Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1885 and HP15_1886 are separated by 348 nucleotides HP15_1886 and HP15_1887 are separated by 241 nucleotides
HP15_1885: HP15_1885 - DNA polymerase III subunits gamma and tau, at 1,988,426 to 1,990,378
_1885
HP15_1886: HP15_1886 - oxidoreductase, 2OG-Fe(II) oxygenase family protein, at 1,990,727 to 1,991,482
_1886
HP15_1887: HP15_1887 - aldose 1-epimerase family protein, at 1,991,724 to 1,992,524
_1887
Position (kb)
1990
1991
1992 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1990.412 kb on - strand at 1990.468 kb on + strand at 1990.981 kb on + strand, within HP15_1886 at 1990.981 kb on + strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.991 kb on + strand, within HP15_1886 at 1991.048 kb on - strand, within HP15_1886 at 1991.185 kb on + strand, within HP15_1886 at 1991.301 kb on - strand, within HP15_1886 at 1991.325 kb on + strand, within HP15_1886 at 1991.331 kb on - strand, within HP15_1886 at 1991.403 kb on - strand, within HP15_1886 at 1991.429 kb on + strand at 1991.597 kb on + strand at 1991.640 kb on - strand at 1991.643 kb on + strand at 1991.761 kb on - strand at 1991.761 kb on - strand at 1991.799 kb on + strand at 1991.804 kb on + strand, within HP15_1887 at 1991.846 kb on - strand, within HP15_1887 at 1991.907 kb on + strand, within HP15_1887 at 1991.955 kb on + strand, within HP15_1887 at 1991.986 kb on + strand, within HP15_1887 at 1991.992 kb on + strand, within HP15_1887 at 1992.028 kb on - strand, within HP15_1887 at 1992.036 kb on + strand, within HP15_1887 at 1992.037 kb on + strand, within HP15_1887 at 1992.101 kb on + strand, within HP15_1887 at 1992.114 kb on + strand, within HP15_1887 at 1992.129 kb on - strand, within HP15_1887 at 1992.143 kb on - strand, within HP15_1887 at 1992.165 kb on + strand, within HP15_1887 at 1992.173 kb on - strand, within HP15_1887 at 1992.244 kb on + strand, within HP15_1887 at 1992.249 kb on + strand, within HP15_1887 at 1992.254 kb on - strand, within HP15_1887 at 1992.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 1,990,412 - +1.2 1,990,468 + -1.2 1,990,981 + HP15_1886 0.34 +1.2 1,990,981 + HP15_1886 0.34 -0.7 1,990,989 - HP15_1886 0.35 -0.1 1,990,989 - HP15_1886 0.35 +0.2 1,990,989 - HP15_1886 0.35 -0.1 1,990,991 + HP15_1886 0.35 -0.1 1,991,048 - HP15_1886 0.42 +1.3 1,991,185 + HP15_1886 0.61 +2.5 1,991,301 - HP15_1886 0.76 +1.3 1,991,325 + HP15_1886 0.79 +0.7 1,991,331 - HP15_1886 0.80 +3.1 1,991,403 - HP15_1886 0.89 +0.5 1,991,429 + -0.5 1,991,597 + -3.1 1,991,640 - -0.8 1,991,643 + +1.1 1,991,761 - +1.1 1,991,761 - +0.1 1,991,799 + +0.2 1,991,804 + HP15_1887 0.10 -0.9 1,991,846 - HP15_1887 0.15 +0.7 1,991,907 + HP15_1887 0.23 -1.1 1,991,955 + HP15_1887 0.29 +0.1 1,991,986 + HP15_1887 0.33 -2.5 1,991,992 + HP15_1887 0.33 +0.6 1,992,028 - HP15_1887 0.38 +0.7 1,992,036 + HP15_1887 0.39 +0.6 1,992,037 + HP15_1887 0.39 -2.8 1,992,101 + HP15_1887 0.47 -0.5 1,992,114 + HP15_1887 0.49 +0.9 1,992,129 - HP15_1887 0.51 -0.5 1,992,143 - HP15_1887 0.52 -1.5 1,992,165 + HP15_1887 0.55 +0.3 1,992,173 - HP15_1887 0.56 +1.0 1,992,244 + HP15_1887 0.65 +0.3 1,992,249 + HP15_1887 0.66 -1.1 1,992,254 - HP15_1887 0.66 +0.3 1,992,470 + +0.6
Or see this region's nucleotide sequence