Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2158 and HP15_2159 are separated by 117 nucleotides HP15_2159 and HP15_2160 overlap by 4 nucleotides HP15_2160 and HP15_2161 are separated by 11 nucleotides
HP15_2158: HP15_2158 - ABC-type sugar transport system, periplasmic component, at 2,265,504 to 2,267,246
_2158
HP15_2159: HP15_2159 - hypothetical protein, at 2,267,364 to 2,267,471
_2159
HP15_2160: HP15_2160 - transmembrane protein, at 2,267,468 to 2,267,743
_2160
HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564
_2161
Position (kb)
2267
2268 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2266.372 kb on - strand, within HP15_2158 at 2266.407 kb on - strand, within HP15_2158 at 2266.421 kb on - strand, within HP15_2158 at 2266.529 kb on + strand, within HP15_2158 at 2266.542 kb on + strand, within HP15_2158 at 2266.580 kb on - strand, within HP15_2158 at 2266.585 kb on + strand, within HP15_2158 at 2266.597 kb on + strand, within HP15_2158 at 2266.606 kb on + strand, within HP15_2158 at 2266.657 kb on + strand, within HP15_2158 at 2266.721 kb on + strand, within HP15_2158 at 2266.721 kb on + strand, within HP15_2158 at 2266.814 kb on - strand, within HP15_2158 at 2266.838 kb on + strand, within HP15_2158 at 2267.089 kb on + strand at 2267.097 kb on - strand at 2267.119 kb on + strand at 2267.161 kb on + strand at 2267.210 kb on + strand at 2267.247 kb on + strand at 2267.571 kb on + strand, within HP15_2160 at 2267.640 kb on + strand, within HP15_2160 at 2267.695 kb on + strand, within HP15_2160 at 2267.764 kb on + strand at 2267.801 kb on + strand at 2267.877 kb on + strand, within HP15_2161 at 2267.954 kb on + strand, within HP15_2161 at 2268.119 kb on + strand, within HP15_2161 at 2268.272 kb on + strand, within HP15_2161 at 2268.399 kb on - strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 2,266,372 - HP15_2158 0.50 +0.2 2,266,407 - HP15_2158 0.52 +0.1 2,266,421 - HP15_2158 0.53 -0.0 2,266,529 + HP15_2158 0.59 +1.4 2,266,542 + HP15_2158 0.60 +0.8 2,266,580 - HP15_2158 0.62 +0.3 2,266,585 + HP15_2158 0.62 -0.0 2,266,597 + HP15_2158 0.63 -0.2 2,266,606 + HP15_2158 0.63 -0.7 2,266,657 + HP15_2158 0.66 +0.8 2,266,721 + HP15_2158 0.70 -0.6 2,266,721 + HP15_2158 0.70 +0.0 2,266,814 - HP15_2158 0.75 +0.8 2,266,838 + HP15_2158 0.77 +1.7 2,267,089 + +0.0 2,267,097 - -0.5 2,267,119 + -0.2 2,267,161 + +0.6 2,267,210 + +0.2 2,267,247 + +2.4 2,267,571 + HP15_2160 0.37 +2.8 2,267,640 + HP15_2160 0.62 +0.5 2,267,695 + HP15_2160 0.82 +0.7 2,267,764 + +0.3 2,267,801 + +0.3 2,267,877 + HP15_2161 0.15 +2.9 2,267,954 + HP15_2161 0.25 +1.0 2,268,119 + HP15_2161 0.45 +1.5 2,268,272 + HP15_2161 0.64 -0.5 2,268,399 - HP15_2161 0.80 -1.4 2,268,438 + HP15_2161 0.84 -0.1 2,268,438 + HP15_2161 0.84 +0.9 2,268,438 + HP15_2161 0.84 +0.6 2,268,438 + HP15_2161 0.84 -1.4 2,268,446 - HP15_2161 0.85 -1.4 2,268,446 - HP15_2161 0.85 -0.6
Or see this region's nucleotide sequence