Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2479 and HP15_2480 are separated by 197 nucleotides HP15_2480 and HP15_2481 are separated by 22 nucleotides HP15_2481 and HP15_2482 are separated by 51 nucleotides
HP15_2479: HP15_2479 - acyl-CoA dehydrogenase family protein, at 2,619,999 to 2,621,870
_2479
HP15_2480: HP15_2480 - conserved hypothetical protein, at 2,622,068 to 2,622,736
_2480
HP15_2481: HP15_2481 - protein of unknown function domain protein, at 2,622,759 to 2,623,004
_2481
HP15_2482: HP15_2482 - dethiobiotin synthetase, at 2,623,056 to 2,623,748
_2482
Position (kb)
2622
2623 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2621.103 kb on - strand, within HP15_2479 at 2621.175 kb on + strand, within HP15_2479 at 2621.182 kb on + strand, within HP15_2479 at 2621.183 kb on - strand, within HP15_2479 at 2621.206 kb on + strand, within HP15_2479 at 2621.257 kb on + strand, within HP15_2479 at 2621.337 kb on - strand, within HP15_2479 at 2621.337 kb on - strand, within HP15_2479 at 2621.381 kb on + strand, within HP15_2479 at 2621.406 kb on + strand, within HP15_2479 at 2621.414 kb on - strand, within HP15_2479 at 2621.478 kb on + strand, within HP15_2479 at 2621.494 kb on - strand, within HP15_2479 at 2621.505 kb on - strand, within HP15_2479 at 2621.722 kb on + strand at 2621.722 kb on + strand at 2621.730 kb on - strand at 2621.782 kb on + strand at 2621.782 kb on + strand at 2621.802 kb on - strand at 2621.852 kb on - strand at 2621.852 kb on - strand at 2621.979 kb on - strand at 2622.000 kb on + strand at 2622.079 kb on - strand at 2622.079 kb on - strand at 2622.126 kb on - strand at 2622.134 kb on + strand at 2622.196 kb on + strand, within HP15_2480 at 2622.196 kb on + strand, within HP15_2480 at 2622.204 kb on - strand, within HP15_2480 at 2622.334 kb on - strand, within HP15_2480 at 2622.343 kb on + strand, within HP15_2480 at 2622.466 kb on - strand, within HP15_2480 at 2622.506 kb on + strand, within HP15_2480 at 2622.521 kb on + strand, within HP15_2480 at 2622.706 kb on + strand at 2623.052 kb on - strand at 2623.141 kb on - strand, within HP15_2482 at 2623.191 kb on + strand, within HP15_2482 at 2623.272 kb on - strand, within HP15_2482 at 2623.272 kb on - strand, within HP15_2482 at 2623.393 kb on + strand, within HP15_2482 at 2623.459 kb on + strand, within HP15_2482 at 2623.467 kb on - strand, within HP15_2482 at 2623.475 kb on - strand, within HP15_2482 at 2623.563 kb on - strand, within HP15_2482 at 2623.571 kb on + strand, within HP15_2482 at 2623.579 kb on - strand, within HP15_2482 at 2623.579 kb on - strand, within HP15_2482 at 2623.662 kb on - strand, within HP15_2482
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 2,621,103 - HP15_2479 0.59 -0.3 2,621,175 + HP15_2479 0.63 -0.7 2,621,182 + HP15_2479 0.63 -2.2 2,621,183 - HP15_2479 0.63 -0.8 2,621,206 + HP15_2479 0.64 -2.0 2,621,257 + HP15_2479 0.67 +0.1 2,621,337 - HP15_2479 0.71 -0.2 2,621,337 - HP15_2479 0.71 -1.4 2,621,381 + HP15_2479 0.74 -1.1 2,621,406 + HP15_2479 0.75 +1.3 2,621,414 - HP15_2479 0.76 +1.3 2,621,478 + HP15_2479 0.79 +0.3 2,621,494 - HP15_2479 0.80 +2.5 2,621,505 - HP15_2479 0.80 -0.9 2,621,722 + -0.5 2,621,722 + -0.8 2,621,730 - +0.0 2,621,782 + +0.6 2,621,782 + -0.8 2,621,802 - +0.6 2,621,852 - -0.2 2,621,852 - +0.4 2,621,979 - -0.6 2,622,000 + -0.1 2,622,079 - -0.8 2,622,079 - +0.2 2,622,126 - +0.7 2,622,134 + +2.1 2,622,196 + HP15_2480 0.19 +0.4 2,622,196 + HP15_2480 0.19 +0.0 2,622,204 - HP15_2480 0.20 +0.6 2,622,334 - HP15_2480 0.40 -1.6 2,622,343 + HP15_2480 0.41 +0.2 2,622,466 - HP15_2480 0.59 +0.9 2,622,506 + HP15_2480 0.65 +1.5 2,622,521 + HP15_2480 0.68 +0.9 2,622,706 + +1.7 2,623,052 - +0.1 2,623,141 - HP15_2482 0.12 -0.2 2,623,191 + HP15_2482 0.19 -1.6 2,623,272 - HP15_2482 0.31 -0.4 2,623,272 - HP15_2482 0.31 +1.7 2,623,393 + HP15_2482 0.49 -0.2 2,623,459 + HP15_2482 0.58 +0.1 2,623,467 - HP15_2482 0.59 -0.3 2,623,475 - HP15_2482 0.60 +0.1 2,623,563 - HP15_2482 0.73 +0.8 2,623,571 + HP15_2482 0.74 -1.0 2,623,579 - HP15_2482 0.75 +2.0 2,623,579 - HP15_2482 0.75 -0.1 2,623,662 - HP15_2482 0.87 +1.1
Or see this region's nucleotide sequence