Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_658 and HP15_659 overlap by 4 nucleotides HP15_659 and HP15_660 are separated by 1 nucleotides HP15_660 and HP15_661 are separated by 325 nucleotides
HP15_658: HP15_658 - secreted protein-putative xanthan lyase, at 679,216 to 681,789
_658
HP15_659: HP15_659 - hypothetical protein, at 681,786 to 682,568
_659
HP15_660: HP15_660 - hypothetical protein, at 682,570 to 682,953
_660
HP15_661: HP15_661 - hypothetical protein, at 683,279 to 684,058
_661
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1
2
3 at 680.873 kb on - strand, within HP15_658 at 680.947 kb on - strand, within HP15_658 at 681.011 kb on - strand, within HP15_658 at 681.025 kb on - strand, within HP15_658 at 681.081 kb on + strand, within HP15_658 at 681.160 kb on + strand, within HP15_658 at 681.168 kb on - strand, within HP15_658 at 681.217 kb on + strand, within HP15_658 at 681.217 kb on + strand, within HP15_658 at 681.225 kb on - strand, within HP15_658 at 681.256 kb on + strand, within HP15_658 at 681.304 kb on + strand, within HP15_658 at 681.304 kb on + strand, within HP15_658 at 681.312 kb on - strand, within HP15_658 at 681.312 kb on - strand, within HP15_658 at 681.321 kb on + strand, within HP15_658 at 681.321 kb on + strand, within HP15_658 at 681.321 kb on + strand, within HP15_658 at 681.365 kb on + strand, within HP15_658 at 681.381 kb on - strand, within HP15_658 at 681.396 kb on - strand, within HP15_658 at 681.414 kb on - strand, within HP15_658 at 681.511 kb on - strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.513 kb on + strand, within HP15_658 at 681.521 kb on - strand, within HP15_658 at 681.521 kb on - strand, within HP15_658 at 681.521 kb on - strand, within HP15_658 at 681.574 kb on + strand at 681.605 kb on + strand at 681.646 kb on + strand at 681.646 kb on + strand at 681.705 kb on - strand at 681.736 kb on + strand at 681.771 kb on - strand at 681.771 kb on - strand at 681.962 kb on + strand, within HP15_659 at 681.977 kb on + strand, within HP15_659 at 682.165 kb on + strand, within HP15_659 at 682.175 kb on + strand, within HP15_659 at 682.324 kb on - strand, within HP15_659 at 682.325 kb on - strand, within HP15_659 at 682.338 kb on + strand, within HP15_659 at 682.359 kb on - strand, within HP15_659 at 682.417 kb on + strand, within HP15_659 at 682.514 kb on + strand at 682.554 kb on + strand at 682.573 kb on + strand at 682.573 kb on + strand at 682.581 kb on - strand at 682.581 kb on - strand at 682.639 kb on + strand, within HP15_660 at 682.640 kb on + strand, within HP15_660 at 682.644 kb on + strand, within HP15_660 at 682.831 kb on + strand, within HP15_660 at 682.834 kb on - strand, within HP15_660 at 682.875 kb on + strand, within HP15_660 at 682.910 kb on + strand, within HP15_660 at 683.149 kb on + strand at 683.155 kb on + strand at 683.228 kb on + strand at 683.285 kb on - strand at 683.285 kb on - strand at 683.321 kb on + strand at 683.345 kb on - strand at 683.371 kb on + strand, within HP15_661 at 683.438 kb on + strand, within HP15_661 at 683.456 kb on - strand, within HP15_661
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 680,873 - HP15_658 0.64 -0.3 680,947 - HP15_658 0.67 +0.9 681,011 - HP15_658 0.70 +0.6 681,025 - HP15_658 0.70 +1.0 681,081 + HP15_658 0.72 +0.6 681,160 + HP15_658 0.76 +0.8 681,168 - HP15_658 0.76 +1.2 681,217 + HP15_658 0.78 -0.4 681,217 + HP15_658 0.78 +0.2 681,225 - HP15_658 0.78 +0.7 681,256 + HP15_658 0.79 +0.1 681,304 + HP15_658 0.81 -0.7 681,304 + HP15_658 0.81 -0.1 681,312 - HP15_658 0.81 +1.4 681,312 - HP15_658 0.81 -0.4 681,321 + HP15_658 0.82 +2.1 681,321 + HP15_658 0.82 +0.1 681,321 + HP15_658 0.82 +0.2 681,365 + HP15_658 0.83 +3.0 681,381 - HP15_658 0.84 +0.5 681,396 - HP15_658 0.85 +1.6 681,414 - HP15_658 0.85 +1.6 681,511 - HP15_658 0.89 +0.9 681,513 + HP15_658 0.89 -0.4 681,513 + HP15_658 0.89 +0.3 681,513 + HP15_658 0.89 +1.8 681,513 + HP15_658 0.89 +1.1 681,521 - HP15_658 0.90 +1.2 681,521 - HP15_658 0.90 +1.4 681,521 - HP15_658 0.90 -0.4 681,574 + -1.6 681,605 + +0.1 681,646 + +0.1 681,646 + +1.8 681,705 - -0.5 681,736 + +0.8 681,771 - +0.8 681,771 - +2.0 681,962 + HP15_659 0.22 -0.1 681,977 + HP15_659 0.24 -1.1 682,165 + HP15_659 0.48 +0.4 682,175 + HP15_659 0.50 -0.4 682,324 - HP15_659 0.69 +0.6 682,325 - HP15_659 0.69 -0.0 682,338 + HP15_659 0.70 +0.2 682,359 - HP15_659 0.73 +1.0 682,417 + HP15_659 0.81 -0.4 682,514 + +0.6 682,554 + +1.2 682,573 + -0.7 682,573 + -1.3 682,581 - +3.2 682,581 - +0.0 682,639 + HP15_660 0.18 +1.6 682,640 + HP15_660 0.18 +0.6 682,644 + HP15_660 0.19 -0.5 682,831 + HP15_660 0.68 -0.8 682,834 - HP15_660 0.69 -1.4 682,875 + HP15_660 0.79 -0.3 682,910 + HP15_660 0.89 -1.1 683,149 + +0.2 683,155 + +0.1 683,228 + +2.1 683,285 - -0.6 683,285 - +0.9 683,321 + -0.2 683,345 - +1.9 683,371 + HP15_661 0.12 +0.2 683,438 + HP15_661 0.20 -1.4 683,456 - HP15_661 0.23 +1.0
Or see this region's nucleotide sequence