Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_444 and HP15_445 are separated by 131 nucleotides HP15_445 and HP15_446 are separated by 23 nucleotides HP15_446 and HP15_447 overlap by 4 nucleotides
HP15_444: HP15_444 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 447,850 to 449,271
_444
HP15_445: HP15_445 - beta 1,4 glucosyltransferase, at 449,403 to 450,197
_445
HP15_446: HP15_446 - glycosyltransferase, at 450,221 to 451,276
_446
HP15_447: HP15_447 - glycosyltransferase, at 451,273 to 452,388
_447
Position (kb) 450
451
452 Strain fitness (log2 ratio) -1
0
1
2 at 449.436 kb on - strand at 449.526 kb on - strand, within HP15_445 at 449.583 kb on + strand, within HP15_445 at 449.584 kb on - strand, within HP15_445 at 449.680 kb on - strand, within HP15_445 at 449.870 kb on + strand, within HP15_445 at 449.870 kb on + strand, within HP15_445 at 449.878 kb on - strand, within HP15_445 at 449.878 kb on - strand, within HP15_445 at 449.883 kb on - strand, within HP15_445 at 449.915 kb on - strand, within HP15_445 at 450.154 kb on - strand at 450.156 kb on + strand at 450.204 kb on + strand at 450.204 kb on + strand at 450.334 kb on + strand, within HP15_446 at 450.334 kb on + strand, within HP15_446 at 450.342 kb on - strand, within HP15_446 at 450.352 kb on - strand, within HP15_446 at 450.352 kb on - strand, within HP15_446 at 450.352 kb on - strand, within HP15_446 at 450.391 kb on - strand, within HP15_446 at 450.443 kb on + strand, within HP15_446 at 450.465 kb on - strand, within HP15_446 at 450.485 kb on + strand, within HP15_446 at 450.516 kb on + strand, within HP15_446 at 450.542 kb on + strand, within HP15_446 at 450.550 kb on - strand, within HP15_446 at 450.553 kb on - strand, within HP15_446 at 450.611 kb on + strand, within HP15_446 at 450.701 kb on - strand, within HP15_446 at 450.702 kb on + strand, within HP15_446 at 450.707 kb on - strand, within HP15_446 at 450.707 kb on - strand, within HP15_446 at 450.763 kb on + strand, within HP15_446 at 450.783 kb on - strand, within HP15_446 at 450.823 kb on - strand, within HP15_446 at 450.918 kb on - strand, within HP15_446 at 450.937 kb on - strand, within HP15_446 at 450.990 kb on + strand, within HP15_446 at 451.087 kb on - strand, within HP15_446 at 451.236 kb on + strand at 451.294 kb on + strand at 451.424 kb on - strand, within HP15_447 at 451.558 kb on - strand, within HP15_447 at 451.650 kb on - strand, within HP15_447 at 451.673 kb on + strand, within HP15_447 at 451.695 kb on + strand, within HP15_447 at 451.710 kb on + strand, within HP15_447 at 451.718 kb on - strand, within HP15_447 at 451.894 kb on + strand, within HP15_447 at 451.998 kb on - strand, within HP15_447 at 452.020 kb on + strand, within HP15_447 at 452.139 kb on - strand, within HP15_447
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 449,436 - +0.3 449,526 - HP15_445 0.15 +0.9 449,583 + HP15_445 0.23 -0.6 449,584 - HP15_445 0.23 +0.3 449,680 - HP15_445 0.35 +0.3 449,870 + HP15_445 0.59 +0.1 449,870 + HP15_445 0.59 -0.2 449,878 - HP15_445 0.60 -1.0 449,878 - HP15_445 0.60 -0.7 449,883 - HP15_445 0.60 +1.4 449,915 - HP15_445 0.64 -1.7 450,154 - -0.1 450,156 + +1.0 450,204 + -1.1 450,204 + +0.1 450,334 + HP15_446 0.11 +0.9 450,334 + HP15_446 0.11 +0.6 450,342 - HP15_446 0.11 +0.2 450,352 - HP15_446 0.12 -0.9 450,352 - HP15_446 0.12 +0.1 450,352 - HP15_446 0.12 -0.5 450,391 - HP15_446 0.16 +2.0 450,443 + HP15_446 0.21 -1.4 450,465 - HP15_446 0.23 -0.3 450,485 + HP15_446 0.25 +0.1 450,516 + HP15_446 0.28 -0.8 450,542 + HP15_446 0.30 +1.5 450,550 - HP15_446 0.31 +0.4 450,553 - HP15_446 0.31 +0.3 450,611 + HP15_446 0.37 +0.3 450,701 - HP15_446 0.45 -0.3 450,702 + HP15_446 0.46 +0.6 450,707 - HP15_446 0.46 +0.7 450,707 - HP15_446 0.46 +0.4 450,763 + HP15_446 0.51 +0.3 450,783 - HP15_446 0.53 -0.4 450,823 - HP15_446 0.57 +0.4 450,918 - HP15_446 0.66 +0.3 450,937 - HP15_446 0.68 +0.6 450,990 + HP15_446 0.73 +1.6 451,087 - HP15_446 0.82 -0.0 451,236 + +0.8 451,294 + +0.5 451,424 - HP15_447 0.14 -1.3 451,558 - HP15_447 0.26 -0.9 451,650 - HP15_447 0.34 -0.4 451,673 + HP15_447 0.36 -0.6 451,695 + HP15_447 0.38 +0.3 451,710 + HP15_447 0.39 +0.8 451,718 - HP15_447 0.40 +1.2 451,894 + HP15_447 0.56 +0.2 451,998 - HP15_447 0.65 -0.2 452,020 + HP15_447 0.67 +0.6 452,139 - HP15_447 0.78 +0.1
Or see this region's nucleotide sequence