Strain Fitness in Marinobacter adhaerens HP15 around HP15_3446

Experiment: m.b. Tetracycline 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3444 and HP15_3445 are separated by 48 nucleotidesHP15_3445 and HP15_3446 overlap by 4 nucleotidesHP15_3446 and HP15_3447 are separated by 193 nucleotidesHP15_3447 and HP15_3448 are separated by 3 nucleotides HP15_3444: HP15_3444 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,622,298 to 3,622,996 _3444 HP15_3445: HP15_3445 - sortase family protein, at 3,623,045 to 3,623,635 _3445 HP15_3446: HP15_3446 - protein containing a von Willebrand factor type A (vWA) domain, at 3,623,632 to 3,625,746 _3446 HP15_3447: HP15_3447 - two component transcriptional regulator, winged helix family, at 3,625,940 to 3,626,641 _3447 HP15_3448: HP15_3448 - integral membrane sensor signal transduction histidine kinase, at 3,626,645 to 3,628,675 _3448 Position (kb) 3623 3624 3625 3626Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3622.679 kb on - strand, within HP15_3444at 3622.689 kb on - strand, within HP15_3444at 3622.703 kb on - strand, within HP15_3444at 3622.826 kb on + strand, within HP15_3444at 3622.836 kb on - strand, within HP15_3444at 3623.108 kb on + strand, within HP15_3445at 3623.145 kb on + strand, within HP15_3445at 3623.146 kb on + strand, within HP15_3445at 3623.164 kb on + strand, within HP15_3445at 3623.190 kb on + strand, within HP15_3445at 3623.195 kb on + strand, within HP15_3445at 3623.198 kb on - strand, within HP15_3445at 3623.229 kb on + strand, within HP15_3445at 3623.246 kb on - strand, within HP15_3445at 3623.259 kb on + strand, within HP15_3445at 3623.259 kb on + strand, within HP15_3445at 3623.259 kb on + strand, within HP15_3445at 3623.259 kb on + strand, within HP15_3445at 3623.267 kb on - strand, within HP15_3445at 3623.267 kb on - strand, within HP15_3445at 3623.299 kb on + strand, within HP15_3445at 3623.309 kb on + strand, within HP15_3445at 3623.417 kb on - strand, within HP15_3445at 3623.430 kb on + strand, within HP15_3445at 3623.588 kb on + strandat 3623.593 kb on + strandat 3623.727 kb on + strandat 3623.802 kb on + strandat 3623.802 kb on + strandat 3623.810 kb on - strandat 3623.853 kb on - strand, within HP15_3446at 3623.874 kb on - strand, within HP15_3446at 3623.897 kb on - strand, within HP15_3446at 3624.000 kb on + strand, within HP15_3446at 3624.009 kb on + strand, within HP15_3446at 3624.331 kb on - strand, within HP15_3446at 3624.423 kb on + strand, within HP15_3446at 3624.423 kb on + strand, within HP15_3446at 3624.423 kb on + strand, within HP15_3446at 3624.431 kb on - strand, within HP15_3446at 3624.461 kb on + strand, within HP15_3446at 3624.602 kb on + strand, within HP15_3446at 3624.603 kb on + strand, within HP15_3446at 3624.603 kb on + strand, within HP15_3446at 3624.610 kb on - strand, within HP15_3446at 3624.631 kb on + strand, within HP15_3446at 3624.639 kb on - strand, within HP15_3446at 3624.643 kb on + strand, within HP15_3446at 3624.681 kb on + strand, within HP15_3446at 3624.737 kb on - strand, within HP15_3446at 3624.767 kb on + strand, within HP15_3446at 3624.769 kb on - strand, within HP15_3446at 3624.782 kb on + strand, within HP15_3446at 3624.785 kb on - strand, within HP15_3446at 3624.814 kb on + strand, within HP15_3446at 3624.941 kb on - strand, within HP15_3446at 3625.165 kb on - strand, within HP15_3446at 3625.172 kb on + strand, within HP15_3446at 3625.242 kb on + strand, within HP15_3446at 3625.527 kb on - strand, within HP15_3446at 3625.625 kb on - strandat 3625.659 kb on + strandat 3625.664 kb on + strandat 3625.667 kb on - strandat 3625.667 kb on - strandat 3625.763 kb on + strandat 3625.763 kb on + strandat 3625.765 kb on + strandat 3625.771 kb on - strandat 3625.781 kb on - strandat 3626.008 kb on - strandat 3626.146 kb on + strand, within HP15_3447at 3626.304 kb on - strand, within HP15_3447at 3626.304 kb on - strand, within HP15_3447at 3626.317 kb on + strand, within HP15_3447at 3626.443 kb on + strand, within HP15_3447

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml
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3,622,679 - HP15_3444 0.55 +0.7
3,622,689 - HP15_3444 0.56 +0.1
3,622,703 - HP15_3444 0.58 +1.0
3,622,826 + HP15_3444 0.76 +3.4
3,622,836 - HP15_3444 0.77 +0.2
3,623,108 + HP15_3445 0.11 +0.5
3,623,145 + HP15_3445 0.17 +0.3
3,623,146 + HP15_3445 0.17 +1.0
3,623,164 + HP15_3445 0.20 -1.2
3,623,190 + HP15_3445 0.25 -0.7
3,623,195 + HP15_3445 0.25 +0.7
3,623,198 - HP15_3445 0.26 -1.4
3,623,229 + HP15_3445 0.31 +0.4
3,623,246 - HP15_3445 0.34 +1.4
3,623,259 + HP15_3445 0.36 +0.1
3,623,259 + HP15_3445 0.36 -0.2
3,623,259 + HP15_3445 0.36 +1.9
3,623,259 + HP15_3445 0.36 -0.1
3,623,267 - HP15_3445 0.38 +0.6
3,623,267 - HP15_3445 0.38 +0.0
3,623,299 + HP15_3445 0.43 +0.9
3,623,309 + HP15_3445 0.45 -0.5
3,623,417 - HP15_3445 0.63 -0.7
3,623,430 + HP15_3445 0.65 +2.7
3,623,588 + +0.4
3,623,593 + +0.3
3,623,727 + +0.0
3,623,802 + +0.7
3,623,802 + -0.8
3,623,810 - -1.0
3,623,853 - HP15_3446 0.10 -1.3
3,623,874 - HP15_3446 0.11 -0.6
3,623,897 - HP15_3446 0.13 +0.2
3,624,000 + HP15_3446 0.17 +0.3
3,624,009 + HP15_3446 0.18 -0.5
3,624,331 - HP15_3446 0.33 -2.1
3,624,423 + HP15_3446 0.37 -0.6
3,624,423 + HP15_3446 0.37 -0.8
3,624,423 + HP15_3446 0.37 -0.3
3,624,431 - HP15_3446 0.38 +0.0
3,624,461 + HP15_3446 0.39 +0.0
3,624,602 + HP15_3446 0.46 -0.5
3,624,603 + HP15_3446 0.46 -0.3
3,624,603 + HP15_3446 0.46 +1.1
3,624,610 - HP15_3446 0.46 +0.1
3,624,631 + HP15_3446 0.47 +0.2
3,624,639 - HP15_3446 0.48 -0.2
3,624,643 + HP15_3446 0.48 -0.7
3,624,681 + HP15_3446 0.50 -0.7
3,624,737 - HP15_3446 0.52 +0.1
3,624,767 + HP15_3446 0.54 +0.6
3,624,769 - HP15_3446 0.54 -1.3
3,624,782 + HP15_3446 0.54 +0.1
3,624,785 - HP15_3446 0.55 +0.8
3,624,814 + HP15_3446 0.56 +0.2
3,624,941 - HP15_3446 0.62 +0.2
3,625,165 - HP15_3446 0.72 -0.2
3,625,172 + HP15_3446 0.73 -2.2
3,625,242 + HP15_3446 0.76 +0.7
3,625,527 - HP15_3446 0.90 -0.2
3,625,625 - -0.6
3,625,659 + +0.2
3,625,664 + +0.3
3,625,667 - +0.5
3,625,667 - +2.2
3,625,763 + -0.3
3,625,763 + +0.0
3,625,765 + -0.4
3,625,771 - +0.8
3,625,781 - +0.7
3,626,008 - +0.0
3,626,146 + HP15_3447 0.29 +1.1
3,626,304 - HP15_3447 0.52 -0.3
3,626,304 - HP15_3447 0.52 +0.3
3,626,317 + HP15_3447 0.54 -2.5
3,626,443 + HP15_3447 0.72 +0.4

Or see this region's nucleotide sequence