Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3817 and HP15_3818 are separated by 128 nucleotides HP15_3818 and HP15_3819 are separated by 9 nucleotides
HP15_3817: HP15_3817 - alpha/beta hydrolase fold-like protein, at 4,042,165 to 4,043,052
_3817
HP15_3818: HP15_3818 - extracellular nuclease, at 4,043,181 to 4,044,941
_3818
HP15_3819: HP15_3819 - transcriptional regulator, DeoR, predicted, at 4,044,951 to 4,045,892
_3819
Position (kb)
4043
4044
4045 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4042.191 kb on + strand at 4042.255 kb on - strand, within HP15_3817 at 4042.432 kb on - strand, within HP15_3817 at 4042.507 kb on + strand, within HP15_3817 at 4042.515 kb on - strand, within HP15_3817 at 4042.565 kb on + strand, within HP15_3817 at 4042.565 kb on + strand, within HP15_3817 at 4042.573 kb on - strand, within HP15_3817 at 4042.573 kb on - strand, within HP15_3817 at 4042.591 kb on - strand, within HP15_3817 at 4042.686 kb on + strand, within HP15_3817 at 4042.694 kb on - strand, within HP15_3817 at 4042.720 kb on - strand, within HP15_3817 at 4042.761 kb on - strand, within HP15_3817 at 4042.824 kb on - strand, within HP15_3817 at 4043.024 kb on + strand at 4043.094 kb on + strand at 4043.121 kb on - strand at 4043.272 kb on + strand at 4043.279 kb on + strand at 4043.345 kb on + strand at 4043.364 kb on + strand, within HP15_3818 at 4043.364 kb on + strand, within HP15_3818 at 4043.364 kb on + strand, within HP15_3818 at 4043.439 kb on + strand, within HP15_3818 at 4043.447 kb on - strand, within HP15_3818 at 4043.606 kb on - strand, within HP15_3818 at 4043.611 kb on + strand, within HP15_3818 at 4043.666 kb on + strand, within HP15_3818 at 4043.802 kb on + strand, within HP15_3818 at 4043.958 kb on + strand, within HP15_3818 at 4043.966 kb on - strand, within HP15_3818 at 4044.082 kb on + strand, within HP15_3818 at 4044.158 kb on + strand, within HP15_3818 at 4044.158 kb on + strand, within HP15_3818 at 4044.273 kb on - strand, within HP15_3818 at 4044.289 kb on + strand, within HP15_3818 at 4044.297 kb on - strand, within HP15_3818 at 4044.392 kb on + strand, within HP15_3818 at 4044.480 kb on - strand, within HP15_3818 at 4044.550 kb on - strand, within HP15_3818 at 4044.564 kb on + strand, within HP15_3818 at 4044.572 kb on - strand, within HP15_3818 at 4044.801 kb on + strand at 4044.815 kb on - strand at 4044.941 kb on + strand at 4044.970 kb on + strand at 4045.131 kb on + strand, within HP15_3819 at 4045.382 kb on - strand, within HP15_3819 at 4045.606 kb on + strand, within HP15_3819 at 4045.774 kb on + strand, within HP15_3819 at 4045.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 4,042,191 + +0.3 4,042,255 - HP15_3817 0.10 +0.3 4,042,432 - HP15_3817 0.30 +0.8 4,042,507 + HP15_3817 0.39 -0.1 4,042,515 - HP15_3817 0.39 -0.0 4,042,565 + HP15_3817 0.45 -0.5 4,042,565 + HP15_3817 0.45 +1.1 4,042,573 - HP15_3817 0.46 +0.7 4,042,573 - HP15_3817 0.46 +0.6 4,042,591 - HP15_3817 0.48 -3.0 4,042,686 + HP15_3817 0.59 +0.7 4,042,694 - HP15_3817 0.60 +1.4 4,042,720 - HP15_3817 0.62 -0.4 4,042,761 - HP15_3817 0.67 -1.5 4,042,824 - HP15_3817 0.74 +0.4 4,043,024 + -1.8 4,043,094 + -0.5 4,043,121 - +0.6 4,043,272 + -0.4 4,043,279 + -0.1 4,043,345 + +1.2 4,043,364 + HP15_3818 0.10 +0.1 4,043,364 + HP15_3818 0.10 +2.2 4,043,364 + HP15_3818 0.10 -1.6 4,043,439 + HP15_3818 0.15 -0.3 4,043,447 - HP15_3818 0.15 +0.9 4,043,606 - HP15_3818 0.24 -1.2 4,043,611 + HP15_3818 0.24 -0.4 4,043,666 + HP15_3818 0.28 -0.9 4,043,802 + HP15_3818 0.35 +1.4 4,043,958 + HP15_3818 0.44 +0.9 4,043,966 - HP15_3818 0.45 -1.4 4,044,082 + HP15_3818 0.51 +0.5 4,044,158 + HP15_3818 0.55 -0.6 4,044,158 + HP15_3818 0.55 +0.0 4,044,273 - HP15_3818 0.62 -0.3 4,044,289 + HP15_3818 0.63 -0.5 4,044,297 - HP15_3818 0.63 +0.8 4,044,392 + HP15_3818 0.69 +1.0 4,044,480 - HP15_3818 0.74 -0.4 4,044,550 - HP15_3818 0.78 +0.2 4,044,564 + HP15_3818 0.79 -1.2 4,044,572 - HP15_3818 0.79 +0.1 4,044,801 + +1.2 4,044,815 - +0.5 4,044,941 + +0.1 4,044,970 + +2.5 4,045,131 + HP15_3819 0.19 -0.2 4,045,382 - HP15_3819 0.46 -1.0 4,045,606 + HP15_3819 0.70 -1.2 4,045,774 + HP15_3819 0.87 +0.8 4,045,917 - +1.1
Or see this region's nucleotide sequence