Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1343

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1341 and Dshi_1342 are separated by 3 nucleotidesDshi_1342 and Dshi_1343 are separated by 193 nucleotidesDshi_1343 and Dshi_1344 are separated by 18 nucleotidesDshi_1344 and Dshi_1345 are separated by 8 nucleotides Dshi_1341: Dshi_1341 - ABC transporter related (RefSeq), at 1,394,766 to 1,395,854 _1341 Dshi_1342: Dshi_1342 - Helix-turn-helix type 11 domain protein (RefSeq), at 1,395,858 to 1,396,517 _1342 Dshi_1343: Dshi_1343 - sec-independent translocation protein mttA/Hcf106 (RefSeq), at 1,396,711 to 1,396,935 _1343 Dshi_1344: Dshi_1344 - twin-arginine translocation protein, TatB subunit (RefSeq), at 1,396,954 to 1,397,421 _1344 Dshi_1345: Dshi_1345 - Sec-independent protein translocase, TatC subunit (RefSeq), at 1,397,430 to 1,398,470 _1345 Position (kb) 1396 1397Strain fitness (log2 ratio) -1 0 1at 1395.965 kb on - strand, within Dshi_1342at 1396.355 kb on - strand, within Dshi_1342at 1396.485 kb on + strandat 1396.510 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,395,965 - Dshi_1342 0.16 -1.2
1,396,355 - Dshi_1342 0.75 -0.5
1,396,485 + +0.2
1,396,510 - -0.4

Or see this region's nucleotide sequence