Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_253 and HP15_254 are separated by 12 nucleotides HP15_254 and HP15_255 are separated by 260 nucleotides HP15_255 and HP15_256 are separated by 7 nucleotides
HP15_253: HP15_253 - extracellular solute-binding protein, family 3, at 241,441 to 244,149
_253
HP15_254: HP15_254 - conserved hypothetical protein, at 244,162 to 244,485
_254
HP15_255: HP15_255 - conserved hypothetical protein, at 244,746 to 245,351
_255
HP15_256: HP15_256 - serine protease, at 245,359 to 247,575
_256
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 243.810 kb on + strand, within HP15_253 at 243.813 kb on - strand, within HP15_253 at 243.823 kb on - strand, within HP15_253 at 243.956 kb on + strand at 243.956 kb on - strand at 244.040 kb on + strand at 244.110 kb on + strand at 244.111 kb on + strand at 244.111 kb on + strand at 244.111 kb on + strand at 244.199 kb on + strand, within HP15_254 at 244.230 kb on - strand, within HP15_254 at 244.270 kb on - strand, within HP15_254 at 244.286 kb on + strand, within HP15_254 at 244.286 kb on + strand, within HP15_254 at 244.293 kb on - strand, within HP15_254 at 244.294 kb on - strand, within HP15_254 at 244.296 kb on + strand, within HP15_254 at 244.366 kb on + strand, within HP15_254 at 244.403 kb on + strand, within HP15_254 at 244.715 kb on - strand at 244.779 kb on + strand at 244.823 kb on + strand, within HP15_255 at 244.823 kb on + strand, within HP15_255 at 244.831 kb on - strand, within HP15_255 at 245.030 kb on - strand, within HP15_255 at 245.030 kb on - strand, within HP15_255 at 245.162 kb on - strand, within HP15_255 at 245.176 kb on + strand, within HP15_255 at 245.184 kb on - strand, within HP15_255 at 245.224 kb on + strand, within HP15_255 at 245.232 kb on - strand, within HP15_255 at 245.233 kb on + strand, within HP15_255 at 245.247 kb on - strand, within HP15_255 at 245.313 kb on - strand at 245.367 kb on + strand at 245.398 kb on - strand at 245.398 kb on - strand at 245.433 kb on + strand at 245.448 kb on - strand at 245.459 kb on - strand at 245.459 kb on - strand at 245.470 kb on - strand at 245.490 kb on + strand at 245.600 kb on - strand, within HP15_256 at 245.825 kb on - strand, within HP15_256 at 245.833 kb on + strand, within HP15_256 at 245.923 kb on - strand, within HP15_256 at 246.207 kb on - strand, within HP15_256 at 246.223 kb on + strand, within HP15_256 at 246.230 kb on - strand, within HP15_256 at 246.231 kb on - strand, within HP15_256 at 246.306 kb on - strand, within HP15_256 at 246.338 kb on - strand, within HP15_256
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 243,810 + HP15_253 0.87 +0.0 243,813 - HP15_253 0.88 -0.9 243,823 - HP15_253 0.88 -1.4 243,956 + -2.6 243,956 - -2.6 244,040 + -2.3 244,110 + +1.0 244,111 + +0.7 244,111 + -0.3 244,111 + +0.7 244,199 + HP15_254 0.11 +0.6 244,230 - HP15_254 0.21 +1.0 244,270 - HP15_254 0.33 -0.7 244,286 + HP15_254 0.38 +0.1 244,286 + HP15_254 0.38 +1.2 244,293 - HP15_254 0.40 +1.9 244,294 - HP15_254 0.41 -2.3 244,296 + HP15_254 0.41 +0.7 244,366 + HP15_254 0.63 +1.1 244,403 + HP15_254 0.74 -0.5 244,715 - +1.3 244,779 + +0.9 244,823 + HP15_255 0.13 +1.6 244,823 + HP15_255 0.13 +2.0 244,831 - HP15_255 0.14 -1.1 245,030 - HP15_255 0.47 -0.1 245,030 - HP15_255 0.47 +1.0 245,162 - HP15_255 0.69 +2.9 245,176 + HP15_255 0.71 +2.7 245,184 - HP15_255 0.72 +0.6 245,224 + HP15_255 0.79 -0.7 245,232 - HP15_255 0.80 -2.1 245,233 + HP15_255 0.80 -0.7 245,247 - HP15_255 0.83 +1.0 245,313 - +0.7 245,367 + +0.3 245,398 - +0.6 245,398 - +1.8 245,433 + +2.0 245,448 - +0.1 245,459 - -0.3 245,459 - +3.6 245,470 - +1.6 245,490 + -0.1 245,600 - HP15_256 0.11 +2.9 245,825 - HP15_256 0.21 -2.6 245,833 + HP15_256 0.21 +0.7 245,923 - HP15_256 0.25 +0.8 246,207 - HP15_256 0.38 +1.5 246,223 + HP15_256 0.39 +0.8 246,230 - HP15_256 0.39 +1.0 246,231 - HP15_256 0.39 +1.1 246,306 - HP15_256 0.43 +1.3 246,338 - HP15_256 0.44 -0.7
Or see this region's nucleotide sequence