Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_661 and HP15_662 are separated by 2 nucleotides HP15_662 and HP15_663 overlap by 8 nucleotides HP15_663 and HP15_664 overlap by 1 nucleotides HP15_664 and HP15_665 are separated by 51 nucleotides
HP15_661: HP15_661 - hypothetical protein, at 683,279 to 684,058
_661
HP15_662: HP15_662 - phage tail protein I, at 684,061 to 684,636
_662
HP15_663: HP15_663 - phage baseplate assembly protein, at 684,629 to 685,549
_663
HP15_664: HP15_664 - GPW/gp25, at 685,549 to 685,887
_664
HP15_665: HP15_665 - phage-related baseplate assembly protein V, at 685,939 to 686,724
_665
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 683.647 kb on + strand, within HP15_661 at 683.728 kb on - strand, within HP15_661 at 683.769 kb on - strand, within HP15_661 at 683.840 kb on - strand, within HP15_661 at 683.845 kb on - strand, within HP15_661 at 683.903 kb on + strand, within HP15_661 at 683.908 kb on + strand, within HP15_661 at 683.911 kb on - strand, within HP15_661 at 683.950 kb on + strand, within HP15_661 at 684.024 kb on + strand at 684.032 kb on - strand at 684.122 kb on - strand, within HP15_662 at 684.187 kb on - strand, within HP15_662 at 684.194 kb on + strand, within HP15_662 at 684.196 kb on + strand, within HP15_662 at 684.196 kb on + strand, within HP15_662 at 684.406 kb on - strand, within HP15_662 at 684.474 kb on + strand, within HP15_662 at 684.488 kb on + strand, within HP15_662 at 684.495 kb on - strand, within HP15_662 at 684.567 kb on + strand, within HP15_662 at 684.635 kb on - strand at 684.682 kb on + strand at 684.716 kb on + strand at 684.721 kb on + strand, within HP15_663 at 684.721 kb on + strand, within HP15_663 at 684.721 kb on + strand, within HP15_663 at 684.729 kb on - strand, within HP15_663 at 684.746 kb on + strand, within HP15_663 at 684.773 kb on + strand, within HP15_663 at 684.901 kb on - strand, within HP15_663 at 684.968 kb on + strand, within HP15_663 at 684.970 kb on + strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 684.976 kb on - strand, within HP15_663 at 685.009 kb on + strand, within HP15_663 at 685.030 kb on - strand, within HP15_663 at 685.059 kb on + strand, within HP15_663 at 685.093 kb on + strand, within HP15_663 at 685.131 kb on + strand, within HP15_663 at 685.139 kb on - strand, within HP15_663 at 685.209 kb on + strand, within HP15_663 at 685.275 kb on - strand, within HP15_663 at 685.275 kb on - strand, within HP15_663 at 685.437 kb on + strand, within HP15_663 at 685.452 kb on + strand, within HP15_663 at 685.460 kb on - strand at 685.462 kb on + strand at 685.565 kb on - strand at 685.615 kb on + strand, within HP15_664 at 685.689 kb on - strand, within HP15_664 at 685.690 kb on + strand, within HP15_664 at 685.735 kb on - strand, within HP15_664 at 685.777 kb on - strand, within HP15_664 at 685.889 kb on - strand at 686.031 kb on + strand, within HP15_665 at 686.103 kb on - strand, within HP15_665 at 686.174 kb on - strand, within HP15_665 at 686.397 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.428 kb on + strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.436 kb on - strand, within HP15_665 at 686.456 kb on + strand, within HP15_665 at 686.456 kb on + strand, within HP15_665 at 686.459 kb on - strand, within HP15_665 at 686.469 kb on + strand, within HP15_665 at 686.492 kb on + strand, within HP15_665
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 683,647 + HP15_661 0.47 +0.7 683,728 - HP15_661 0.58 -2.4 683,769 - HP15_661 0.63 -0.2 683,840 - HP15_661 0.72 +2.6 683,845 - HP15_661 0.73 +2.1 683,903 + HP15_661 0.80 -0.7 683,908 + HP15_661 0.81 +0.3 683,911 - HP15_661 0.81 +0.0 683,950 + HP15_661 0.86 +0.1 684,024 + -0.6 684,032 - -0.4 684,122 - HP15_662 0.11 -0.5 684,187 - HP15_662 0.22 +0.4 684,194 + HP15_662 0.23 +0.3 684,196 + HP15_662 0.23 +1.6 684,196 + HP15_662 0.23 -0.2 684,406 - HP15_662 0.60 +2.2 684,474 + HP15_662 0.72 +1.5 684,488 + HP15_662 0.74 +3.3 684,495 - HP15_662 0.75 +1.5 684,567 + HP15_662 0.88 +0.3 684,635 - +1.1 684,682 + +0.9 684,716 + -0.4 684,721 + HP15_663 0.10 +0.6 684,721 + HP15_663 0.10 -0.2 684,721 + HP15_663 0.10 +0.2 684,729 - HP15_663 0.11 -1.1 684,746 + HP15_663 0.13 +0.1 684,773 + HP15_663 0.16 +1.2 684,901 - HP15_663 0.30 +1.1 684,968 + HP15_663 0.37 +0.0 684,970 + HP15_663 0.37 -0.1 684,976 - HP15_663 0.38 +0.1 684,976 - HP15_663 0.38 +0.7 684,976 - HP15_663 0.38 -0.5 685,009 + HP15_663 0.41 +1.6 685,030 - HP15_663 0.44 -0.0 685,059 + HP15_663 0.47 +0.9 685,093 + HP15_663 0.50 -0.0 685,131 + HP15_663 0.55 +0.5 685,139 - HP15_663 0.55 +3.3 685,209 + HP15_663 0.63 +2.2 685,275 - HP15_663 0.70 -0.3 685,275 - HP15_663 0.70 +0.6 685,437 + HP15_663 0.88 -0.8 685,452 + HP15_663 0.89 -0.5 685,460 - -0.8 685,462 + +0.5 685,565 - -0.5 685,615 + HP15_664 0.19 +1.6 685,689 - HP15_664 0.41 +0.7 685,690 + HP15_664 0.42 +0.2 685,735 - HP15_664 0.55 +1.0 685,777 - HP15_664 0.67 +1.9 685,889 - +2.2 686,031 + HP15_665 0.12 +1.1 686,103 - HP15_665 0.21 +0.1 686,174 - HP15_665 0.30 -0.2 686,397 + HP15_665 0.58 +0.3 686,428 + HP15_665 0.62 +0.3 686,428 + HP15_665 0.62 +0.1 686,428 + HP15_665 0.62 -0.4 686,428 + HP15_665 0.62 -1.4 686,428 + HP15_665 0.62 +1.1 686,436 - HP15_665 0.63 -0.4 686,436 - HP15_665 0.63 +0.2 686,436 - HP15_665 0.63 -1.9 686,436 - HP15_665 0.63 +0.5 686,436 - HP15_665 0.63 +4.2 686,456 + HP15_665 0.66 -0.5 686,456 + HP15_665 0.66 +2.5 686,459 - HP15_665 0.66 +0.2 686,469 + HP15_665 0.67 +2.2 686,492 + HP15_665 0.70 -0.3
Or see this region's nucleotide sequence