Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0586

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0584 and Dshi_0585 overlap by 23 nucleotidesDshi_0585 and Dshi_0586 are separated by 184 nucleotidesDshi_0586 and Dshi_0587 overlap by 29 nucleotidesDshi_0587 and Dshi_0588 are separated by 77 nucleotides Dshi_0584: Dshi_0584 - lipopolysaccharide biosynthesis protein (RefSeq), at 574,921 to 576,630 _0584 Dshi_0585: Dshi_0585 - ABC transporter related (RefSeq), at 576,608 to 577,267 _0585 Dshi_0586: Dshi_0586 - permease (RefSeq), at 577,452 to 578,498 _0586 Dshi_0587: Dshi_0587 - putative transcriptional regulator, ArsR family (RefSeq), at 578,470 to 578,814 _0587 Dshi_0588: Dshi_0588 - uracil-DNA glycosylase superfamily (RefSeq), at 578,892 to 579,500 _0588 Dshi_0589: Dshi_0589 - hypothetical protein (RefSeq), at 579,497 to 580,282 _0589 Position (kb) 577 578 579Strain fitness (log2 ratio) -2 -1 0 1at 576.574 kb on - strandat 576.619 kb on - strandat 576.634 kb on + strandat 576.655 kb on + strandat 576.736 kb on + strand, within Dshi_0585at 576.811 kb on - strand, within Dshi_0585at 576.815 kb on + strand, within Dshi_0585at 576.878 kb on + strand, within Dshi_0585at 576.950 kb on + strand, within Dshi_0585at 577.016 kb on + strand, within Dshi_0585at 577.018 kb on + strand, within Dshi_0585at 577.018 kb on + strand, within Dshi_0585at 577.025 kb on - strand, within Dshi_0585at 577.027 kb on - strand, within Dshi_0585at 577.119 kb on + strand, within Dshi_0585at 577.175 kb on + strand, within Dshi_0585at 577.175 kb on + strand, within Dshi_0585at 577.183 kb on - strand, within Dshi_0585at 577.210 kb on - strandat 577.275 kb on + strandat 577.277 kb on + strandat 577.277 kb on + strandat 577.283 kb on - strandat 577.285 kb on - strandat 577.285 kb on - strandat 577.326 kb on + strandat 577.374 kb on + strandat 577.374 kb on + strandat 577.374 kb on + strandat 577.384 kb on + strandat 577.385 kb on + strandat 577.393 kb on - strandat 577.393 kb on - strandat 577.398 kb on + strandat 577.403 kb on + strandat 577.411 kb on - strandat 577.413 kb on + strandat 577.413 kb on + strandat 577.413 kb on + strandat 577.421 kb on - strandat 577.421 kb on - strandat 577.439 kb on - strandat 577.543 kb on + strandat 577.558 kb on - strand, within Dshi_0586at 577.596 kb on + strand, within Dshi_0586at 577.615 kb on + strand, within Dshi_0586at 577.615 kb on + strand, within Dshi_0586at 577.623 kb on - strand, within Dshi_0586at 577.644 kb on + strand, within Dshi_0586at 577.672 kb on - strand, within Dshi_0586at 577.677 kb on - strand, within Dshi_0586at 577.709 kb on + strand, within Dshi_0586at 577.717 kb on - strand, within Dshi_0586at 577.717 kb on - strand, within Dshi_0586at 577.717 kb on - strand, within Dshi_0586at 577.784 kb on - strand, within Dshi_0586at 577.796 kb on - strand, within Dshi_0586at 577.869 kb on + strand, within Dshi_0586at 577.875 kb on + strand, within Dshi_0586at 577.969 kb on - strand, within Dshi_0586at 577.974 kb on - strand, within Dshi_0586at 577.974 kb on - strand, within Dshi_0586at 578.001 kb on - strand, within Dshi_0586at 578.073 kb on + strand, within Dshi_0586at 578.224 kb on - strand, within Dshi_0586at 578.256 kb on - strand, within Dshi_0586at 578.324 kb on + strand, within Dshi_0586at 578.387 kb on + strand, within Dshi_0586at 578.402 kb on + strandat 578.402 kb on + strandat 578.410 kb on - strandat 578.424 kb on + strandat 578.437 kb on - strandat 578.452 kb on + strandat 578.480 kb on + strandat 578.488 kb on - strandat 578.584 kb on - strand, within Dshi_0587at 578.628 kb on + strand, within Dshi_0587at 578.701 kb on - strand, within Dshi_0587at 578.884 kb on - strandat 579.090 kb on - strand, within Dshi_0588at 579.109 kb on - strand, within Dshi_0588at 579.232 kb on - strand, within Dshi_0588at 579.232 kb on - strand, within Dshi_0588at 579.232 kb on - strand, within Dshi_0588at 579.232 kb on - strand, within Dshi_0588at 579.235 kb on + strand, within Dshi_0588at 579.322 kb on + strand, within Dshi_0588at 579.418 kb on + strand, within Dshi_0588at 579.426 kb on - strand, within Dshi_0588at 579.427 kb on - strand, within Dshi_0588at 579.488 kb on + strandat 579.488 kb on + strandat 579.488 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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576,574 - +0.4
576,619 - -0.3
576,634 + -0.3
576,655 + -0.1
576,736 + Dshi_0585 0.19 +1.6
576,811 - Dshi_0585 0.31 +1.4
576,815 + Dshi_0585 0.31 +0.1
576,878 + Dshi_0585 0.41 +0.7
576,950 + Dshi_0585 0.52 -0.0
577,016 + Dshi_0585 0.62 +1.0
577,018 + Dshi_0585 0.62 -0.9
577,018 + Dshi_0585 0.62 +0.5
577,025 - Dshi_0585 0.63 +0.9
577,027 - Dshi_0585 0.63 -0.8
577,119 + Dshi_0585 0.77 -0.2
577,175 + Dshi_0585 0.86 -0.4
577,175 + Dshi_0585 0.86 +1.7
577,183 - Dshi_0585 0.87 +0.2
577,210 - +0.3
577,275 + -0.0
577,277 + +0.3
577,277 + -0.3
577,283 - +0.4
577,285 - +0.2
577,285 - -0.3
577,326 + +0.2
577,374 + -0.6
577,374 + -0.7
577,374 + +0.8
577,384 + +0.5
577,385 + +0.1
577,393 - -0.3
577,393 - -0.2
577,398 + +0.7
577,403 + +0.2
577,411 - -0.5
577,413 + -0.1
577,413 + +0.3
577,413 + +0.3
577,421 - -0.8
577,421 - +1.0
577,439 - -0.1
577,543 + +0.2
577,558 - Dshi_0586 0.10 -1.6
577,596 + Dshi_0586 0.14 +0.1
577,615 + Dshi_0586 0.16 -0.7
577,615 + Dshi_0586 0.16 +0.1
577,623 - Dshi_0586 0.16 +0.6
577,644 + Dshi_0586 0.18 +0.2
577,672 - Dshi_0586 0.21 -0.5
577,677 - Dshi_0586 0.21 -0.2
577,709 + Dshi_0586 0.25 -0.3
577,717 - Dshi_0586 0.25 -0.3
577,717 - Dshi_0586 0.25 -0.1
577,717 - Dshi_0586 0.25 +0.0
577,784 - Dshi_0586 0.32 -0.4
577,796 - Dshi_0586 0.33 -0.1
577,869 + Dshi_0586 0.40 -0.7
577,875 + Dshi_0586 0.40 +0.1
577,969 - Dshi_0586 0.49 -0.5
577,974 - Dshi_0586 0.50 +0.6
577,974 - Dshi_0586 0.50 +1.0
578,001 - Dshi_0586 0.52 -1.3
578,073 + Dshi_0586 0.59 -0.3
578,224 - Dshi_0586 0.74 -2.3
578,256 - Dshi_0586 0.77 +0.4
578,324 + Dshi_0586 0.83 -0.4
578,387 + Dshi_0586 0.89 +0.2
578,402 + +0.3
578,402 + -0.2
578,410 - -1.0
578,424 + -0.1
578,437 - -0.9
578,452 + +0.0
578,480 + +0.1
578,488 - +0.3
578,584 - Dshi_0587 0.33 +0.9
578,628 + Dshi_0587 0.46 -0.5
578,701 - Dshi_0587 0.67 +1.6
578,884 - -0.4
579,090 - Dshi_0588 0.33 +0.0
579,109 - Dshi_0588 0.36 -0.4
579,232 - Dshi_0588 0.56 +0.7
579,232 - Dshi_0588 0.56 -0.9
579,232 - Dshi_0588 0.56 +0.5
579,232 - Dshi_0588 0.56 +0.5
579,235 + Dshi_0588 0.56 -0.0
579,322 + Dshi_0588 0.71 -0.2
579,418 + Dshi_0588 0.86 -0.6
579,426 - Dshi_0588 0.88 -0.5
579,427 - Dshi_0588 0.88 -1.2
579,488 + -0.4
579,488 + -0.5
579,488 + -2.4

Or see this region's nucleotide sequence