Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_893 and HP15_894 are separated by 19 nucleotides HP15_894 and HP15_895 are separated by 159 nucleotides
HP15_893: HP15_893 - hypothetical protein, at 906,487 to 907,551
_893
HP15_894: HP15_894 - conserved hypothetical protein, secreted, at 907,571 to 909,019
_894
HP15_895: HP15_895 - serine/threonine protein kinase, at 909,179 to 910,831
_895
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 906.574 kb on - strand at 906.648 kb on + strand, within HP15_893 at 906.665 kb on + strand, within HP15_893 at 906.665 kb on + strand, within HP15_893 at 906.670 kb on + strand, within HP15_893 at 906.756 kb on + strand, within HP15_893 at 906.764 kb on - strand, within HP15_893 at 906.783 kb on + strand, within HP15_893 at 906.783 kb on + strand, within HP15_893 at 906.786 kb on - strand, within HP15_893 at 906.789 kb on + strand, within HP15_893 at 907.034 kb on - strand, within HP15_893 at 907.179 kb on - strand, within HP15_893 at 907.256 kb on - strand, within HP15_893 at 907.256 kb on - strand, within HP15_893 at 907.256 kb on - strand, within HP15_893 at 907.290 kb on + strand, within HP15_893 at 907.388 kb on + strand, within HP15_893 at 907.415 kb on + strand, within HP15_893 at 907.421 kb on - strand, within HP15_893 at 907.438 kb on - strand, within HP15_893 at 907.564 kb on + strand at 907.890 kb on - strand, within HP15_894 at 907.924 kb on - strand, within HP15_894 at 907.961 kb on - strand, within HP15_894 at 908.027 kb on + strand, within HP15_894 at 908.035 kb on - strand, within HP15_894 at 908.090 kb on + strand, within HP15_894 at 908.141 kb on + strand, within HP15_894 at 908.146 kb on + strand, within HP15_894 at 908.149 kb on - strand, within HP15_894 at 908.199 kb on - strand, within HP15_894 at 908.265 kb on + strand, within HP15_894 at 908.370 kb on - strand, within HP15_894 at 908.415 kb on + strand, within HP15_894 at 908.417 kb on - strand, within HP15_894 at 908.459 kb on - strand, within HP15_894 at 908.469 kb on - strand, within HP15_894 at 908.471 kb on + strand, within HP15_894 at 908.519 kb on - strand, within HP15_894 at 908.541 kb on + strand, within HP15_894 at 908.557 kb on - strand, within HP15_894 at 908.597 kb on + strand, within HP15_894 at 908.615 kb on + strand, within HP15_894 at 908.648 kb on - strand, within HP15_894 at 908.648 kb on - strand, within HP15_894 at 908.658 kb on - strand, within HP15_894 at 908.670 kb on - strand, within HP15_894 at 908.682 kb on - strand, within HP15_894 at 908.793 kb on - strand, within HP15_894 at 908.814 kb on - strand, within HP15_894 at 908.856 kb on - strand, within HP15_894 at 908.890 kb on + strand at 908.947 kb on + strand at 908.967 kb on - strand at 908.967 kb on - strand at 909.008 kb on + strand at 909.036 kb on + strand at 909.044 kb on - strand at 909.193 kb on + strand at 909.214 kb on - strand at 909.256 kb on - strand at 909.265 kb on - strand at 909.296 kb on - strand at 909.312 kb on - strand at 909.409 kb on - strand, within HP15_895 at 909.453 kb on + strand, within HP15_895 at 909.561 kb on + strand, within HP15_895 at 909.584 kb on + strand, within HP15_895 at 909.584 kb on + strand, within HP15_895 at 909.592 kb on - strand, within HP15_895 at 909.648 kb on + strand, within HP15_895 at 909.737 kb on + strand, within HP15_895 at 909.786 kb on - strand, within HP15_895 at 909.854 kb on - strand, within HP15_895 at 909.964 kb on + strand, within HP15_895 at 910.006 kb on + strand, within HP15_895
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 906,574 - +1.1 906,648 + HP15_893 0.15 +0.8 906,665 + HP15_893 0.17 +1.1 906,665 + HP15_893 0.17 -1.2 906,670 + HP15_893 0.17 -2.4 906,756 + HP15_893 0.25 +1.0 906,764 - HP15_893 0.26 -0.9 906,783 + HP15_893 0.28 +0.6 906,783 + HP15_893 0.28 -0.0 906,786 - HP15_893 0.28 +1.5 906,789 + HP15_893 0.28 -0.1 907,034 - HP15_893 0.51 +0.6 907,179 - HP15_893 0.65 +0.5 907,256 - HP15_893 0.72 +0.9 907,256 - HP15_893 0.72 -0.9 907,256 - HP15_893 0.72 -0.7 907,290 + HP15_893 0.75 -0.9 907,388 + HP15_893 0.85 -1.0 907,415 + HP15_893 0.87 +1.1 907,421 - HP15_893 0.88 -2.2 907,438 - HP15_893 0.89 +0.2 907,564 + +0.7 907,890 - HP15_894 0.22 +0.8 907,924 - HP15_894 0.24 +1.4 907,961 - HP15_894 0.27 +0.9 908,027 + HP15_894 0.31 +0.2 908,035 - HP15_894 0.32 -1.0 908,090 + HP15_894 0.36 +1.9 908,141 + HP15_894 0.39 +0.2 908,146 + HP15_894 0.40 +1.5 908,149 - HP15_894 0.40 +0.0 908,199 - HP15_894 0.43 +0.3 908,265 + HP15_894 0.48 +0.8 908,370 - HP15_894 0.55 +1.8 908,415 + HP15_894 0.58 +0.6 908,417 - HP15_894 0.58 -0.0 908,459 - HP15_894 0.61 +0.4 908,469 - HP15_894 0.62 +0.2 908,471 + HP15_894 0.62 -0.8 908,519 - HP15_894 0.65 +0.1 908,541 + HP15_894 0.67 +0.1 908,557 - HP15_894 0.68 +1.0 908,597 + HP15_894 0.71 +2.4 908,615 + HP15_894 0.72 +0.5 908,648 - HP15_894 0.74 -0.6 908,648 - HP15_894 0.74 +0.5 908,658 - HP15_894 0.75 -1.4 908,670 - HP15_894 0.76 +0.1 908,682 - HP15_894 0.77 +0.6 908,793 - HP15_894 0.84 +1.4 908,814 - HP15_894 0.86 +1.0 908,856 - HP15_894 0.89 -0.0 908,890 + +0.7 908,947 + -0.7 908,967 - -0.4 908,967 - +0.3 909,008 + +0.6 909,036 + +0.0 909,044 - +0.2 909,193 + +0.4 909,214 - -0.5 909,256 - -1.5 909,265 - -0.7 909,296 - +2.6 909,312 - +0.1 909,409 - HP15_895 0.14 -1.1 909,453 + HP15_895 0.17 -0.1 909,561 + HP15_895 0.23 +0.4 909,584 + HP15_895 0.25 +2.9 909,584 + HP15_895 0.25 -1.0 909,592 - HP15_895 0.25 +0.6 909,648 + HP15_895 0.28 +0.2 909,737 + HP15_895 0.34 +2.1 909,786 - HP15_895 0.37 -0.5 909,854 - HP15_895 0.41 +0.0 909,964 + HP15_895 0.47 +0.4 910,006 + HP15_895 0.50 -0.4
Or see this region's nucleotide sequence