 + Dshi_1346 0.29 +0.8
1,398,748 + Dshi_1346 0.33 -0.5
1,398,893 + Dshi_1346 0.50 -0.1
1,399,028 + Dshi_1346 0.66 -0.1
1,399,206 + Dshi_1346 0.87 +0.1
1,399,240 - -1.1
1,399,488 + Dshi_1347 0.12 -0.6
1,399,734 + Dshi_1347 0.54 +0.1
1,399,852 + Dshi_1347 0.75 +0.2
1,400,012 - -0.3
1,400,257 - Dshi_1348 0.34 +0.7

Or see this region's nucleotide sequence