Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4072 and HP15_4073 are separated by 4 nucleotides HP15_4073 and HP15_4074 are separated by 38 nucleotides HP15_4074 and HP15_4075 are separated by 47 nucleotides HP15_4075 and HP15_4076 are separated by 108 nucleotides
HP15_4072: HP15_4072 - diguanylate cyclase with PAS/PAC sensor, at 4,304,969 to 4,307,230
_4072
HP15_4073: HP15_4073 - universal stress protein family protein, at 4,307,235 to 4,307,675
_4073
HP15_4074: HP15_4074 - C4-dicarboxylate transport system (permease large protein), at 4,307,714 to 4,308,985
_4074
HP15_4075: HP15_4075 - TRAP dicarboxylate transporter, DctQ subunit, at 4,309,033 to 4,309,626
_4075
HP15_4076: HP15_4076 - TRAP dicarboxylate transporter, DctP subunit, at 4,309,735 to 4,310,859
_4076
Position (kb)
4307
4308
4309 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4306.806 kb on + strand, within HP15_4072 at 4307.018 kb on - strand at 4307.036 kb on + strand at 4307.054 kb on + strand at 4307.105 kb on + strand at 4307.107 kb on + strand at 4307.285 kb on - strand, within HP15_4073 at 4307.290 kb on + strand, within HP15_4073 at 4307.306 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.353 kb on + strand, within HP15_4073 at 4307.361 kb on - strand, within HP15_4073 at 4307.654 kb on - strand at 4307.684 kb on + strand at 4307.932 kb on - strand, within HP15_4074 at 4307.944 kb on - strand, within HP15_4074 at 4308.124 kb on - strand, within HP15_4074 at 4308.222 kb on + strand, within HP15_4074 at 4308.260 kb on - strand, within HP15_4074 at 4308.290 kb on + strand, within HP15_4074 at 4308.495 kb on - strand, within HP15_4074 at 4308.659 kb on - strand, within HP15_4074 at 4308.661 kb on + strand, within HP15_4074 at 4308.666 kb on + strand, within HP15_4074 at 4308.688 kb on + strand, within HP15_4074 at 4308.688 kb on + strand, within HP15_4074 at 4308.690 kb on + strand, within HP15_4074 at 4308.696 kb on - strand, within HP15_4074 at 4308.723 kb on + strand, within HP15_4074 at 4308.929 kb on - strand at 4309.001 kb on + strand at 4309.037 kb on - strand at 4309.225 kb on - strand, within HP15_4075 at 4309.274 kb on + strand, within HP15_4075 at 4309.312 kb on + strand, within HP15_4075 at 4309.523 kb on + strand, within HP15_4075 at 4309.530 kb on - strand, within HP15_4075 at 4309.632 kb on - strand at 4309.741 kb on + strand at 4309.741 kb on + strand at 4309.763 kb on + strand at 4309.763 kb on + strand at 4309.763 kb on + strand at 4309.763 kb on + strand at 4309.782 kb on - strand at 4309.816 kb on + strand at 4309.850 kb on + strand, within HP15_4076 at 4309.952 kb on - strand, within HP15_4076 at 4309.978 kb on + strand, within HP15_4076
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 4,306,806 + HP15_4072 0.81 -0.5 4,307,018 - -1.3 4,307,036 + +0.1 4,307,054 + -0.2 4,307,105 + +0.3 4,307,107 + +0.8 4,307,285 - HP15_4073 0.11 +0.2 4,307,290 + HP15_4073 0.12 -0.5 4,307,306 + HP15_4073 0.16 -1.1 4,307,345 + HP15_4073 0.25 +0.3 4,307,345 + HP15_4073 0.25 -0.1 4,307,345 + HP15_4073 0.25 -2.6 4,307,353 + HP15_4073 0.27 +0.3 4,307,361 - HP15_4073 0.29 -1.8 4,307,654 - -0.8 4,307,684 + -0.5 4,307,932 - HP15_4074 0.17 -1.8 4,307,944 - HP15_4074 0.18 -0.6 4,308,124 - HP15_4074 0.32 -0.3 4,308,222 + HP15_4074 0.40 -2.6 4,308,260 - HP15_4074 0.43 -0.0 4,308,290 + HP15_4074 0.45 -0.1 4,308,495 - HP15_4074 0.61 -0.4 4,308,659 - HP15_4074 0.74 +0.0 4,308,661 + HP15_4074 0.74 -0.3 4,308,666 + HP15_4074 0.75 +1.2 4,308,688 + HP15_4074 0.77 -0.2 4,308,688 + HP15_4074 0.77 -1.0 4,308,690 + HP15_4074 0.77 -1.3 4,308,696 - HP15_4074 0.77 -1.2 4,308,723 + HP15_4074 0.79 -0.3 4,308,929 - +0.4 4,309,001 + +1.3 4,309,037 - +0.3 4,309,225 - HP15_4075 0.32 +0.6 4,309,274 + HP15_4075 0.41 +0.4 4,309,312 + HP15_4075 0.47 -0.7 4,309,523 + HP15_4075 0.82 -3.3 4,309,530 - HP15_4075 0.84 +0.7 4,309,632 - +0.3 4,309,741 + -0.5 4,309,741 + +0.4 4,309,763 + +0.3 4,309,763 + -0.3 4,309,763 + +3.6 4,309,763 + -1.8 4,309,782 - +0.7 4,309,816 + +0.1 4,309,850 + HP15_4076 0.10 -1.2 4,309,952 - HP15_4076 0.19 -0.4 4,309,978 + HP15_4076 0.22 -0.3
Or see this region's nucleotide sequence