Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g67 and HP15_p187g68 are separated by 56 nucleotides HP15_p187g68 and HP15_p187g69 are separated by 83 nucleotides
HP15_p187g67: HP15_p187g67 - glycosyl transferase group 1 family protein, at 59,769 to 60,950
_p187g67
HP15_p187g68: HP15_p187g68 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 61,007 to 62,269
_p187g68
HP15_p187g69: HP15_p187g69 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing, at 62,353 to 64,194
_p187g69
Position (kb) 61
62
63 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 60.015 kb on - strand, within HP15_p187g67 at 60.020 kb on - strand, within HP15_p187g67 at 60.027 kb on + strand, within HP15_p187g67 at 60.105 kb on + strand, within HP15_p187g67 at 60.105 kb on + strand, within HP15_p187g67 at 60.113 kb on - strand, within HP15_p187g67 at 60.113 kb on - strand, within HP15_p187g67 at 60.153 kb on + strand, within HP15_p187g67 at 60.161 kb on - strand, within HP15_p187g67 at 60.161 kb on - strand, within HP15_p187g67 at 60.207 kb on + strand, within HP15_p187g67 at 60.207 kb on + strand, within HP15_p187g67 at 60.262 kb on + strand, within HP15_p187g67 at 60.262 kb on + strand, within HP15_p187g67 at 60.269 kb on - strand, within HP15_p187g67 at 60.293 kb on - strand, within HP15_p187g67 at 60.302 kb on + strand, within HP15_p187g67 at 60.302 kb on + strand, within HP15_p187g67 at 60.302 kb on + strand, within HP15_p187g67 at 60.310 kb on - strand, within HP15_p187g67 at 60.311 kb on - strand, within HP15_p187g67 at 60.333 kb on + strand, within HP15_p187g67 at 60.341 kb on - strand, within HP15_p187g67 at 60.341 kb on - strand, within HP15_p187g67 at 60.369 kb on + strand, within HP15_p187g67 at 60.401 kb on + strand, within HP15_p187g67 at 60.424 kb on - strand, within HP15_p187g67 at 60.425 kb on + strand, within HP15_p187g67 at 60.425 kb on - strand, within HP15_p187g67 at 60.449 kb on + strand, within HP15_p187g67 at 60.457 kb on - strand, within HP15_p187g67 at 60.457 kb on - strand, within HP15_p187g67 at 60.457 kb on - strand, within HP15_p187g67 at 60.471 kb on - strand, within HP15_p187g67 at 60.471 kb on - strand, within HP15_p187g67 at 60.492 kb on - strand, within HP15_p187g67 at 60.540 kb on - strand, within HP15_p187g67 at 60.550 kb on - strand, within HP15_p187g67 at 60.566 kb on - strand, within HP15_p187g67 at 60.568 kb on + strand, within HP15_p187g67 at 60.620 kb on + strand, within HP15_p187g67 at 60.635 kb on + strand, within HP15_p187g67 at 60.635 kb on + strand, within HP15_p187g67 at 60.655 kb on + strand, within HP15_p187g67 at 60.685 kb on + strand, within HP15_p187g67 at 60.715 kb on - strand, within HP15_p187g67 at 60.715 kb on - strand, within HP15_p187g67 at 60.723 kb on + strand, within HP15_p187g67 at 60.729 kb on - strand, within HP15_p187g67 at 60.746 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.780 kb on + strand, within HP15_p187g67 at 60.788 kb on - strand, within HP15_p187g67 at 60.788 kb on - strand, within HP15_p187g67 at 60.788 kb on - strand, within HP15_p187g67 at 60.806 kb on - strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.817 kb on + strand, within HP15_p187g67 at 60.824 kb on - strand, within HP15_p187g67 at 60.824 kb on - strand, within HP15_p187g67 at 60.825 kb on - strand, within HP15_p187g67 at 60.866 kb on - strand at 60.887 kb on + strand at 60.907 kb on - strand at 60.998 kb on - strand at 61.014 kb on + strand at 61.033 kb on + strand at 61.048 kb on + strand at 61.072 kb on + strand at 61.097 kb on - strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.128 kb on - strand at 61.128 kb on - strand at 61.128 kb on - strand at 61.145 kb on + strand, within HP15_p187g68 at 61.155 kb on + strand, within HP15_p187g68 at 61.155 kb on + strand, within HP15_p187g68 at 61.155 kb on + strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.163 kb on - strand, within HP15_p187g68 at 61.168 kb on + strand, within HP15_p187g68 at 61.184 kb on - strand, within HP15_p187g68 at 61.269 kb on - strand, within HP15_p187g68 at 61.325 kb on - strand, within HP15_p187g68 at 61.335 kb on - strand, within HP15_p187g68 at 61.358 kb on - strand, within HP15_p187g68 at 61.363 kb on - strand, within HP15_p187g68 at 61.402 kb on - strand, within HP15_p187g68 at 61.429 kb on + strand, within HP15_p187g68 at 61.429 kb on + strand, within HP15_p187g68 at 61.429 kb on + strand, within HP15_p187g68 at 61.429 kb on - strand, within HP15_p187g68 at 61.437 kb on - strand, within HP15_p187g68 at 61.439 kb on + strand, within HP15_p187g68 at 61.441 kb on + strand, within HP15_p187g68 at 61.441 kb on + strand, within HP15_p187g68 at 61.447 kb on - strand, within HP15_p187g68 at 61.449 kb on - strand, within HP15_p187g68 at 61.503 kb on - strand, within HP15_p187g68 at 61.545 kb on - strand, within HP15_p187g68 at 61.564 kb on - strand, within HP15_p187g68 at 61.585 kb on - strand, within HP15_p187g68 at 61.617 kb on - strand, within HP15_p187g68 at 61.637 kb on + strand, within HP15_p187g68 at 61.689 kb on + strand, within HP15_p187g68 at 61.689 kb on + strand, within HP15_p187g68 at 61.757 kb on - strand, within HP15_p187g68 at 61.792 kb on - strand, within HP15_p187g68 at 61.808 kb on + strand, within HP15_p187g68 at 61.828 kb on + strand, within HP15_p187g68 at 61.858 kb on + strand, within HP15_p187g68 at 61.881 kb on + strand, within HP15_p187g68 at 61.906 kb on + strand, within HP15_p187g68 at 62.016 kb on + strand, within HP15_p187g68 at 62.024 kb on + strand, within HP15_p187g68 at 62.024 kb on + strand, within HP15_p187g68 at 62.024 kb on + strand, within HP15_p187g68 at 62.024 kb on - strand, within HP15_p187g68 at 62.032 kb on - strand, within HP15_p187g68 at 62.032 kb on - strand, within HP15_p187g68 at 62.037 kb on + strand, within HP15_p187g68 at 62.045 kb on - strand, within HP15_p187g68 at 62.055 kb on - strand, within HP15_p187g68 at 62.091 kb on + strand, within HP15_p187g68 at 62.091 kb on + strand, within HP15_p187g68 at 62.137 kb on + strand, within HP15_p187g68 at 62.153 kb on + strand at 62.193 kb on - strand at 62.193 kb on - strand at 62.193 kb on - strand at 62.263 kb on - strand at 62.270 kb on + strand at 62.301 kb on - strand at 62.311 kb on + strand at 62.355 kb on - strand at 62.387 kb on + strand at 62.428 kb on - strand at 62.430 kb on - strand at 62.478 kb on - strand at 62.478 kb on - strand at 62.478 kb on - strand at 62.522 kb on - strand at 62.524 kb on + strand at 62.547 kb on + strand, within HP15_p187g69 at 62.552 kb on + strand, within HP15_p187g69 at 62.555 kb on - strand, within HP15_p187g69 at 62.555 kb on - strand, within HP15_p187g69 at 62.578 kb on + strand, within HP15_p187g69 at 62.578 kb on - strand, within HP15_p187g69 at 62.584 kb on - strand, within HP15_p187g69 at 62.607 kb on + strand, within HP15_p187g69 at 62.615 kb on - strand, within HP15_p187g69 at 62.687 kb on - strand, within HP15_p187g69 at 62.687 kb on - strand, within HP15_p187g69 at 62.724 kb on + strand, within HP15_p187g69 at 62.724 kb on - strand, within HP15_p187g69 at 62.734 kb on + strand, within HP15_p187g69 at 62.795 kb on - strand, within HP15_p187g69 at 62.795 kb on - strand, within HP15_p187g69 at 62.825 kb on - strand, within HP15_p187g69 at 62.828 kb on + strand, within HP15_p187g69 at 62.862 kb on - strand, within HP15_p187g69 at 62.867 kb on + strand, within HP15_p187g69 at 62.867 kb on + strand, within HP15_p187g69 at 62.867 kb on + strand, within HP15_p187g69 at 62.867 kb on + strand, within HP15_p187g69 at 62.875 kb on - strand, within HP15_p187g69 at 62.875 kb on - strand, within HP15_p187g69 at 62.893 kb on + strand, within HP15_p187g69 at 62.942 kb on + strand, within HP15_p187g69 at 63.112 kb on - strand, within HP15_p187g69 at 63.161 kb on - strand, within HP15_p187g69 at 63.180 kb on + strand, within HP15_p187g69 at 63.185 kb on + strand, within HP15_p187g69 at 63.188 kb on - strand, within HP15_p187g69 at 63.195 kb on - strand, within HP15_p187g69 at 63.198 kb on - strand, within HP15_p187g69 at 63.228 kb on - strand, within HP15_p187g69
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 60,015 - HP15_p187g67 0.21 -1.2 60,020 - HP15_p187g67 0.21 -1.3 60,027 + HP15_p187g67 0.22 +0.1 60,105 + HP15_p187g67 0.28 +0.0 60,105 + HP15_p187g67 0.28 +0.8 60,113 - HP15_p187g67 0.29 -0.6 60,113 - HP15_p187g67 0.29 +1.1 60,153 + HP15_p187g67 0.32 +0.8 60,161 - HP15_p187g67 0.33 -0.8 60,161 - HP15_p187g67 0.33 +0.3 60,207 + HP15_p187g67 0.37 +1.8 60,207 + HP15_p187g67 0.37 +0.8 60,262 + HP15_p187g67 0.42 -0.1 60,262 + HP15_p187g67 0.42 +2.0 60,269 - HP15_p187g67 0.42 +1.5 60,293 - HP15_p187g67 0.44 +1.2 60,302 + HP15_p187g67 0.45 +1.2 60,302 + HP15_p187g67 0.45 -0.4 60,302 + HP15_p187g67 0.45 +0.6 60,310 - HP15_p187g67 0.46 +1.1 60,311 - HP15_p187g67 0.46 +0.6 60,333 + HP15_p187g67 0.48 +0.6 60,341 - HP15_p187g67 0.48 +0.7 60,341 - HP15_p187g67 0.48 -4.0 60,369 + HP15_p187g67 0.51 +2.2 60,401 + HP15_p187g67 0.53 +1.3 60,424 - HP15_p187g67 0.55 -0.8 60,425 + HP15_p187g67 0.55 +0.7 60,425 - HP15_p187g67 0.55 +0.5 60,449 + HP15_p187g67 0.58 +3.3 60,457 - HP15_p187g67 0.58 +1.0 60,457 - HP15_p187g67 0.58 -1.0 60,457 - HP15_p187g67 0.58 +1.9 60,471 - HP15_p187g67 0.59 -0.7 60,471 - HP15_p187g67 0.59 -0.4 60,492 - HP15_p187g67 0.61 -0.4 60,540 - HP15_p187g67 0.65 +1.2 60,550 - HP15_p187g67 0.66 +0.9 60,566 - HP15_p187g67 0.67 +0.3 60,568 + HP15_p187g67 0.68 +1.4 60,620 + HP15_p187g67 0.72 +0.9 60,635 + HP15_p187g67 0.73 +0.6 60,635 + HP15_p187g67 0.73 +2.4 60,655 + HP15_p187g67 0.75 +1.4 60,685 + HP15_p187g67 0.77 +1.1 60,715 - HP15_p187g67 0.80 -0.8 60,715 - HP15_p187g67 0.80 +1.1 60,723 + HP15_p187g67 0.81 -1.4 60,729 - HP15_p187g67 0.81 -0.6 60,746 + HP15_p187g67 0.83 +0.9 60,780 + HP15_p187g67 0.86 +1.7 60,780 + HP15_p187g67 0.86 +0.1 60,780 + HP15_p187g67 0.86 -0.9 60,780 + HP15_p187g67 0.86 +0.5 60,780 + HP15_p187g67 0.86 -0.6 60,780 + HP15_p187g67 0.86 +0.6 60,788 - HP15_p187g67 0.86 +1.9 60,788 - HP15_p187g67 0.86 +1.5 60,788 - HP15_p187g67 0.86 +0.7 60,806 - HP15_p187g67 0.88 -0.6 60,817 + HP15_p187g67 0.89 +2.0 60,817 + HP15_p187g67 0.89 +2.0 60,817 + HP15_p187g67 0.89 -0.7 60,817 + HP15_p187g67 0.89 -1.4 60,817 + HP15_p187g67 0.89 -0.9 60,824 - HP15_p187g67 0.89 -1.0 60,824 - HP15_p187g67 0.89 +1.2 60,825 - HP15_p187g67 0.89 +2.5 60,866 - -0.1 60,887 + +0.7 60,907 - -0.6 60,998 - +0.8 61,014 + +0.1 61,033 + -0.4 61,048 + +0.6 61,072 + -1.5 61,097 - +0.3 61,120 + +1.9 61,120 + -0.3 61,120 + -0.5 61,128 - +2.0 61,128 - +3.0 61,128 - -1.4 61,145 + HP15_p187g68 0.11 +1.1 61,155 + HP15_p187g68 0.12 +0.6 61,155 + HP15_p187g68 0.12 +1.2 61,155 + HP15_p187g68 0.12 +0.5 61,163 - HP15_p187g68 0.12 +0.6 61,163 - HP15_p187g68 0.12 +1.3 61,163 - HP15_p187g68 0.12 +0.8 61,163 - HP15_p187g68 0.12 +1.0 61,163 - HP15_p187g68 0.12 +1.4 61,168 + HP15_p187g68 0.13 +0.5 61,184 - HP15_p187g68 0.14 +0.2 61,269 - HP15_p187g68 0.21 +1.5 61,325 - HP15_p187g68 0.25 +0.3 61,335 - HP15_p187g68 0.26 +0.4 61,358 - HP15_p187g68 0.28 -1.2 61,363 - HP15_p187g68 0.28 +0.2 61,402 - HP15_p187g68 0.31 -0.5 61,429 + HP15_p187g68 0.33 +0.8 61,429 + HP15_p187g68 0.33 +0.1 61,429 + HP15_p187g68 0.33 +0.0 61,429 - HP15_p187g68 0.33 +1.1 61,437 - HP15_p187g68 0.34 +1.1 61,439 + HP15_p187g68 0.34 +0.1 61,441 + HP15_p187g68 0.34 -0.8 61,441 + HP15_p187g68 0.34 -0.2 61,447 - HP15_p187g68 0.35 +1.6 61,449 - HP15_p187g68 0.35 +1.0 61,503 - HP15_p187g68 0.39 -0.3 61,545 - HP15_p187g68 0.43 +0.3 61,564 - HP15_p187g68 0.44 -0.4 61,585 - HP15_p187g68 0.46 +1.4 61,617 - HP15_p187g68 0.48 +1.5 61,637 + HP15_p187g68 0.50 +0.3 61,689 + HP15_p187g68 0.54 -2.0 61,689 + HP15_p187g68 0.54 +0.3 61,757 - HP15_p187g68 0.59 +1.4 61,792 - HP15_p187g68 0.62 +1.3 61,808 + HP15_p187g68 0.63 +1.1 61,828 + HP15_p187g68 0.65 +0.9 61,858 + HP15_p187g68 0.67 +1.7 61,881 + HP15_p187g68 0.69 -1.1 61,906 + HP15_p187g68 0.71 -0.4 62,016 + HP15_p187g68 0.80 -0.8 62,024 + HP15_p187g68 0.81 +0.1 62,024 + HP15_p187g68 0.81 -0.7 62,024 + HP15_p187g68 0.81 +1.1 62,024 - HP15_p187g68 0.81 +0.7 62,032 - HP15_p187g68 0.81 -1.8 62,032 - HP15_p187g68 0.81 -1.1 62,037 + HP15_p187g68 0.82 +1.8 62,045 - HP15_p187g68 0.82 +0.1 62,055 - HP15_p187g68 0.83 +0.4 62,091 + HP15_p187g68 0.86 +2.4 62,091 + HP15_p187g68 0.86 +0.5 62,137 + HP15_p187g68 0.89 +1.0 62,153 + -0.7 62,193 - -0.1 62,193 - +0.9 62,193 - -1.3 62,263 - +1.7 62,270 + -0.2 62,301 - +0.1 62,311 + -1.4 62,355 - +0.2 62,387 + +0.3 62,428 - +0.6 62,430 - -0.2 62,478 - +1.2 62,478 - -0.4 62,478 - +0.5 62,522 - -1.0 62,524 + +3.2 62,547 + HP15_p187g69 0.11 -2.1 62,552 + HP15_p187g69 0.11 +1.5 62,555 - HP15_p187g69 0.11 +0.9 62,555 - HP15_p187g69 0.11 -0.3 62,578 + HP15_p187g69 0.12 -0.6 62,578 - HP15_p187g69 0.12 +0.1 62,584 - HP15_p187g69 0.13 +0.9 62,607 + HP15_p187g69 0.14 +1.5 62,615 - HP15_p187g69 0.14 +0.1 62,687 - HP15_p187g69 0.18 +0.7 62,687 - HP15_p187g69 0.18 +1.9 62,724 + HP15_p187g69 0.20 +0.9 62,724 - HP15_p187g69 0.20 -0.6 62,734 + HP15_p187g69 0.21 -1.4 62,795 - HP15_p187g69 0.24 +0.9 62,795 - HP15_p187g69 0.24 +0.6 62,825 - HP15_p187g69 0.26 +1.2 62,828 + HP15_p187g69 0.26 -0.5 62,862 - HP15_p187g69 0.28 +0.7 62,867 + HP15_p187g69 0.28 +0.6 62,867 + HP15_p187g69 0.28 -0.4 62,867 + HP15_p187g69 0.28 +1.0 62,867 + HP15_p187g69 0.28 -0.5 62,875 - HP15_p187g69 0.28 -0.3 62,875 - HP15_p187g69 0.28 +0.1 62,893 + HP15_p187g69 0.29 +1.0 62,942 + HP15_p187g69 0.32 -0.1 63,112 - HP15_p187g69 0.41 +0.5 63,161 - HP15_p187g69 0.44 +0.1 63,180 + HP15_p187g69 0.45 +0.0 63,185 + HP15_p187g69 0.45 +1.6 63,188 - HP15_p187g69 0.45 +1.0 63,195 - HP15_p187g69 0.46 -1.3 63,198 - HP15_p187g69 0.46 -1.2 63,228 - HP15_p187g69 0.48 +0.2
Or see this region's nucleotide sequence