Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2584 and HP15_2585 overlap by 4 nucleotides HP15_2585 and HP15_2586 are separated by 41 nucleotides HP15_2586 and HP15_2587 are separated by 115 nucleotides HP15_2587 and HP15_2588 are separated by 41 nucleotides HP15_2588 and HP15_2589 are separated by 34 nucleotides HP15_2589 and HP15_2590 overlap by 4 nucleotides
HP15_2584: HP15_2584 - pH adaption potassium efflux system protein PhaE, at 2,735,382 to 2,735,870
_2584
HP15_2585: HP15_2585 - multiple resistance and pH regulation protein F, at 2,735,867 to 2,736,136
_2585
HP15_2586: HP15_2586 - monovalent cation/H+ antiporter subunit G, at 2,736,178 to 2,736,510
_2586
HP15_2587: HP15_2587 - monovalent cation/H+ antiporter subunit A, at 2,736,626 to 2,738,935
_2587
HP15_2588: HP15_2588 - Na+/H+ antiporter MnhB subunit-related protein, at 2,738,977 to 2,739,357
_2588
HP15_2589: HP15_2589 - NADH:ubiquinone/quinone oxidoreductase, chain 4L, at 2,739,392 to 2,739,739
_2589
HP15_2590: HP15_2590 - monovalent cation/H+ antiporter subunit D, at 2,739,736 to 2,741,250
_2590
Position (kb)
2736
2737
2738
2739 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2735.676 kb on - strand, within HP15_2584 at 2735.915 kb on - strand, within HP15_2585 at 2735.984 kb on + strand, within HP15_2585 at 2735.992 kb on - strand, within HP15_2585 at 2736.011 kb on + strand, within HP15_2585 at 2736.121 kb on - strand at 2736.131 kb on - strand at 2736.319 kb on - strand, within HP15_2586 at 2736.321 kb on - strand, within HP15_2586 at 2736.331 kb on + strand, within HP15_2586 at 2736.367 kb on - strand, within HP15_2586 at 2736.474 kb on - strand, within HP15_2586 at 2736.713 kb on + strand at 2736.713 kb on + strand at 2736.788 kb on + strand at 2736.857 kb on - strand, within HP15_2587 at 2736.862 kb on - strand, within HP15_2587 at 2736.891 kb on + strand, within HP15_2587 at 2736.891 kb on + strand, within HP15_2587 at 2737.122 kb on - strand, within HP15_2587 at 2737.183 kb on - strand, within HP15_2587 at 2737.272 kb on - strand, within HP15_2587 at 2737.369 kb on + strand, within HP15_2587 at 2737.377 kb on - strand, within HP15_2587 at 2737.511 kb on - strand, within HP15_2587 at 2737.540 kb on - strand, within HP15_2587 at 2737.546 kb on - strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.630 kb on - strand, within HP15_2587 at 2737.632 kb on - strand, within HP15_2587 at 2737.632 kb on - strand, within HP15_2587 at 2737.632 kb on - strand, within HP15_2587 at 2737.632 kb on - strand, within HP15_2587 at 2737.923 kb on - strand, within HP15_2587 at 2737.943 kb on - strand, within HP15_2587 at 2737.943 kb on - strand, within HP15_2587 at 2737.943 kb on - strand, within HP15_2587 at 2737.943 kb on - strand, within HP15_2587 at 2738.057 kb on + strand, within HP15_2587 at 2738.098 kb on - strand, within HP15_2587 at 2738.098 kb on - strand, within HP15_2587 at 2738.186 kb on + strand, within HP15_2587 at 2738.528 kb on - strand, within HP15_2587 at 2738.590 kb on + strand, within HP15_2587 at 2738.600 kb on - strand, within HP15_2587 at 2738.744 kb on - strand at 2738.781 kb on + strand at 2738.786 kb on + strand at 2738.794 kb on - strand at 2738.847 kb on - strand at 2738.867 kb on - strand at 2738.915 kb on + strand at 2739.050 kb on + strand, within HP15_2588 at 2739.076 kb on - strand, within HP15_2588 at 2739.207 kb on - strand, within HP15_2588 at 2739.207 kb on - strand, within HP15_2588 at 2739.232 kb on + strand, within HP15_2588 at 2739.254 kb on + strand, within HP15_2588 at 2739.302 kb on - strand, within HP15_2588 at 2739.316 kb on + strand, within HP15_2588 at 2739.406 kb on + strand at 2739.422 kb on - strand at 2739.499 kb on - strand, within HP15_2589 at 2739.615 kb on + strand, within HP15_2589 at 2739.676 kb on - strand, within HP15_2589 at 2739.699 kb on + strand, within HP15_2589 at 2739.792 kb on - strand at 2739.921 kb on + strand, within HP15_2590
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 2,735,676 - HP15_2584 0.60 -0.3 2,735,915 - HP15_2585 0.18 -0.5 2,735,984 + HP15_2585 0.43 -1.2 2,735,992 - HP15_2585 0.46 +2.0 2,736,011 + HP15_2585 0.53 +1.0 2,736,121 - -1.9 2,736,131 - +0.3 2,736,319 - HP15_2586 0.42 -1.3 2,736,321 - HP15_2586 0.43 +0.0 2,736,331 + HP15_2586 0.46 +0.3 2,736,367 - HP15_2586 0.57 -0.3 2,736,474 - HP15_2586 0.89 +1.6 2,736,713 + +0.2 2,736,713 + -0.2 2,736,788 + +1.0 2,736,857 - HP15_2587 0.10 +1.8 2,736,862 - HP15_2587 0.10 +0.5 2,736,891 + HP15_2587 0.11 -0.5 2,736,891 + HP15_2587 0.11 -1.1 2,737,122 - HP15_2587 0.21 -1.5 2,737,183 - HP15_2587 0.24 +0.7 2,737,272 - HP15_2587 0.28 +0.2 2,737,369 + HP15_2587 0.32 -0.8 2,737,377 - HP15_2587 0.33 -0.5 2,737,511 - HP15_2587 0.38 -1.4 2,737,540 - HP15_2587 0.40 -1.3 2,737,546 - HP15_2587 0.40 -1.2 2,737,624 + HP15_2587 0.43 +0.4 2,737,624 + HP15_2587 0.43 -0.3 2,737,624 + HP15_2587 0.43 -0.3 2,737,624 + HP15_2587 0.43 +0.6 2,737,624 + HP15_2587 0.43 +0.7 2,737,630 - HP15_2587 0.43 -0.2 2,737,632 - HP15_2587 0.44 -1.2 2,737,632 - HP15_2587 0.44 -0.4 2,737,632 - HP15_2587 0.44 -1.3 2,737,632 - HP15_2587 0.44 +0.1 2,737,923 - HP15_2587 0.56 -0.3 2,737,943 - HP15_2587 0.57 -0.9 2,737,943 - HP15_2587 0.57 +0.7 2,737,943 - HP15_2587 0.57 +0.5 2,737,943 - HP15_2587 0.57 -0.8 2,738,057 + HP15_2587 0.62 +0.2 2,738,098 - HP15_2587 0.64 -0.5 2,738,098 - HP15_2587 0.64 +2.5 2,738,186 + HP15_2587 0.68 -1.3 2,738,528 - HP15_2587 0.82 -0.4 2,738,590 + HP15_2587 0.85 +0.8 2,738,600 - HP15_2587 0.85 +0.6 2,738,744 - +1.1 2,738,781 + -0.1 2,738,786 + -0.8 2,738,794 - -1.4 2,738,847 - +1.7 2,738,867 - -0.7 2,738,915 + +0.2 2,739,050 + HP15_2588 0.19 -0.7 2,739,076 - HP15_2588 0.26 +1.2 2,739,207 - HP15_2588 0.60 -0.3 2,739,207 - HP15_2588 0.60 +2.8 2,739,232 + HP15_2588 0.67 +0.5 2,739,254 + HP15_2588 0.73 +0.6 2,739,302 - HP15_2588 0.85 +0.3 2,739,316 + HP15_2588 0.89 +1.0 2,739,406 + +0.4 2,739,422 - +0.1 2,739,499 - HP15_2589 0.31 -0.6 2,739,615 + HP15_2589 0.64 +0.7 2,739,676 - HP15_2589 0.82 +1.5 2,739,699 + HP15_2589 0.88 +0.1 2,739,792 - +0.5 2,739,921 + HP15_2590 0.12 -0.5
Or see this region's nucleotide sequence