Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2731 and HP15_2732 are separated by 210 nucleotides HP15_2732 and HP15_2733 are separated by 200 nucleotides
HP15_2731: HP15_2731 - choline/carnitine/betaine transporter, at 2,882,201 to 2,883,685
_2731
HP15_2732: HP15_2732 - drug resistance transporter, Bcr/CflA subfamily, at 2,883,896 to 2,885,089
_2732
HP15_2733: HP15_2733 - protein containing sulphatase-modifying factor domain, at 2,885,290 to 2,887,350
_2733
Position (kb)
2883
2884
2885
2886 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2882.961 kb on + strand, within HP15_2731 at 2882.969 kb on - strand, within HP15_2731 at 2883.002 kb on + strand, within HP15_2731 at 2883.103 kb on + strand, within HP15_2731 at 2883.153 kb on + strand, within HP15_2731 at 2883.219 kb on + strand, within HP15_2731 at 2883.227 kb on - strand, within HP15_2731 at 2883.232 kb on - strand, within HP15_2731 at 2883.245 kb on + strand, within HP15_2731 at 2883.253 kb on - strand, within HP15_2731 at 2883.277 kb on - strand, within HP15_2731 at 2883.279 kb on + strand, within HP15_2731 at 2883.287 kb on - strand, within HP15_2731 at 2883.443 kb on - strand, within HP15_2731 at 2883.479 kb on - strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.515 kb on + strand, within HP15_2731 at 2883.520 kb on + strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.523 kb on - strand, within HP15_2731 at 2883.606 kb on + strand at 2883.696 kb on + strand at 2883.704 kb on - strand at 2883.753 kb on + strand at 2883.760 kb on + strand at 2883.784 kb on + strand at 2883.896 kb on - strand at 2883.933 kb on - strand at 2883.933 kb on - strand at 2884.058 kb on - strand, within HP15_2732 at 2884.104 kb on + strand, within HP15_2732 at 2884.162 kb on + strand, within HP15_2732 at 2884.212 kb on - strand, within HP15_2732 at 2884.229 kb on + strand, within HP15_2732 at 2884.272 kb on + strand, within HP15_2732 at 2884.368 kb on - strand, within HP15_2732 at 2884.368 kb on - strand, within HP15_2732 at 2884.368 kb on - strand, within HP15_2732 at 2884.437 kb on + strand, within HP15_2732 at 2884.573 kb on + strand, within HP15_2732 at 2884.671 kb on + strand, within HP15_2732 at 2884.783 kb on + strand, within HP15_2732 at 2884.791 kb on - strand, within HP15_2732 at 2884.844 kb on - strand, within HP15_2732 at 2884.899 kb on + strand, within HP15_2732 at 2884.985 kb on + strand at 2884.988 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2884.993 kb on - strand at 2885.155 kb on + strand at 2885.267 kb on - strand at 2885.525 kb on + strand, within HP15_2733 at 2885.611 kb on - strand, within HP15_2733 at 2885.611 kb on - strand, within HP15_2733 at 2885.615 kb on + strand, within HP15_2733 at 2885.740 kb on - strand, within HP15_2733 at 2885.835 kb on - strand, within HP15_2733 at 2885.859 kb on + strand, within HP15_2733 at 2885.931 kb on + strand, within HP15_2733 at 2885.931 kb on + strand, within HP15_2733 at 2885.931 kb on + strand, within HP15_2733 at 2885.939 kb on - strand, within HP15_2733 at 2885.939 kb on - strand, within HP15_2733 at 2885.939 kb on - strand, within HP15_2733 at 2885.985 kb on + strand, within HP15_2733 at 2885.985 kb on + strand, within HP15_2733 at 2886.017 kb on - strand, within HP15_2733 at 2886.019 kb on + strand, within HP15_2733
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 2,882,961 + HP15_2731 0.51 -0.8 2,882,969 - HP15_2731 0.52 -1.4 2,883,002 + HP15_2731 0.54 -1.9 2,883,103 + HP15_2731 0.61 +0.2 2,883,153 + HP15_2731 0.64 -1.5 2,883,219 + HP15_2731 0.69 -0.5 2,883,227 - HP15_2731 0.69 +0.9 2,883,232 - HP15_2731 0.69 +0.5 2,883,245 + HP15_2731 0.70 -0.8 2,883,253 - HP15_2731 0.71 +0.0 2,883,277 - HP15_2731 0.72 -1.2 2,883,279 + HP15_2731 0.73 +0.2 2,883,287 - HP15_2731 0.73 +2.8 2,883,443 - HP15_2731 0.84 +0.1 2,883,479 - HP15_2731 0.86 -0.4 2,883,515 + HP15_2731 0.88 +0.2 2,883,515 + HP15_2731 0.88 -0.8 2,883,515 + HP15_2731 0.88 -0.2 2,883,515 + HP15_2731 0.88 -1.7 2,883,515 + HP15_2731 0.88 -0.1 2,883,520 + HP15_2731 0.89 -0.7 2,883,523 - HP15_2731 0.89 -1.5 2,883,523 - HP15_2731 0.89 -0.0 2,883,523 - HP15_2731 0.89 -0.7 2,883,523 - HP15_2731 0.89 -0.1 2,883,523 - HP15_2731 0.89 -1.0 2,883,606 + +2.2 2,883,696 + -0.4 2,883,704 - +1.7 2,883,753 + -1.5 2,883,760 + -0.4 2,883,784 + -0.8 2,883,896 - -0.9 2,883,933 - +0.1 2,883,933 - -0.4 2,884,058 - HP15_2732 0.14 +1.3 2,884,104 + HP15_2732 0.17 +0.7 2,884,162 + HP15_2732 0.22 -0.6 2,884,212 - HP15_2732 0.26 +0.1 2,884,229 + HP15_2732 0.28 +0.9 2,884,272 + HP15_2732 0.31 -1.0 2,884,368 - HP15_2732 0.40 +0.4 2,884,368 - HP15_2732 0.40 +0.5 2,884,368 - HP15_2732 0.40 +0.1 2,884,437 + HP15_2732 0.45 +0.7 2,884,573 + HP15_2732 0.57 -0.4 2,884,671 + HP15_2732 0.65 -0.4 2,884,783 + HP15_2732 0.74 -0.0 2,884,791 - HP15_2732 0.75 -0.6 2,884,844 - HP15_2732 0.79 -0.0 2,884,899 + HP15_2732 0.84 -0.7 2,884,985 + -0.5 2,884,988 - +0.0 2,884,993 - -1.6 2,884,993 - -0.7 2,884,993 - +1.2 2,884,993 - -0.8 2,884,993 - -0.0 2,884,993 - +1.5 2,885,155 + -0.7 2,885,267 - +1.0 2,885,525 + HP15_2733 0.11 -0.3 2,885,611 - HP15_2733 0.16 +0.4 2,885,611 - HP15_2733 0.16 -0.3 2,885,615 + HP15_2733 0.16 +0.6 2,885,740 - HP15_2733 0.22 -0.6 2,885,835 - HP15_2733 0.26 -0.2 2,885,859 + HP15_2733 0.28 -0.1 2,885,931 + HP15_2733 0.31 -0.6 2,885,931 + HP15_2733 0.31 -1.5 2,885,931 + HP15_2733 0.31 -0.9 2,885,939 - HP15_2733 0.31 +0.6 2,885,939 - HP15_2733 0.31 -0.1 2,885,939 - HP15_2733 0.31 +0.6 2,885,985 + HP15_2733 0.34 +0.5 2,885,985 + HP15_2733 0.34 -1.5 2,886,017 - HP15_2733 0.35 +0.1 2,886,019 + HP15_2733 0.35 -3.1
Or see this region's nucleotide sequence