Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_936 and HP15_937 are separated by 24 nucleotides HP15_937 and HP15_938 overlap by 8 nucleotides HP15_938 and HP15_939 are separated by 52 nucleotides
HP15_936: HP15_936 - transcriptional regulator, LysR family protein, at 951,248 to 952,138
_936
HP15_937: HP15_937 - spermidine/putrescine ABC transporter, permease protein, at 952,163 to 952,990
_937
HP15_938: HP15_938 - spermidine/putrescine ABC transporter, permease protein, at 952,983 to 953,864
_938
HP15_939: HP15_939 - spermidine/putrescine ABC transporter ATPase subunit, at 953,917 to 955,035
_939
Position (kb) 952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 951.309 kb on - strand at 951.321 kb on + strand at 951.321 kb on + strand at 951.328 kb on - strand at 951.329 kb on - strand at 951.329 kb on - strand at 951.381 kb on + strand, within HP15_936 at 951.381 kb on + strand, within HP15_936 at 951.389 kb on - strand, within HP15_936 at 951.533 kb on - strand, within HP15_936 at 951.608 kb on - strand, within HP15_936 at 951.626 kb on - strand, within HP15_936 at 951.689 kb on + strand, within HP15_936 at 951.696 kb on + strand, within HP15_936 at 951.696 kb on + strand, within HP15_936 at 951.704 kb on - strand, within HP15_936 at 951.711 kb on + strand, within HP15_936 at 951.714 kb on - strand, within HP15_936 at 951.818 kb on + strand, within HP15_936 at 951.938 kb on - strand, within HP15_936 at 952.032 kb on + strand, within HP15_936 at 952.082 kb on + strand at 952.088 kb on - strand at 952.090 kb on - strand at 952.154 kb on - strand at 952.193 kb on - strand at 952.292 kb on - strand, within HP15_937 at 952.292 kb on - strand, within HP15_937 at 952.453 kb on + strand, within HP15_937 at 952.471 kb on - strand, within HP15_937 at 952.471 kb on - strand, within HP15_937 at 952.518 kb on + strand, within HP15_937 at 952.542 kb on - strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.604 kb on + strand, within HP15_937 at 952.660 kb on + strand, within HP15_937 at 952.688 kb on + strand, within HP15_937 at 952.796 kb on + strand, within HP15_937 at 952.841 kb on + strand, within HP15_937 at 952.914 kb on + strand at 953.198 kb on + strand, within HP15_938 at 953.237 kb on + strand, within HP15_938 at 953.303 kb on + strand, within HP15_938 at 953.363 kb on - strand, within HP15_938 at 953.501 kb on + strand, within HP15_938 at 953.511 kb on - strand, within HP15_938 at 953.574 kb on + strand, within HP15_938 at 953.582 kb on - strand, within HP15_938 at 953.718 kb on - strand, within HP15_938 at 953.809 kb on - strand at 953.939 kb on - strand at 953.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 951,309 - +0.7 951,321 + -0.5 951,321 + +0.4 951,328 - -0.5 951,329 - -1.2 951,329 - -0.3 951,381 + HP15_936 0.15 -0.7 951,381 + HP15_936 0.15 -0.2 951,389 - HP15_936 0.16 +1.1 951,533 - HP15_936 0.32 +0.1 951,608 - HP15_936 0.40 +0.1 951,626 - HP15_936 0.42 +0.6 951,689 + HP15_936 0.49 -0.8 951,696 + HP15_936 0.50 +0.9 951,696 + HP15_936 0.50 +1.6 951,704 - HP15_936 0.51 -0.4 951,711 + HP15_936 0.52 +0.4 951,714 - HP15_936 0.52 +0.8 951,818 + HP15_936 0.64 -0.6 951,938 - HP15_936 0.77 +0.9 952,032 + HP15_936 0.88 -0.9 952,082 + +1.4 952,088 - +0.4 952,090 - +1.9 952,154 - +1.4 952,193 - +0.5 952,292 - HP15_937 0.16 +0.5 952,292 - HP15_937 0.16 +0.2 952,453 + HP15_937 0.35 -0.6 952,471 - HP15_937 0.37 -0.1 952,471 - HP15_937 0.37 +0.9 952,518 + HP15_937 0.43 +0.7 952,542 - HP15_937 0.46 -0.9 952,604 + HP15_937 0.53 +0.2 952,604 + HP15_937 0.53 +0.4 952,604 + HP15_937 0.53 +0.6 952,604 + HP15_937 0.53 +2.2 952,660 + HP15_937 0.60 +0.3 952,688 + HP15_937 0.63 -0.7 952,796 + HP15_937 0.76 +0.6 952,841 + HP15_937 0.82 +1.2 952,914 + -3.7 953,198 + HP15_938 0.24 -0.1 953,237 + HP15_938 0.29 +1.1 953,303 + HP15_938 0.36 -0.6 953,363 - HP15_938 0.43 -2.2 953,501 + HP15_938 0.59 -0.8 953,511 - HP15_938 0.60 +0.2 953,574 + HP15_938 0.67 -0.4 953,582 - HP15_938 0.68 +0.2 953,718 - HP15_938 0.83 +0.0 953,809 - +0.5 953,939 - +0.3 953,966 - +0.8
Or see this region's nucleotide sequence