Strain Fitness in Marinobacter adhaerens HP15 around HP15_2292

Experiment: m.b. Tetracycline 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2290 and HP15_2291 are separated by 26 nucleotidesHP15_2291 and HP15_2292 are separated by 67 nucleotidesHP15_2292 and HP15_2293 are separated by 133 nucleotidesHP15_2293 and HP15_2294 overlap by 8 nucleotides HP15_2290: HP15_2290 - type IV-A pilus assembly ATPase PilB, at 2,411,528 to 2,413,810 _2290 HP15_2291: HP15_2291 - conserved hypothetical protein, at 2,413,837 to 2,414,229 _2291 HP15_2292: HP15_2292 - purine-binding chemotaxis protein CheW, at 2,414,297 to 2,414,785 _2292 HP15_2293: HP15_2293 - protein containing CheW-like domain, at 2,414,919 to 2,415,728 _2293 HP15_2294: HP15_2294 - chromosome partitioning protein ParA, at 2,415,721 to 2,416,542 _2294 Position (kb) 2414 2415Strain fitness (log2 ratio) -2 -1 0 1 2at 2413.317 kb on - strand, within HP15_2290at 2413.363 kb on + strand, within HP15_2290at 2413.371 kb on - strand, within HP15_2290at 2413.536 kb on + strand, within HP15_2290at 2413.590 kb on + strandat 2413.594 kb on - strandat 2413.743 kb on - strandat 2413.872 kb on + strandat 2413.875 kb on - strandat 2413.941 kb on + strand, within HP15_2291at 2413.941 kb on + strand, within HP15_2291at 2414.054 kb on - strand, within HP15_2291at 2414.088 kb on + strand, within HP15_2291at 2414.094 kb on + strand, within HP15_2291at 2414.102 kb on - strand, within HP15_2291at 2414.120 kb on + strand, within HP15_2291at 2414.213 kb on - strandat 2414.456 kb on + strand, within HP15_2292at 2414.673 kb on + strand, within HP15_2292at 2414.705 kb on - strand, within HP15_2292at 2414.729 kb on + strand, within HP15_2292at 2414.748 kb on + strandat 2414.853 kb on + strandat 2414.896 kb on - strandat 2414.930 kb on - strandat 2414.966 kb on + strandat 2414.997 kb on + strandat 2415.082 kb on - strand, within HP15_2293at 2415.089 kb on - strand, within HP15_2293at 2415.092 kb on + strand, within HP15_2293at 2415.186 kb on - strand, within HP15_2293at 2415.186 kb on - strand, within HP15_2293at 2415.256 kb on - strand, within HP15_2293at 2415.308 kb on + strand, within HP15_2293at 2415.368 kb on + strand, within HP15_2293at 2415.376 kb on - strand, within HP15_2293at 2415.515 kb on + strand, within HP15_2293at 2415.601 kb on - strand, within HP15_2293at 2415.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml
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2,413,317 - HP15_2290 0.78 -0.0
2,413,363 + HP15_2290 0.80 +0.1
2,413,371 - HP15_2290 0.81 +0.9
2,413,536 + HP15_2290 0.88 +0.4
2,413,590 + +0.3
2,413,594 - +1.2
2,413,743 - +0.2
2,413,872 + +2.2
2,413,875 - -2.1
2,413,941 + HP15_2291 0.26 +0.4
2,413,941 + HP15_2291 0.26 +0.3
2,414,054 - HP15_2291 0.55 +1.2
2,414,088 + HP15_2291 0.64 +2.2
2,414,094 + HP15_2291 0.65 +0.4
2,414,102 - HP15_2291 0.67 +0.8
2,414,120 + HP15_2291 0.72 -0.5
2,414,213 - +1.4
2,414,456 + HP15_2292 0.33 +2.3
2,414,673 + HP15_2292 0.77 +1.3
2,414,705 - HP15_2292 0.83 +1.1
2,414,729 + HP15_2292 0.88 +1.8
2,414,748 + +1.4
2,414,853 + +0.6
2,414,896 - +1.4
2,414,930 - +1.1
2,414,966 + +0.7
2,414,997 + +2.1
2,415,082 - HP15_2293 0.20 +1.0
2,415,089 - HP15_2293 0.21 +1.9
2,415,092 + HP15_2293 0.21 +2.0
2,415,186 - HP15_2293 0.33 +0.6
2,415,186 - HP15_2293 0.33 -0.1
2,415,256 - HP15_2293 0.42 -0.7
2,415,308 + HP15_2293 0.48 +1.3
2,415,368 + HP15_2293 0.55 +1.2
2,415,376 - HP15_2293 0.56 -0.3
2,415,515 + HP15_2293 0.74 +1.4
2,415,601 - HP15_2293 0.84 -1.1
2,415,738 + -0.1

Or see this region's nucleotide sequence