Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2713 and HP15_2714 are separated by 54 nucleotides HP15_2714 and HP15_2715 are separated by 76 nucleotides HP15_2715 and HP15_2716 are separated by 161 nucleotides
HP15_2713: HP15_2713 - permease, major facilitator superfamily MFS-1, at 2,865,227 to 2,866,386
_2713
HP15_2714: HP15_2714 - elongation factor P-like protein, at 2,866,441 to 2,867,007
_2714
HP15_2715: HP15_2715 - low specificity L-threonine aldolase, at 2,867,084 to 2,868,115
_2715
HP15_2716: HP15_2716 - lemA family domain protein, at 2,868,277 to 2,870,478
_2716
Position (kb)
2867
2868
2869 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2866.089 kb on - strand, within HP15_2713 at 2866.112 kb on - strand, within HP15_2713 at 2866.122 kb on + strand, within HP15_2713 at 2866.122 kb on + strand, within HP15_2713 at 2866.169 kb on + strand, within HP15_2713 at 2866.192 kb on - strand, within HP15_2713 at 2866.386 kb on + strand at 2866.386 kb on + strand at 2866.467 kb on + strand at 2866.475 kb on - strand at 2866.475 kb on - strand at 2866.555 kb on - strand, within HP15_2714 at 2866.611 kb on + strand, within HP15_2714 at 2866.728 kb on - strand, within HP15_2714 at 2866.818 kb on + strand, within HP15_2714 at 2866.836 kb on + strand, within HP15_2714 at 2866.864 kb on + strand, within HP15_2714 at 2866.920 kb on - strand, within HP15_2714 at 2867.088 kb on - strand at 2867.166 kb on - strand at 2867.265 kb on - strand, within HP15_2715 at 2867.503 kb on - strand, within HP15_2715 at 2867.513 kb on + strand, within HP15_2715 at 2867.521 kb on - strand, within HP15_2715 at 2867.593 kb on - strand, within HP15_2715 at 2867.643 kb on + strand, within HP15_2715 at 2867.653 kb on + strand, within HP15_2715 at 2867.661 kb on + strand, within HP15_2715 at 2867.669 kb on - strand, within HP15_2715 at 2867.685 kb on - strand, within HP15_2715 at 2867.689 kb on + strand, within HP15_2715 at 2867.689 kb on + strand, within HP15_2715 at 2867.785 kb on - strand, within HP15_2715 at 2867.868 kb on - strand, within HP15_2715 at 2868.118 kb on - strand at 2868.178 kb on - strand at 2868.368 kb on + strand at 2868.435 kb on - strand at 2868.440 kb on + strand at 2868.480 kb on + strand at 2868.576 kb on - strand, within HP15_2716 at 2868.625 kb on + strand, within HP15_2716 at 2868.680 kb on + strand, within HP15_2716 at 2868.698 kb on + strand, within HP15_2716 at 2868.725 kb on + strand, within HP15_2716 at 2868.733 kb on - strand, within HP15_2716 at 2868.757 kb on + strand, within HP15_2716 at 2868.765 kb on - strand, within HP15_2716 at 2868.825 kb on - strand, within HP15_2716 at 2868.912 kb on + strand, within HP15_2716 at 2868.964 kb on - strand, within HP15_2716 at 2868.979 kb on - strand, within HP15_2716 at 2868.992 kb on - strand, within HP15_2716 at 2869.010 kb on - strand, within HP15_2716
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 2,866,089 - HP15_2713 0.74 +0.4 2,866,112 - HP15_2713 0.76 +0.2 2,866,122 + HP15_2713 0.77 +0.4 2,866,122 + HP15_2713 0.77 +0.0 2,866,169 + HP15_2713 0.81 +0.6 2,866,192 - HP15_2713 0.83 +0.7 2,866,386 + +0.1 2,866,386 + -0.8 2,866,467 + +0.4 2,866,475 - -0.9 2,866,475 - +0.5 2,866,555 - HP15_2714 0.20 -0.3 2,866,611 + HP15_2714 0.30 -1.4 2,866,728 - HP15_2714 0.51 +1.0 2,866,818 + HP15_2714 0.66 +0.1 2,866,836 + HP15_2714 0.70 -0.0 2,866,864 + HP15_2714 0.75 +2.2 2,866,920 - HP15_2714 0.84 -0.7 2,867,088 - -0.1 2,867,166 - -0.0 2,867,265 - HP15_2715 0.18 +1.7 2,867,503 - HP15_2715 0.41 +0.5 2,867,513 + HP15_2715 0.42 +0.5 2,867,521 - HP15_2715 0.42 +1.4 2,867,593 - HP15_2715 0.49 +0.9 2,867,643 + HP15_2715 0.54 +0.9 2,867,653 + HP15_2715 0.55 -0.0 2,867,661 + HP15_2715 0.56 +0.3 2,867,669 - HP15_2715 0.57 +0.9 2,867,685 - HP15_2715 0.58 -0.9 2,867,689 + HP15_2715 0.59 +0.2 2,867,689 + HP15_2715 0.59 -0.4 2,867,785 - HP15_2715 0.68 +0.9 2,867,868 - HP15_2715 0.76 -0.1 2,868,118 - +1.0 2,868,178 - +0.3 2,868,368 + -1.3 2,868,435 - -0.1 2,868,440 + -0.3 2,868,480 + -1.4 2,868,576 - HP15_2716 0.14 -0.4 2,868,625 + HP15_2716 0.16 +0.4 2,868,680 + HP15_2716 0.18 -0.1 2,868,698 + HP15_2716 0.19 -3.2 2,868,725 + HP15_2716 0.20 +1.0 2,868,733 - HP15_2716 0.21 +0.6 2,868,757 + HP15_2716 0.22 -1.1 2,868,765 - HP15_2716 0.22 +0.8 2,868,825 - HP15_2716 0.25 -0.2 2,868,912 + HP15_2716 0.29 +0.6 2,868,964 - HP15_2716 0.31 +0.2 2,868,979 - HP15_2716 0.32 +0.5 2,868,992 - HP15_2716 0.32 +0.2 2,869,010 - HP15_2716 0.33 -0.2
Or see this region's nucleotide sequence