Strain Fitness in Marinobacter adhaerens HP15 around HP15_3492

Experiment: m.b. Tetracycline 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3490 and HP15_3491 are separated by 161 nucleotidesHP15_3491 and HP15_3492 are separated by 77 nucleotidesHP15_3492 and HP15_3493 are separated by 215 nucleotides HP15_3490: HP15_3490 - signal recognition particle-docking protein FtsY, at 3,674,996 to 3,676,189 _3490 HP15_3491: HP15_3491 - conserved hypothetical protein, at 3,676,351 to 3,677,001 _3491 HP15_3492: HP15_3492 - fatty acid desaturase, at 3,677,079 to 3,678,257 _3492 HP15_3493: HP15_3493 - formamidopyrimidine-DNA glycosylase, at 3,678,473 to 3,679,210 _3493 Position (kb) 3677 3678 3679Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3676.249 kb on + strandat 3676.317 kb on + strandat 3676.384 kb on - strandat 3676.423 kb on + strand, within HP15_3491at 3676.475 kb on + strand, within HP15_3491at 3676.513 kb on - strand, within HP15_3491at 3676.540 kb on + strand, within HP15_3491at 3676.563 kb on - strand, within HP15_3491at 3676.659 kb on + strand, within HP15_3491at 3676.672 kb on - strand, within HP15_3491at 3676.674 kb on + strand, within HP15_3491at 3676.674 kb on + strand, within HP15_3491at 3676.676 kb on + strand, within HP15_3491at 3676.682 kb on - strand, within HP15_3491at 3676.741 kb on - strand, within HP15_3491at 3676.893 kb on - strand, within HP15_3491at 3676.893 kb on - strand, within HP15_3491at 3676.972 kb on - strandat 3676.982 kb on - strandat 3677.104 kb on + strandat 3677.126 kb on + strandat 3677.274 kb on + strand, within HP15_3492at 3677.279 kb on + strand, within HP15_3492at 3677.284 kb on + strand, within HP15_3492at 3677.342 kb on - strand, within HP15_3492at 3677.463 kb on + strand, within HP15_3492at 3677.471 kb on - strand, within HP15_3492at 3677.471 kb on - strand, within HP15_3492at 3677.527 kb on + strand, within HP15_3492at 3677.527 kb on + strand, within HP15_3492at 3677.527 kb on + strand, within HP15_3492at 3677.527 kb on + strand, within HP15_3492at 3677.573 kb on - strand, within HP15_3492at 3677.596 kb on - strand, within HP15_3492at 3677.609 kb on + strand, within HP15_3492at 3677.617 kb on - strand, within HP15_3492at 3677.648 kb on + strand, within HP15_3492at 3677.748 kb on - strand, within HP15_3492at 3677.766 kb on - strand, within HP15_3492at 3677.778 kb on + strand, within HP15_3492at 3677.793 kb on + strand, within HP15_3492at 3677.801 kb on - strand, within HP15_3492at 3677.848 kb on + strand, within HP15_3492at 3677.868 kb on + strand, within HP15_3492at 3677.876 kb on - strand, within HP15_3492at 3677.892 kb on + strand, within HP15_3492at 3677.894 kb on + strand, within HP15_3492at 3677.894 kb on + strand, within HP15_3492at 3677.912 kb on - strand, within HP15_3492at 3677.917 kb on - strand, within HP15_3492at 3677.947 kb on + strand, within HP15_3492at 3677.950 kb on - strand, within HP15_3492at 3677.950 kb on - strand, within HP15_3492at 3677.955 kb on - strand, within HP15_3492at 3677.962 kb on + strand, within HP15_3492at 3677.967 kb on + strand, within HP15_3492at 3677.970 kb on - strand, within HP15_3492at 3677.975 kb on - strand, within HP15_3492at 3678.020 kb on - strand, within HP15_3492at 3678.062 kb on - strand, within HP15_3492at 3678.081 kb on + strand, within HP15_3492at 3678.138 kb on + strand, within HP15_3492at 3678.144 kb on - strandat 3678.241 kb on - strandat 3678.399 kb on + strandat 3678.399 kb on + strandat 3678.399 kb on + strandat 3678.407 kb on - strandat 3678.435 kb on + strandat 3678.435 kb on + strandat 3678.435 kb on + strandat 3678.443 kb on - strandat 3678.496 kb on + strandat 3678.501 kb on + strandat 3678.501 kb on + strandat 3678.501 kb on + strandat 3678.567 kb on - strand, within HP15_3493at 3678.654 kb on + strand, within HP15_3493at 3678.694 kb on - strand, within HP15_3493at 3678.699 kb on + strand, within HP15_3493at 3678.707 kb on - strand, within HP15_3493at 3678.713 kb on - strand, within HP15_3493at 3678.755 kb on - strand, within HP15_3493at 3678.907 kb on + strand, within HP15_3493at 3678.915 kb on - strand, within HP15_3493at 3678.952 kb on + strand, within HP15_3493at 3678.980 kb on + strand, within HP15_3493at 3678.992 kb on - strand, within HP15_3493at 3678.994 kb on + strand, within HP15_3493at 3679.002 kb on - strand, within HP15_3493at 3679.047 kb on + strand, within HP15_3493at 3679.055 kb on - strand, within HP15_3493at 3679.096 kb on + strand, within HP15_3493at 3679.104 kb on - strand, within HP15_3493at 3679.106 kb on + strand, within HP15_3493

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml
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3,676,249 + -0.1
3,676,317 + -0.8
3,676,384 - +0.8
3,676,423 + HP15_3491 0.11 -1.5
3,676,475 + HP15_3491 0.19 -1.2
3,676,513 - HP15_3491 0.25 -2.2
3,676,540 + HP15_3491 0.29 -1.3
3,676,563 - HP15_3491 0.33 -2.6
3,676,659 + HP15_3491 0.47 -1.3
3,676,672 - HP15_3491 0.49 -0.6
3,676,674 + HP15_3491 0.50 -0.2
3,676,674 + HP15_3491 0.50 -3.4
3,676,676 + HP15_3491 0.50 -0.2
3,676,682 - HP15_3491 0.51 -1.6
3,676,741 - HP15_3491 0.60 -0.9
3,676,893 - HP15_3491 0.83 +0.8
3,676,893 - HP15_3491 0.83 -0.6
3,676,972 - -0.2
3,676,982 - -0.3
3,677,104 + +1.2
3,677,126 + +0.2
3,677,274 + HP15_3492 0.17 +1.7
3,677,279 + HP15_3492 0.17 +0.8
3,677,284 + HP15_3492 0.17 +0.7
3,677,342 - HP15_3492 0.22 +0.5
3,677,463 + HP15_3492 0.33 +1.4
3,677,471 - HP15_3492 0.33 +1.1
3,677,471 - HP15_3492 0.33 -0.2
3,677,527 + HP15_3492 0.38 +0.2
3,677,527 + HP15_3492 0.38 +0.1
3,677,527 + HP15_3492 0.38 +0.7
3,677,527 + HP15_3492 0.38 +1.0
3,677,573 - HP15_3492 0.42 -0.5
3,677,596 - HP15_3492 0.44 -0.8
3,677,609 + HP15_3492 0.45 +0.3
3,677,617 - HP15_3492 0.46 +0.6
3,677,648 + HP15_3492 0.48 -0.1
3,677,748 - HP15_3492 0.57 -0.6
3,677,766 - HP15_3492 0.58 +0.2
3,677,778 + HP15_3492 0.59 +1.4
3,677,793 + HP15_3492 0.61 +0.1
3,677,801 - HP15_3492 0.61 +0.2
3,677,848 + HP15_3492 0.65 +1.2
3,677,868 + HP15_3492 0.67 +0.2
3,677,876 - HP15_3492 0.68 +0.7
3,677,892 + HP15_3492 0.69 +0.5
3,677,894 + HP15_3492 0.69 +0.5
3,677,894 + HP15_3492 0.69 +0.6
3,677,912 - HP15_3492 0.71 -0.6
3,677,917 - HP15_3492 0.71 -0.9
3,677,947 + HP15_3492 0.74 +1.1
3,677,950 - HP15_3492 0.74 +0.2
3,677,950 - HP15_3492 0.74 +0.4
3,677,955 - HP15_3492 0.74 +1.1
3,677,962 + HP15_3492 0.75 -1.1
3,677,967 + HP15_3492 0.75 +0.4
3,677,970 - HP15_3492 0.76 +0.1
3,677,975 - HP15_3492 0.76 +0.7
3,678,020 - HP15_3492 0.80 -0.8
3,678,062 - HP15_3492 0.83 +0.4
3,678,081 + HP15_3492 0.85 +0.0
3,678,138 + HP15_3492 0.90 +0.4
3,678,144 - +1.0
3,678,241 - -1.1
3,678,399 + +0.6
3,678,399 + +0.5
3,678,399 + -1.4
3,678,407 - +0.2
3,678,435 + +0.5
3,678,435 + +0.0
3,678,435 + -1.4
3,678,443 - +0.1
3,678,496 + +0.7
3,678,501 + -0.4
3,678,501 + +0.3
3,678,501 + -0.5
3,678,567 - HP15_3493 0.13 +0.0
3,678,654 + HP15_3493 0.25 +0.6
3,678,694 - HP15_3493 0.30 -0.5
3,678,699 + HP15_3493 0.31 +0.6
3,678,707 - HP15_3493 0.32 +0.0
3,678,713 - HP15_3493 0.33 +2.4
3,678,755 - HP15_3493 0.38 -2.0
3,678,907 + HP15_3493 0.59 -0.2
3,678,915 - HP15_3493 0.60 -2.8
3,678,952 + HP15_3493 0.65 -0.2
3,678,980 + HP15_3493 0.69 +1.5
3,678,992 - HP15_3493 0.70 +2.6
3,678,994 + HP15_3493 0.71 -0.3
3,679,002 - HP15_3493 0.72 +0.5
3,679,047 + HP15_3493 0.78 +0.1
3,679,055 - HP15_3493 0.79 +0.6
3,679,096 + HP15_3493 0.84 +1.4
3,679,104 - HP15_3493 0.86 -0.1
3,679,106 + HP15_3493 0.86 +0.2

Or see this region's nucleotide sequence