Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g161

Experiment: m.b. Tetracycline 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g160 and HP15_p187g161 are separated by 507 nucleotidesHP15_p187g161 and HP15_p187g162 are separated by 1 nucleotidesHP15_p187g162 and HP15_p187g163 are separated by 326 nucleotides HP15_p187g160: HP15_p187g160 - conserved hypothetical protein, secreted, at 162,906 to 163,457 _p187g160 HP15_p187g161: HP15_p187g161 - conserved hypothetical protein, at 163,965 to 164,936 _p187g161 HP15_p187g162: HP15_p187g162 - hypothetical protein, at 164,938 to 165,183 _p187g162 HP15_p187g163: HP15_p187g163 - phage integrase family protein, at 165,510 to 166,814 _p187g163 Position (kb) 163 164 165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 162.965 kb on - strand, within HP15_p187g160at 162.981 kb on + strand, within HP15_p187g160at 162.989 kb on - strand, within HP15_p187g160at 163.016 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.023 kb on + strand, within HP15_p187g160at 163.028 kb on + strand, within HP15_p187g160at 163.031 kb on - strand, within HP15_p187g160at 163.031 kb on - strand, within HP15_p187g160at 163.031 kb on - strand, within HP15_p187g160at 163.062 kb on + strand, within HP15_p187g160at 163.100 kb on - strand, within HP15_p187g160at 163.104 kb on + strand, within HP15_p187g160at 163.112 kb on - strand, within HP15_p187g160at 163.140 kb on + strand, within HP15_p187g160at 163.148 kb on - strand, within HP15_p187g160at 163.238 kb on + strand, within HP15_p187g160at 163.248 kb on - strand, within HP15_p187g160at 163.300 kb on + strand, within HP15_p187g160at 163.335 kb on + strand, within HP15_p187g160at 163.340 kb on + strand, within HP15_p187g160at 163.343 kb on - strand, within HP15_p187g160at 163.343 kb on - strand, within HP15_p187g160at 163.343 kb on - strand, within HP15_p187g160at 163.344 kb on + strand, within HP15_p187g160at 163.345 kb on + strand, within HP15_p187g160at 163.353 kb on - strand, within HP15_p187g160at 163.357 kb on + strand, within HP15_p187g160at 163.377 kb on + strand, within HP15_p187g160at 163.378 kb on - strand, within HP15_p187g160at 163.407 kb on + strandat 163.486 kb on + strandat 163.487 kb on - strandat 163.494 kb on - strandat 163.560 kb on + strandat 163.560 kb on + strandat 163.568 kb on - strandat 163.628 kb on + strandat 163.715 kb on - strandat 163.738 kb on + strandat 163.776 kb on + strandat 163.784 kb on - strandat 163.789 kb on - strandat 163.806 kb on - strandat 163.846 kb on - strandat 163.868 kb on - strandat 163.889 kb on + strandat 163.889 kb on + strandat 163.896 kb on + strandat 163.917 kb on - strandat 163.917 kb on - strandat 163.940 kb on + strandat 163.948 kb on - strandat 163.948 kb on - strandat 163.964 kb on + strandat 163.969 kb on + strandat 163.972 kb on - strandat 163.986 kb on - strandat 164.002 kb on + strandat 164.161 kb on + strand, within HP15_p187g161at 164.169 kb on - strand, within HP15_p187g161at 164.169 kb on - strand, within HP15_p187g161at 164.220 kb on + strand, within HP15_p187g161at 164.250 kb on - strand, within HP15_p187g161at 164.338 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.344 kb on - strand, within HP15_p187g161at 164.366 kb on - strand, within HP15_p187g161at 164.370 kb on - strand, within HP15_p187g161at 164.372 kb on + strand, within HP15_p187g161at 164.507 kb on + strand, within HP15_p187g161at 164.508 kb on + strand, within HP15_p187g161at 164.518 kb on + strand, within HP15_p187g161at 164.518 kb on - strand, within HP15_p187g161at 164.526 kb on - strand, within HP15_p187g161at 164.541 kb on - strand, within HP15_p187g161at 164.541 kb on - strand, within HP15_p187g161at 164.541 kb on - strand, within HP15_p187g161at 164.543 kb on - strand, within HP15_p187g161at 164.558 kb on - strand, within HP15_p187g161at 164.560 kb on + strand, within HP15_p187g161at 164.581 kb on + strand, within HP15_p187g161at 164.639 kb on + strand, within HP15_p187g161at 164.639 kb on + strand, within HP15_p187g161at 164.642 kb on - strand, within HP15_p187g161at 164.647 kb on - strand, within HP15_p187g161at 164.647 kb on - strand, within HP15_p187g161at 164.677 kb on + strand, within HP15_p187g161at 164.677 kb on + strand, within HP15_p187g161at 164.677 kb on + strand, within HP15_p187g161at 164.677 kb on + strand, within HP15_p187g161at 164.685 kb on - strand, within HP15_p187g161at 164.685 kb on - strand, within HP15_p187g161at 164.685 kb on - strand, within HP15_p187g161at 164.685 kb on - strand, within HP15_p187g161at 164.685 kb on - strand, within HP15_p187g161at 164.685 kb on - strand, within HP15_p187g161at 164.685 kb on - strand, within HP15_p187g161at 164.695 kb on + strand, within HP15_p187g161at 164.745 kb on - strand, within HP15_p187g161at 164.765 kb on + strand, within HP15_p187g161at 164.847 kb on + strandat 164.847 kb on + strandat 164.859 kb on - strandat 164.859 kb on - strandat 164.860 kb on + strandat 164.867 kb on - strandat 164.917 kb on + strandat 164.988 kb on + strand, within HP15_p187g162at 164.988 kb on + strand, within HP15_p187g162at 164.996 kb on - strand, within HP15_p187g162at 165.048 kb on + strand, within HP15_p187g162at 165.050 kb on + strand, within HP15_p187g162at 165.058 kb on - strand, within HP15_p187g162at 165.077 kb on + strand, within HP15_p187g162at 165.085 kb on - strand, within HP15_p187g162at 165.120 kb on + strand, within HP15_p187g162at 165.453 kb on - strandat 165.490 kb on - strandat 165.500 kb on - strandat 165.557 kb on - strandat 165.567 kb on - strandat 165.606 kb on + strandat 165.614 kb on - strandat 165.650 kb on - strand, within HP15_p187g163at 165.650 kb on - strand, within HP15_p187g163at 165.651 kb on - strand, within HP15_p187g163at 165.688 kb on + strand, within HP15_p187g163at 165.813 kb on + strand, within HP15_p187g163at 165.838 kb on - strand, within HP15_p187g163at 165.904 kb on - strand, within HP15_p187g163at 165.924 kb on + strand, within HP15_p187g163at 165.932 kb on - strand, within HP15_p187g163

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml
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162,965 - HP15_p187g160 0.11 -1.4
162,981 + HP15_p187g160 0.14 -1.4
162,989 - HP15_p187g160 0.15 -0.8
163,016 + HP15_p187g160 0.20 -0.5
163,023 + HP15_p187g160 0.21 +0.2
163,023 + HP15_p187g160 0.21 +0.0
163,023 + HP15_p187g160 0.21 -0.4
163,023 + HP15_p187g160 0.21 +0.1
163,028 + HP15_p187g160 0.22 +0.3
163,031 - HP15_p187g160 0.23 -0.9
163,031 - HP15_p187g160 0.23 -0.4
163,031 - HP15_p187g160 0.23 +0.3
163,062 + HP15_p187g160 0.28 +0.3
163,100 - HP15_p187g160 0.35 -0.0
163,104 + HP15_p187g160 0.36 +0.1
163,112 - HP15_p187g160 0.37 +0.1
163,140 + HP15_p187g160 0.42 +0.1
163,148 - HP15_p187g160 0.44 +0.8
163,238 + HP15_p187g160 0.60 +0.7
163,248 - HP15_p187g160 0.62 +0.5
163,300 + HP15_p187g160 0.71 +0.3
163,335 + HP15_p187g160 0.78 +0.8
163,340 + HP15_p187g160 0.79 +0.3
163,343 - HP15_p187g160 0.79 +0.7
163,343 - HP15_p187g160 0.79 -0.6
163,343 - HP15_p187g160 0.79 +0.3
163,344 + HP15_p187g160 0.79 -1.4
163,345 + HP15_p187g160 0.80 +0.1
163,353 - HP15_p187g160 0.81 +0.3
163,357 + HP15_p187g160 0.82 -0.0
163,377 + HP15_p187g160 0.85 +0.2
163,378 - HP15_p187g160 0.86 +0.0
163,407 + -1.7
163,486 + -1.4
163,487 - -1.2
163,494 - +0.1
163,560 + +0.7
163,560 + +0.6
163,568 - +0.9
163,628 + +0.7
163,715 - +1.0
163,738 + -1.4
163,776 + -0.3
163,784 - -1.8
163,789 - -1.4
163,806 - -1.3
163,846 - -0.9
163,868 - -0.6
163,889 + -0.7
163,889 + +0.5
163,896 + -2.9
163,917 - -1.7
163,917 - +0.2
163,940 + +1.2
163,948 - +0.2
163,948 - -1.3
163,964 + +0.7
163,969 + +0.2
163,972 - -1.0
163,986 - -2.0
164,002 + +1.1
164,161 + HP15_p187g161 0.20 +0.1
164,169 - HP15_p187g161 0.21 -0.2
164,169 - HP15_p187g161 0.21 +0.9
164,220 + HP15_p187g161 0.26 +1.8
164,250 - HP15_p187g161 0.29 -0.1
164,338 - HP15_p187g161 0.38 +1.1
164,344 - HP15_p187g161 0.39 -0.4
164,344 - HP15_p187g161 0.39 -4.0
164,344 - HP15_p187g161 0.39 -0.7
164,344 - HP15_p187g161 0.39 +0.4
164,344 - HP15_p187g161 0.39 +0.5
164,366 - HP15_p187g161 0.41 +1.0
164,370 - HP15_p187g161 0.42 +1.0
164,372 + HP15_p187g161 0.42 +0.3
164,507 + HP15_p187g161 0.56 -0.9
164,508 + HP15_p187g161 0.56 +0.5
164,518 + HP15_p187g161 0.57 -0.4
164,518 - HP15_p187g161 0.57 +2.9
164,526 - HP15_p187g161 0.58 -0.1
164,541 - HP15_p187g161 0.59 +0.6
164,541 - HP15_p187g161 0.59 +0.5
164,541 - HP15_p187g161 0.59 -0.4
164,543 - HP15_p187g161 0.59 +0.4
164,558 - HP15_p187g161 0.61 -0.1
164,560 + HP15_p187g161 0.61 +1.0
164,581 + HP15_p187g161 0.63 +0.7
164,639 + HP15_p187g161 0.69 -0.2
164,639 + HP15_p187g161 0.69 +0.3
164,642 - HP15_p187g161 0.70 -2.8
164,647 - HP15_p187g161 0.70 -1.2
164,647 - HP15_p187g161 0.70 +2.3
164,677 + HP15_p187g161 0.73 +0.9
164,677 + HP15_p187g161 0.73 -2.0
164,677 + HP15_p187g161 0.73 +0.7
164,677 + HP15_p187g161 0.73 +0.7
164,685 - HP15_p187g161 0.74 -0.1
164,685 - HP15_p187g161 0.74 +0.1
164,685 - HP15_p187g161 0.74 +0.5
164,685 - HP15_p187g161 0.74 +0.0
164,685 - HP15_p187g161 0.74 -0.4
164,685 - HP15_p187g161 0.74 +0.4
164,685 - HP15_p187g161 0.74 -4.2
164,695 + HP15_p187g161 0.75 -0.3
164,745 - HP15_p187g161 0.80 -0.5
164,765 + HP15_p187g161 0.82 +0.4
164,847 + +0.8
164,847 + +0.1
164,859 - +1.4
164,859 - -0.7
164,860 + -0.9
164,867 - -0.1
164,917 + -0.4
164,988 + HP15_p187g162 0.20 -2.1
164,988 + HP15_p187g162 0.20 +2.6
164,996 - HP15_p187g162 0.24 +0.8
165,048 + HP15_p187g162 0.45 -0.0
165,050 + HP15_p187g162 0.46 -0.6
165,058 - HP15_p187g162 0.49 +0.5
165,077 + HP15_p187g162 0.57 +0.5
165,085 - HP15_p187g162 0.60 +0.7
165,120 + HP15_p187g162 0.74 -0.7
165,453 - +0.3
165,490 - +1.3
165,500 - +1.4
165,557 - -0.0
165,567 - -0.1
165,606 + -0.9
165,614 - +0.5
165,650 - HP15_p187g163 0.11 +1.2
165,650 - HP15_p187g163 0.11 -0.2
165,651 - HP15_p187g163 0.11 -0.3
165,688 + HP15_p187g163 0.14 +0.1
165,813 + HP15_p187g163 0.23 +0.5
165,838 - HP15_p187g163 0.25 +0.5
165,904 - HP15_p187g163 0.30 -2.2
165,924 + HP15_p187g163 0.32 +0.3
165,932 - HP15_p187g163 0.32 -0.5

Or see this region's nucleotide sequence