Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4025 and HP15_4026 overlap by 4 nucleotides HP15_4026 and HP15_4027 are separated by 14 nucleotides HP15_4027 and HP15_4028 are separated by 56 nucleotides HP15_4028 and HP15_4029 are separated by 10 nucleotides
HP15_4025: HP15_4025 - phenol hydroxylase component, at 4,262,764 to 4,263,765
_4025
HP15_4026: HP15_4026 - monooxygenase component MmoB/DmpM, at 4,263,762 to 4,264,031
_4026
HP15_4027: HP15_4027 - phenol hydroxylase oxygenase component, at 4,264,046 to 4,265,593
_4027
HP15_4028: HP15_4028 - phenol hydroxylase conserved region, at 4,265,650 to 4,266,018
_4028
HP15_4029: HP15_4029 - oxidoreductase FAD/NAD(P)-binding domain protein, at 4,266,029 to 4,267,090
_4029
Position (kb)
4264
4265
4266 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4263.064 kb on - strand, within HP15_4025 at 4263.064 kb on - strand, within HP15_4025 at 4263.154 kb on - strand, within HP15_4025 at 4263.256 kb on - strand, within HP15_4025 at 4263.274 kb on + strand, within HP15_4025 at 4263.323 kb on - strand, within HP15_4025 at 4263.409 kb on - strand, within HP15_4025 at 4263.412 kb on + strand, within HP15_4025 at 4263.508 kb on - strand, within HP15_4025 at 4263.530 kb on + strand, within HP15_4025 at 4263.530 kb on + strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.552 kb on + strand, within HP15_4025 at 4263.552 kb on + strand, within HP15_4025 at 4263.604 kb on - strand, within HP15_4025 at 4263.754 kb on - strand at 4263.938 kb on + strand, within HP15_4026 at 4264.115 kb on + strand at 4264.149 kb on - strand at 4264.288 kb on + strand, within HP15_4027 at 4264.369 kb on - strand, within HP15_4027 at 4264.384 kb on + strand, within HP15_4027 at 4264.397 kb on - strand, within HP15_4027 at 4264.408 kb on + strand, within HP15_4027 at 4264.408 kb on + strand, within HP15_4027 at 4264.445 kb on - strand, within HP15_4027 at 4264.472 kb on - strand, within HP15_4027 at 4264.518 kb on - strand, within HP15_4027 at 4264.665 kb on - strand, within HP15_4027 at 4264.743 kb on - strand, within HP15_4027 at 4264.764 kb on + strand, within HP15_4027 at 4264.772 kb on - strand, within HP15_4027 at 4264.785 kb on + strand, within HP15_4027 at 4264.825 kb on - strand, within HP15_4027 at 4264.851 kb on + strand, within HP15_4027 at 4264.934 kb on - strand, within HP15_4027 at 4264.963 kb on + strand, within HP15_4027 at 4264.971 kb on - strand, within HP15_4027 at 4264.971 kb on - strand, within HP15_4027 at 4264.971 kb on - strand, within HP15_4027 at 4264.980 kb on - strand, within HP15_4027 at 4265.158 kb on + strand, within HP15_4027 at 4265.166 kb on - strand, within HP15_4027 at 4265.386 kb on + strand, within HP15_4027 at 4265.524 kb on - strand at 4265.550 kb on - strand at 4265.700 kb on + strand, within HP15_4028 at 4265.707 kb on + strand, within HP15_4028 at 4265.773 kb on + strand, within HP15_4028 at 4265.805 kb on - strand, within HP15_4028 at 4265.827 kb on + strand, within HP15_4028 at 4265.851 kb on + strand, within HP15_4028 at 4265.893 kb on - strand, within HP15_4028 at 4265.933 kb on + strand, within HP15_4028 at 4265.941 kb on - strand, within HP15_4028 at 4265.941 kb on - strand, within HP15_4028 at 4265.941 kb on - strand, within HP15_4028 at 4265.976 kb on + strand, within HP15_4028 at 4265.981 kb on + strand, within HP15_4028 at 4265.989 kb on - strand at 4265.989 kb on - strand at 4266.027 kb on - strand at 4266.109 kb on + strand at 4266.109 kb on + strand at 4266.166 kb on + strand, within HP15_4029 at 4266.180 kb on - strand, within HP15_4029 at 4266.216 kb on + strand, within HP15_4029 at 4266.228 kb on - strand, within HP15_4029 at 4266.241 kb on + strand, within HP15_4029 at 4266.332 kb on + strand, within HP15_4029 at 4266.332 kb on + strand, within HP15_4029 at 4266.337 kb on + strand, within HP15_4029 at 4266.340 kb on - strand, within HP15_4029 at 4266.363 kb on + strand, within HP15_4029 at 4266.382 kb on + strand, within HP15_4029 at 4266.382 kb on + strand, within HP15_4029 at 4266.390 kb on - strand, within HP15_4029 at 4266.431 kb on + strand, within HP15_4029 at 4266.439 kb on + strand, within HP15_4029 at 4266.439 kb on - strand, within HP15_4029 at 4266.495 kb on - strand, within HP15_4029
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 4,263,064 - HP15_4025 0.30 -0.2 4,263,064 - HP15_4025 0.30 +0.3 4,263,154 - HP15_4025 0.39 -0.9 4,263,256 - HP15_4025 0.49 +0.1 4,263,274 + HP15_4025 0.51 -0.0 4,263,323 - HP15_4025 0.56 +0.1 4,263,409 - HP15_4025 0.64 -0.3 4,263,412 + HP15_4025 0.65 +0.1 4,263,508 - HP15_4025 0.74 -0.1 4,263,530 + HP15_4025 0.76 -0.1 4,263,530 + HP15_4025 0.76 +0.2 4,263,538 - HP15_4025 0.77 -0.1 4,263,538 - HP15_4025 0.77 -0.2 4,263,538 - HP15_4025 0.77 -1.6 4,263,552 + HP15_4025 0.79 -1.2 4,263,552 + HP15_4025 0.79 -0.5 4,263,604 - HP15_4025 0.84 -1.2 4,263,754 - +0.9 4,263,938 + HP15_4026 0.65 -1.8 4,264,115 + -0.2 4,264,149 - +0.1 4,264,288 + HP15_4027 0.16 +2.6 4,264,369 - HP15_4027 0.21 -0.7 4,264,384 + HP15_4027 0.22 -0.7 4,264,397 - HP15_4027 0.23 +2.0 4,264,408 + HP15_4027 0.23 -1.8 4,264,408 + HP15_4027 0.23 -1.0 4,264,445 - HP15_4027 0.26 -1.3 4,264,472 - HP15_4027 0.28 -0.0 4,264,518 - HP15_4027 0.30 +0.3 4,264,665 - HP15_4027 0.40 -0.7 4,264,743 - HP15_4027 0.45 +0.1 4,264,764 + HP15_4027 0.46 -0.3 4,264,772 - HP15_4027 0.47 +0.6 4,264,785 + HP15_4027 0.48 +0.5 4,264,825 - HP15_4027 0.50 -0.8 4,264,851 + HP15_4027 0.52 +0.2 4,264,934 - HP15_4027 0.57 -1.2 4,264,963 + HP15_4027 0.59 +0.1 4,264,971 - HP15_4027 0.60 -1.2 4,264,971 - HP15_4027 0.60 -0.4 4,264,971 - HP15_4027 0.60 -0.2 4,264,980 - HP15_4027 0.60 +0.3 4,265,158 + HP15_4027 0.72 -0.5 4,265,166 - HP15_4027 0.72 +0.1 4,265,386 + HP15_4027 0.87 -0.7 4,265,524 - +2.6 4,265,550 - -2.4 4,265,700 + HP15_4028 0.14 -0.6 4,265,707 + HP15_4028 0.15 +0.7 4,265,773 + HP15_4028 0.33 +0.6 4,265,805 - HP15_4028 0.42 +0.4 4,265,827 + HP15_4028 0.48 +0.1 4,265,851 + HP15_4028 0.54 -1.0 4,265,893 - HP15_4028 0.66 -0.7 4,265,933 + HP15_4028 0.77 +0.3 4,265,941 - HP15_4028 0.79 +0.7 4,265,941 - HP15_4028 0.79 -0.6 4,265,941 - HP15_4028 0.79 -0.2 4,265,976 + HP15_4028 0.88 +0.1 4,265,981 + HP15_4028 0.90 -0.0 4,265,989 - +0.3 4,265,989 - -0.5 4,266,027 - +0.6 4,266,109 + -0.6 4,266,109 + -3.8 4,266,166 + HP15_4029 0.13 +0.8 4,266,180 - HP15_4029 0.14 -0.4 4,266,216 + HP15_4029 0.18 -0.9 4,266,228 - HP15_4029 0.19 -0.8 4,266,241 + HP15_4029 0.20 +0.3 4,266,332 + HP15_4029 0.29 -0.0 4,266,332 + HP15_4029 0.29 -0.2 4,266,337 + HP15_4029 0.29 -2.2 4,266,340 - HP15_4029 0.29 +0.1 4,266,363 + HP15_4029 0.31 +1.6 4,266,382 + HP15_4029 0.33 +0.5 4,266,382 + HP15_4029 0.33 -0.3 4,266,390 - HP15_4029 0.34 -0.1 4,266,431 + HP15_4029 0.38 +3.6 4,266,439 + HP15_4029 0.39 +0.9 4,266,439 - HP15_4029 0.39 +1.6 4,266,495 - HP15_4029 0.44 +2.8
Or see this region's nucleotide sequence