Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4065 and HP15_4066 are separated by 189 nucleotides HP15_4066 and HP15_4067 are separated by 11 nucleotides
HP15_4065: HP15_4065 - spermidine/putrescine ABC transporter periplasmic substrate-binding protein, at 4,299,417 to 4,300,457
_4065
HP15_4066: HP15_4066 - extracellular solute-binding protein, family 1, at 4,300,647 to 4,301,693
_4066
HP15_4067: HP15_4067 - spermidine/putrescine ABC transporter ATPase subunit, at 4,301,705 to 4,302,793
_4067
Position (kb)
4300
4301
4302 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4299.803 kb on + strand, within HP15_4065 at 4299.859 kb on + strand, within HP15_4065 at 4299.947 kb on + strand, within HP15_4065 at 4299.949 kb on - strand, within HP15_4065 at 4300.076 kb on - strand, within HP15_4065 at 4300.237 kb on - strand, within HP15_4065 at 4300.291 kb on + strand, within HP15_4065 at 4300.370 kb on + strand at 4300.373 kb on - strand at 4300.423 kb on - strand at 4300.577 kb on + strand at 4300.577 kb on + strand at 4300.585 kb on - strand at 4300.635 kb on - strand at 4300.659 kb on + strand at 4300.659 kb on + strand at 4300.667 kb on - strand at 4300.667 kb on - strand at 4300.667 kb on - strand at 4300.784 kb on + strand, within HP15_4066 at 4300.863 kb on + strand, within HP15_4066 at 4300.871 kb on - strand, within HP15_4066 at 4300.936 kb on - strand, within HP15_4066 at 4300.978 kb on + strand, within HP15_4066 at 4301.018 kb on - strand, within HP15_4066 at 4301.039 kb on - strand, within HP15_4066 at 4301.156 kb on - strand, within HP15_4066 at 4301.186 kb on - strand, within HP15_4066 at 4301.219 kb on + strand, within HP15_4066 at 4301.219 kb on + strand, within HP15_4066 at 4301.402 kb on + strand, within HP15_4066 at 4301.408 kb on + strand, within HP15_4066 at 4301.409 kb on + strand, within HP15_4066 at 4301.416 kb on - strand, within HP15_4066 at 4301.547 kb on - strand, within HP15_4066 at 4301.664 kb on + strand at 4301.783 kb on - strand at 4301.807 kb on + strand at 4301.815 kb on - strand, within HP15_4067 at 4302.109 kb on + strand, within HP15_4067 at 4302.114 kb on - strand, within HP15_4067 at 4302.155 kb on - strand, within HP15_4067 at 4302.201 kb on + strand, within HP15_4067 at 4302.228 kb on - strand, within HP15_4067 at 4302.232 kb on + strand, within HP15_4067 at 4302.289 kb on + strand, within HP15_4067 at 4302.289 kb on + strand, within HP15_4067 at 4302.360 kb on + strand, within HP15_4067 at 4302.454 kb on - strand, within HP15_4067 at 4302.483 kb on - strand, within HP15_4067 at 4302.491 kb on + strand, within HP15_4067 at 4302.491 kb on + strand, within HP15_4067 at 4302.496 kb on + strand, within HP15_4067 at 4302.542 kb on - strand, within HP15_4067 at 4302.578 kb on + strand, within HP15_4067 at 4302.590 kb on + strand, within HP15_4067 at 4302.617 kb on + strand, within HP15_4067 at 4302.634 kb on - strand, within HP15_4067 at 4302.660 kb on - strand, within HP15_4067
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 4,299,803 + HP15_4065 0.37 +2.8 4,299,859 + HP15_4065 0.42 -1.3 4,299,947 + HP15_4065 0.51 -0.3 4,299,949 - HP15_4065 0.51 -0.3 4,300,076 - HP15_4065 0.63 +0.8 4,300,237 - HP15_4065 0.79 -0.1 4,300,291 + HP15_4065 0.84 -0.4 4,300,370 + -0.3 4,300,373 - +1.0 4,300,423 - -0.6 4,300,577 + -0.5 4,300,577 + -1.3 4,300,585 - +0.2 4,300,635 - +0.7 4,300,659 + -0.3 4,300,659 + -1.4 4,300,667 - +0.3 4,300,667 - +0.2 4,300,667 - -0.5 4,300,784 + HP15_4066 0.13 +0.0 4,300,863 + HP15_4066 0.21 -0.7 4,300,871 - HP15_4066 0.21 -0.8 4,300,936 - HP15_4066 0.28 +2.4 4,300,978 + HP15_4066 0.32 +0.4 4,301,018 - HP15_4066 0.35 -2.3 4,301,039 - HP15_4066 0.37 -1.1 4,301,156 - HP15_4066 0.49 -2.4 4,301,186 - HP15_4066 0.51 -0.7 4,301,219 + HP15_4066 0.55 -0.4 4,301,219 + HP15_4066 0.55 -0.3 4,301,402 + HP15_4066 0.72 -0.3 4,301,408 + HP15_4066 0.73 -0.8 4,301,409 + HP15_4066 0.73 +1.7 4,301,416 - HP15_4066 0.73 -1.6 4,301,547 - HP15_4066 0.86 -2.3 4,301,664 + -1.1 4,301,783 - +0.4 4,301,807 + -0.2 4,301,815 - HP15_4067 0.10 +0.7 4,302,109 + HP15_4067 0.37 -0.7 4,302,114 - HP15_4067 0.38 -0.5 4,302,155 - HP15_4067 0.41 -0.3 4,302,201 + HP15_4067 0.46 +1.6 4,302,228 - HP15_4067 0.48 +0.2 4,302,232 + HP15_4067 0.48 -0.4 4,302,289 + HP15_4067 0.54 +0.7 4,302,289 + HP15_4067 0.54 +1.7 4,302,360 + HP15_4067 0.60 +1.7 4,302,454 - HP15_4067 0.69 -0.1 4,302,483 - HP15_4067 0.71 -0.0 4,302,491 + HP15_4067 0.72 +0.0 4,302,491 + HP15_4067 0.72 +0.6 4,302,496 + HP15_4067 0.73 +0.8 4,302,542 - HP15_4067 0.77 +2.1 4,302,578 + HP15_4067 0.80 +1.2 4,302,590 + HP15_4067 0.81 +0.7 4,302,617 + HP15_4067 0.84 +0.3 4,302,634 - HP15_4067 0.85 -0.9 4,302,660 - HP15_4067 0.88 -0.4
Or see this region's nucleotide sequence