Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2719 and HP15_2720 are separated by 58 nucleotides HP15_2720 and HP15_2721 are separated by 152 nucleotides HP15_2721 and HP15_2722 are separated by 105 nucleotides
HP15_2719: HP15_2719 - transmembrane efflux protein, at 2,872,383 to 2,873,555
_2719
HP15_2720: HP15_2720 - protein-tyrosine phosphatase-like protein, at 2,873,614 to 2,874,126
_2720
HP15_2721: HP15_2721 - ribosome-associated GTPase, at 2,874,279 to 2,875,328
_2721
HP15_2722: HP15_2722 - polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein, at 2,875,434 to 2,876,081
_2722
Position (kb)
2874
2875
2876 Strain fitness (log2 ratio)
-1
0
1
2 at 2873.318 kb on + strand, within HP15_2719 at 2873.318 kb on + strand, within HP15_2719 at 2873.326 kb on - strand, within HP15_2719 at 2873.326 kb on - strand, within HP15_2719 at 2873.326 kb on - strand, within HP15_2719 at 2873.326 kb on - strand, within HP15_2719 at 2873.362 kb on - strand, within HP15_2719 at 2873.459 kb on - strand at 2873.521 kb on - strand at 2873.534 kb on + strand at 2873.591 kb on + strand at 2873.778 kb on - strand, within HP15_2720 at 2873.779 kb on - strand, within HP15_2720 at 2873.839 kb on - strand, within HP15_2720 at 2873.841 kb on + strand, within HP15_2720 at 2873.877 kb on - strand, within HP15_2720 at 2873.949 kb on + strand, within HP15_2720 at 2873.954 kb on + strand, within HP15_2720 at 2873.954 kb on + strand, within HP15_2720 at 2873.954 kb on + strand, within HP15_2720 at 2874.076 kb on + strand at 2874.076 kb on + strand at 2874.079 kb on - strand at 2874.087 kb on + strand at 2874.095 kb on - strand at 2874.264 kb on + strand at 2874.546 kb on + strand, within HP15_2721 at 2874.637 kb on - strand, within HP15_2721 at 2874.682 kb on + strand, within HP15_2721 at 2874.712 kb on + strand, within HP15_2721 at 2874.762 kb on - strand, within HP15_2721 at 2874.800 kb on + strand, within HP15_2721 at 2874.836 kb on + strand, within HP15_2721 at 2874.943 kb on - strand, within HP15_2721 at 2874.998 kb on + strand, within HP15_2721 at 2875.054 kb on - strand, within HP15_2721 at 2875.120 kb on - strand, within HP15_2721 at 2875.158 kb on + strand, within HP15_2721 at 2875.234 kb on - strand at 2875.301 kb on + strand at 2875.309 kb on - strand at 2875.390 kb on + strand at 2875.603 kb on + strand, within HP15_2722 at 2875.603 kb on + strand, within HP15_2722 at 2875.611 kb on - strand, within HP15_2722 at 2875.613 kb on - strand, within HP15_2722 at 2875.696 kb on - strand, within HP15_2722 at 2875.783 kb on + strand, within HP15_2722 at 2875.835 kb on + strand, within HP15_2722 at 2875.845 kb on + strand, within HP15_2722 at 2875.845 kb on + strand, within HP15_2722 at 2875.848 kb on - strand, within HP15_2722 at 2875.856 kb on + strand, within HP15_2722 at 2875.856 kb on + strand, within HP15_2722 at 2875.864 kb on - strand, within HP15_2722 at 2875.936 kb on + strand, within HP15_2722 at 2875.941 kb on + strand, within HP15_2722 at 2875.994 kb on - strand, within HP15_2722 at 2876.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 2,873,318 + HP15_2719 0.80 -1.0 2,873,318 + HP15_2719 0.80 -0.5 2,873,326 - HP15_2719 0.80 -0.7 2,873,326 - HP15_2719 0.80 +0.3 2,873,326 - HP15_2719 0.80 -0.7 2,873,326 - HP15_2719 0.80 +0.0 2,873,362 - HP15_2719 0.83 +0.6 2,873,459 - +0.7 2,873,521 - +0.3 2,873,534 + +0.4 2,873,591 + -1.1 2,873,778 - HP15_2720 0.32 -0.7 2,873,779 - HP15_2720 0.32 +0.3 2,873,839 - HP15_2720 0.44 +0.3 2,873,841 + HP15_2720 0.44 -1.1 2,873,877 - HP15_2720 0.51 -0.1 2,873,949 + HP15_2720 0.65 +2.0 2,873,954 + HP15_2720 0.66 -0.5 2,873,954 + HP15_2720 0.66 -1.4 2,873,954 + HP15_2720 0.66 +0.4 2,874,076 + -0.3 2,874,076 + +2.6 2,874,079 - +0.8 2,874,087 + +0.3 2,874,095 - -0.4 2,874,264 + -0.6 2,874,546 + HP15_2721 0.25 +1.1 2,874,637 - HP15_2721 0.34 -0.8 2,874,682 + HP15_2721 0.38 +0.4 2,874,712 + HP15_2721 0.41 +2.2 2,874,762 - HP15_2721 0.46 +1.9 2,874,800 + HP15_2721 0.50 -0.1 2,874,836 + HP15_2721 0.53 +2.1 2,874,943 - HP15_2721 0.63 -0.0 2,874,998 + HP15_2721 0.68 +0.6 2,875,054 - HP15_2721 0.74 +0.7 2,875,120 - HP15_2721 0.80 -0.7 2,875,158 + HP15_2721 0.84 +1.9 2,875,234 - +0.5 2,875,301 + -0.6 2,875,309 - -0.7 2,875,390 + +0.4 2,875,603 + HP15_2722 0.26 -0.6 2,875,603 + HP15_2722 0.26 -0.4 2,875,611 - HP15_2722 0.27 -0.3 2,875,613 - HP15_2722 0.28 -1.1 2,875,696 - HP15_2722 0.40 -0.7 2,875,783 + HP15_2722 0.54 -0.6 2,875,835 + HP15_2722 0.62 -0.3 2,875,845 + HP15_2722 0.63 -0.0 2,875,845 + HP15_2722 0.63 -1.4 2,875,848 - HP15_2722 0.64 +0.4 2,875,856 + HP15_2722 0.65 +0.1 2,875,856 + HP15_2722 0.65 -1.4 2,875,864 - HP15_2722 0.66 -0.1 2,875,936 + HP15_2722 0.77 -0.4 2,875,941 + HP15_2722 0.78 +0.1 2,875,994 - HP15_2722 0.86 -1.4 2,876,146 - +0.6
Or see this region's nucleotide sequence