Strain Fitness in Marinobacter adhaerens HP15 around HP15_2715

Experiment: m.b. Tetracycline 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2713 and HP15_2714 are separated by 54 nucleotidesHP15_2714 and HP15_2715 are separated by 76 nucleotidesHP15_2715 and HP15_2716 are separated by 161 nucleotides HP15_2713: HP15_2713 - permease, major facilitator superfamily MFS-1, at 2,865,227 to 2,866,386 _2713 HP15_2714: HP15_2714 - elongation factor P-like protein, at 2,866,441 to 2,867,007 _2714 HP15_2715: HP15_2715 - low specificity L-threonine aldolase, at 2,867,084 to 2,868,115 _2715 HP15_2716: HP15_2716 - lemA family domain protein, at 2,868,277 to 2,870,478 _2716 Position (kb) 2867 2868 2869Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2866.089 kb on - strand, within HP15_2713at 2866.112 kb on - strand, within HP15_2713at 2866.122 kb on + strand, within HP15_2713at 2866.122 kb on + strand, within HP15_2713at 2866.169 kb on + strand, within HP15_2713at 2866.192 kb on - strand, within HP15_2713at 2866.386 kb on + strandat 2866.386 kb on + strandat 2866.467 kb on + strandat 2866.475 kb on - strandat 2866.475 kb on - strandat 2866.555 kb on - strand, within HP15_2714at 2866.611 kb on + strand, within HP15_2714at 2866.728 kb on - strand, within HP15_2714at 2866.818 kb on + strand, within HP15_2714at 2866.836 kb on + strand, within HP15_2714at 2866.864 kb on + strand, within HP15_2714at 2866.920 kb on - strand, within HP15_2714at 2867.088 kb on - strandat 2867.166 kb on - strandat 2867.265 kb on - strand, within HP15_2715at 2867.503 kb on - strand, within HP15_2715at 2867.513 kb on + strand, within HP15_2715at 2867.521 kb on - strand, within HP15_2715at 2867.593 kb on - strand, within HP15_2715at 2867.643 kb on + strand, within HP15_2715at 2867.653 kb on + strand, within HP15_2715at 2867.661 kb on + strand, within HP15_2715at 2867.669 kb on - strand, within HP15_2715at 2867.685 kb on - strand, within HP15_2715at 2867.689 kb on + strand, within HP15_2715at 2867.689 kb on + strand, within HP15_2715at 2867.785 kb on - strand, within HP15_2715at 2867.868 kb on - strand, within HP15_2715at 2868.118 kb on - strandat 2868.178 kb on - strandat 2868.368 kb on + strandat 2868.435 kb on - strandat 2868.440 kb on + strandat 2868.480 kb on + strandat 2868.576 kb on - strand, within HP15_2716at 2868.625 kb on + strand, within HP15_2716at 2868.680 kb on + strand, within HP15_2716at 2868.698 kb on + strand, within HP15_2716at 2868.725 kb on + strand, within HP15_2716at 2868.733 kb on - strand, within HP15_2716at 2868.757 kb on + strand, within HP15_2716at 2868.765 kb on - strand, within HP15_2716at 2868.825 kb on - strand, within HP15_2716at 2868.912 kb on + strand, within HP15_2716at 2868.964 kb on - strand, within HP15_2716at 2868.979 kb on - strand, within HP15_2716at 2868.992 kb on - strand, within HP15_2716at 2869.010 kb on - strand, within HP15_2716

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml
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2,866,089 - HP15_2713 0.74 +0.4
2,866,112 - HP15_2713 0.76 +0.2
2,866,122 + HP15_2713 0.77 +0.4
2,866,122 + HP15_2713 0.77 +0.0
2,866,169 + HP15_2713 0.81 +0.6
2,866,192 - HP15_2713 0.83 +0.7
2,866,386 + +0.1
2,866,386 + -0.8
2,866,467 + +0.4
2,866,475 - -0.9
2,866,475 - +0.5
2,866,555 - HP15_2714 0.20 -0.3
2,866,611 + HP15_2714 0.30 -1.4
2,866,728 - HP15_2714 0.51 +1.0
2,866,818 + HP15_2714 0.66 +0.1
2,866,836 + HP15_2714 0.70 -0.0
2,866,864 + HP15_2714 0.75 +2.2
2,866,920 - HP15_2714 0.84 -0.7
2,867,088 - -0.1
2,867,166 - -0.0
2,867,265 - HP15_2715 0.18 +1.7
2,867,503 - HP15_2715 0.41 +0.5
2,867,513 + HP15_2715 0.42 +0.5
2,867,521 - HP15_2715 0.42 +1.4
2,867,593 - HP15_2715 0.49 +0.9
2,867,643 + HP15_2715 0.54 +0.9
2,867,653 + HP15_2715 0.55 -0.0
2,867,661 + HP15_2715 0.56 +0.3
2,867,669 - HP15_2715 0.57 +0.9
2,867,685 - HP15_2715 0.58 -0.9
2,867,689 + HP15_2715 0.59 +0.2
2,867,689 + HP15_2715 0.59 -0.4
2,867,785 - HP15_2715 0.68 +0.9
2,867,868 - HP15_2715 0.76 -0.1
2,868,118 - +1.0
2,868,178 - +0.3
2,868,368 + -1.3
2,868,435 - -0.1
2,868,440 + -0.3
2,868,480 + -1.4
2,868,576 - HP15_2716 0.14 -0.4
2,868,625 + HP15_2716 0.16 +0.4
2,868,680 + HP15_2716 0.18 -0.1
2,868,698 + HP15_2716 0.19 -3.2
2,868,725 + HP15_2716 0.20 +1.0
2,868,733 - HP15_2716 0.21 +0.6
2,868,757 + HP15_2716 0.22 -1.1
2,868,765 - HP15_2716 0.22 +0.8
2,868,825 - HP15_2716 0.25 -0.2
2,868,912 + HP15_2716 0.29 +0.6
2,868,964 - HP15_2716 0.31 +0.2
2,868,979 - HP15_2716 0.32 +0.5
2,868,992 - HP15_2716 0.32 +0.2
2,869,010 - HP15_2716 0.33 -0.2

Or see this region's nucleotide sequence