Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3901 and HP15_3902 are separated by 133 nucleotides HP15_3902 and HP15_3903 are separated by 9 nucleotides HP15_3903 and HP15_3904 overlap by 1 nucleotides
HP15_3901: HP15_3901 - signal transduction protein, at 4,131,108 to 4,132,529
_3901
HP15_3902: HP15_3902 - hypothetical protein, at 4,132,663 to 4,132,806
_3902
HP15_3903: HP15_3903 - methionine import ATP-binding protein MetN 2, at 4,132,816 to 4,133,748
_3903
HP15_3904: HP15_3904 - binding-protein-dependent transport systems inner membrane component, at 4,133,748 to 4,134,413
_3904
Position (kb) 4132
4133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4131.697 kb on + strand, within HP15_3901 at 4131.704 kb on + strand, within HP15_3901 at 4131.726 kb on - strand, within HP15_3901 at 4131.782 kb on - strand, within HP15_3901 at 4131.802 kb on + strand, within HP15_3901 at 4131.802 kb on + strand, within HP15_3901 at 4131.810 kb on - strand, within HP15_3901 at 4131.812 kb on + strand, within HP15_3901 at 4131.860 kb on - strand, within HP15_3901 at 4131.923 kb on + strand, within HP15_3901 at 4131.965 kb on - strand, within HP15_3901 at 4132.036 kb on - strand, within HP15_3901 at 4132.178 kb on - strand, within HP15_3901 at 4132.203 kb on - strand, within HP15_3901 at 4132.262 kb on + strand, within HP15_3901 at 4132.262 kb on + strand, within HP15_3901 at 4132.270 kb on - strand, within HP15_3901 at 4132.270 kb on - strand, within HP15_3901 at 4132.282 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.318 kb on + strand, within HP15_3901 at 4132.326 kb on - strand, within HP15_3901 at 4132.345 kb on - strand, within HP15_3901 at 4132.350 kb on - strand, within HP15_3901 at 4132.372 kb on - strand, within HP15_3901 at 4132.425 kb on + strand at 4132.532 kb on - strand at 4132.539 kb on + strand at 4132.614 kb on - strand at 4132.716 kb on + strand, within HP15_3902 at 4132.719 kb on - strand, within HP15_3902 at 4132.919 kb on + strand, within HP15_3903 at 4132.963 kb on + strand, within HP15_3903 at 4133.010 kb on + strand, within HP15_3903 at 4133.017 kb on - strand, within HP15_3903 at 4133.400 kb on + strand, within HP15_3903 at 4133.409 kb on - strand, within HP15_3903 at 4133.480 kb on + strand, within HP15_3903 at 4133.514 kb on - strand, within HP15_3903 at 4133.544 kb on - strand, within HP15_3903 at 4133.569 kb on - strand, within HP15_3903 at 4133.637 kb on + strand, within HP15_3903 at 4133.687 kb on + strand at 4133.717 kb on - strand at 4133.737 kb on + strand at 4133.745 kb on - strand at 4133.757 kb on + strand at 4133.800 kb on + strand at 4133.805 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 4,131,697 + HP15_3901 0.41 -3.4 4,131,704 + HP15_3901 0.42 -0.6 4,131,726 - HP15_3901 0.43 -1.6 4,131,782 - HP15_3901 0.47 -0.2 4,131,802 + HP15_3901 0.49 +0.6 4,131,802 + HP15_3901 0.49 -2.0 4,131,810 - HP15_3901 0.49 -0.3 4,131,812 + HP15_3901 0.50 -0.2 4,131,860 - HP15_3901 0.53 +0.4 4,131,923 + HP15_3901 0.57 +0.8 4,131,965 - HP15_3901 0.60 +0.2 4,132,036 - HP15_3901 0.65 +0.2 4,132,178 - HP15_3901 0.75 -0.7 4,132,203 - HP15_3901 0.77 -3.4 4,132,262 + HP15_3901 0.81 -1.5 4,132,262 + HP15_3901 0.81 +0.4 4,132,270 - HP15_3901 0.82 +0.2 4,132,270 - HP15_3901 0.82 +0.6 4,132,282 + HP15_3901 0.83 -1.4 4,132,318 + HP15_3901 0.85 +0.1 4,132,318 + HP15_3901 0.85 -0.0 4,132,318 + HP15_3901 0.85 +0.4 4,132,318 + HP15_3901 0.85 +0.6 4,132,318 + HP15_3901 0.85 -1.0 4,132,326 - HP15_3901 0.86 +0.8 4,132,345 - HP15_3901 0.87 +1.8 4,132,350 - HP15_3901 0.87 +0.2 4,132,372 - HP15_3901 0.89 -0.1 4,132,425 + +1.5 4,132,532 - +0.3 4,132,539 + +0.9 4,132,614 - -0.5 4,132,716 + HP15_3902 0.37 -1.2 4,132,719 - HP15_3902 0.39 -0.1 4,132,919 + HP15_3903 0.11 +0.5 4,132,963 + HP15_3903 0.16 -0.5 4,133,010 + HP15_3903 0.21 +0.3 4,133,017 - HP15_3903 0.22 -0.2 4,133,400 + HP15_3903 0.63 +0.8 4,133,409 - HP15_3903 0.64 -2.6 4,133,480 + HP15_3903 0.71 +1.4 4,133,514 - HP15_3903 0.75 -0.5 4,133,544 - HP15_3903 0.78 -0.6 4,133,569 - HP15_3903 0.81 +1.0 4,133,637 + HP15_3903 0.88 -0.9 4,133,687 + +0.5 4,133,717 - -0.2 4,133,737 + +1.1 4,133,745 - +0.3 4,133,757 + -0.2 4,133,800 + -0.1 4,133,805 + +1.6
Or see this region's nucleotide sequence