Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1939 and HP15_1940 overlap by 14 nucleotides HP15_1940 and HP15_1941 are separated by 30 nucleotides
HP15_1939: HP15_1939 - glycosyl transferase, group 1, at 2,058,085 to 2,060,025
_1939
HP15_1940: HP15_1940 - conserved hypothetical protein, at 2,060,012 to 2,060,410
_1940
HP15_1941: HP15_1941 - alcohol dehydrogenase zinc-binding domain protein, at 2,060,441 to 2,061,448
_1941
Position (kb)
2060
2061 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2059.040 kb on - strand, within HP15_1939 at 2059.040 kb on - strand, within HP15_1939 at 2059.061 kb on - strand, within HP15_1939 at 2059.214 kb on + strand, within HP15_1939 at 2059.292 kb on + strand, within HP15_1939 at 2059.524 kb on - strand, within HP15_1939 at 2059.545 kb on - strand, within HP15_1939 at 2059.684 kb on - strand, within HP15_1939 at 2059.918 kb on + strand at 2059.958 kb on + strand at 2060.089 kb on - strand, within HP15_1940 at 2060.099 kb on - strand, within HP15_1940 at 2060.274 kb on + strand, within HP15_1940 at 2060.459 kb on + strand at 2060.563 kb on - strand, within HP15_1941 at 2060.566 kb on + strand, within HP15_1941 at 2060.628 kb on - strand, within HP15_1941 at 2060.678 kb on + strand, within HP15_1941 at 2060.704 kb on - strand, within HP15_1941 at 2060.769 kb on + strand, within HP15_1941 at 2060.829 kb on - strand, within HP15_1941 at 2060.913 kb on - strand, within HP15_1941 at 2060.988 kb on + strand, within HP15_1941 at 2061.012 kb on + strand, within HP15_1941 at 2061.117 kb on - strand, within HP15_1941 at 2061.182 kb on + strand, within HP15_1941 at 2061.294 kb on + strand, within HP15_1941 at 2061.302 kb on - strand, within HP15_1941 at 2061.313 kb on - strand, within HP15_1941 at 2061.353 kb on - strand at 2061.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 2,059,040 - HP15_1939 0.49 -1.4 2,059,040 - HP15_1939 0.49 +0.2 2,059,061 - HP15_1939 0.50 -0.7 2,059,214 + HP15_1939 0.58 +0.1 2,059,292 + HP15_1939 0.62 +0.9 2,059,524 - HP15_1939 0.74 +0.3 2,059,545 - HP15_1939 0.75 -0.6 2,059,684 - HP15_1939 0.82 -0.1 2,059,918 + -0.1 2,059,958 + +1.9 2,060,089 - HP15_1940 0.19 +0.0 2,060,099 - HP15_1940 0.22 -1.7 2,060,274 + HP15_1940 0.66 -0.4 2,060,459 + +1.4 2,060,563 - HP15_1941 0.12 -0.4 2,060,566 + HP15_1941 0.12 +0.1 2,060,628 - HP15_1941 0.19 +1.1 2,060,678 + HP15_1941 0.24 +0.2 2,060,704 - HP15_1941 0.26 +0.7 2,060,769 + HP15_1941 0.33 +1.4 2,060,829 - HP15_1941 0.38 +0.5 2,060,913 - HP15_1941 0.47 -0.8 2,060,988 + HP15_1941 0.54 +0.4 2,061,012 + HP15_1941 0.57 -1.0 2,061,117 - HP15_1941 0.67 +0.3 2,061,182 + HP15_1941 0.74 +2.4 2,061,294 + HP15_1941 0.85 -3.0 2,061,302 - HP15_1941 0.85 -1.1 2,061,313 - HP15_1941 0.87 +0.7 2,061,353 - +0.0 2,061,360 - -0.9
Or see this region's nucleotide sequence