Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g2

Experiment: m.b. Tetracycline 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g1 and HP15_p42g2 are separated by 164 nucleotidesHP15_p42g2 and HP15_p42g3 are separated by 48 nucleotides HP15_p42g1: HP15_p42g1 - TrbA protein, at 232 to 561 _p42g1 HP15_p42g2: HP15_p42g2 - single strand DNA binding protein, at 726 to 1,061 _p42g2 HP15_p42g3: HP15_p42g3 - TrfA protein, at 1,110 to 2,240 _p42g3 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.770 kb on - strand, within HP15_p42g2at 0.822 kb on + strand, within HP15_p42g2at 0.827 kb on + strand, within HP15_p42g2at 0.827 kb on + strand, within HP15_p42g2at 0.835 kb on - strand, within HP15_p42g2at 0.835 kb on - strand, within HP15_p42g2at 0.922 kb on + strand, within HP15_p42g2at 0.922 kb on - strand, within HP15_p42g2at 0.930 kb on + strand, within HP15_p42g2at 0.936 kb on + strand, within HP15_p42g2at 0.936 kb on + strand, within HP15_p42g2at 0.936 kb on + strand, within HP15_p42g2at 1.028 kb on + strandat 1.055 kb on + strandat 1.056 kb on + strandat 1.056 kb on + strandat 1.063 kb on - strandat 1.065 kb on - strandat 1.109 kb on - strandat 1.109 kb on - strandat 1.109 kb on - strandat 1.361 kb on + strand, within HP15_p42g3

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml
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770 - HP15_p42g2 0.13 -3.3
822 + HP15_p42g2 0.29 +0.9
827 + HP15_p42g2 0.30 +1.1
827 + HP15_p42g2 0.30 +0.2
835 - HP15_p42g2 0.32 -1.9
835 - HP15_p42g2 0.32 +0.5
922 + HP15_p42g2 0.58 -0.2
922 - HP15_p42g2 0.58 +0.7
930 + HP15_p42g2 0.61 +1.0
936 + HP15_p42g2 0.62 +1.0
936 + HP15_p42g2 0.62 +1.8
936 + HP15_p42g2 0.62 -2.3
1,028 + +0.3
1,055 + +0.6
1,056 + -2.8
1,056 + +0.6
1,063 - -0.7
1,065 - +0.8
1,109 - +0.1
1,109 - +0.1
1,109 - -0.3
1,361 + HP15_p42g3 0.22 -1.9

Or see this region's nucleotide sequence