Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1862 and HP15_1863 are separated by 150 nucleotides HP15_1863 and HP15_1864 are separated by 123 nucleotides
HP15_1862: HP15_1862 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,964,668 to 1,965,789
_1862
HP15_1863: HP15_1863 - RNA helicase, ATP-dependent DEAH box, HrpA type, at 1,965,940 to 1,969,875
_1863
HP15_1864: HP15_1864 - acyl-CoA synthase, at 1,969,999 to 1,971,681
_1864
Position (kb)
1965
1966
1967
1968
1969
1970 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1965.128 kb on + strand, within HP15_1862 at 1965.311 kb on - strand, within HP15_1862 at 1965.311 kb on - strand, within HP15_1862 at 1965.416 kb on - strand, within HP15_1862 at 1965.506 kb on + strand, within HP15_1862 at 1965.683 kb on + strand at 1965.691 kb on - strand at 1965.701 kb on - strand at 1965.713 kb on + strand at 1965.762 kb on - strand at 1965.808 kb on - strand at 1966.079 kb on - strand at 1966.079 kb on - strand at 1966.128 kb on + strand at 1966.136 kb on - strand at 1966.136 kb on - strand at 1966.208 kb on - strand at 1966.367 kb on + strand, within HP15_1863 at 1966.388 kb on + strand, within HP15_1863 at 1966.438 kb on + strand, within HP15_1863 at 1966.454 kb on - strand, within HP15_1863 at 1966.568 kb on - strand, within HP15_1863 at 1966.673 kb on - strand, within HP15_1863 at 1966.806 kb on - strand, within HP15_1863 at 1966.894 kb on - strand, within HP15_1863 at 1966.939 kb on - strand, within HP15_1863 at 1966.979 kb on + strand, within HP15_1863 at 1967.111 kb on + strand, within HP15_1863 at 1967.119 kb on - strand, within HP15_1863 at 1967.123 kb on + strand, within HP15_1863 at 1967.131 kb on - strand, within HP15_1863 at 1967.141 kb on - strand, within HP15_1863 at 1967.155 kb on - strand, within HP15_1863 at 1967.178 kb on + strand, within HP15_1863 at 1967.231 kb on - strand, within HP15_1863 at 1967.303 kb on + strand, within HP15_1863 at 1967.311 kb on - strand, within HP15_1863 at 1967.384 kb on + strand, within HP15_1863 at 1967.583 kb on + strand, within HP15_1863 at 1967.693 kb on - strand, within HP15_1863 at 1967.695 kb on + strand, within HP15_1863 at 1967.730 kb on + strand, within HP15_1863 at 1967.730 kb on + strand, within HP15_1863 at 1967.738 kb on - strand, within HP15_1863 at 1967.887 kb on + strand, within HP15_1863 at 1967.887 kb on + strand, within HP15_1863 at 1967.895 kb on - strand, within HP15_1863 at 1967.958 kb on - strand, within HP15_1863 at 1968.246 kb on - strand, within HP15_1863 at 1968.261 kb on + strand, within HP15_1863 at 1968.506 kb on - strand, within HP15_1863 at 1968.641 kb on + strand, within HP15_1863 at 1968.646 kb on - strand, within HP15_1863 at 1968.656 kb on - strand, within HP15_1863 at 1968.883 kb on + strand, within HP15_1863 at 1969.110 kb on - strand, within HP15_1863 at 1969.177 kb on + strand, within HP15_1863 at 1969.317 kb on + strand, within HP15_1863 at 1969.358 kb on - strand, within HP15_1863 at 1969.464 kb on + strand, within HP15_1863 at 1969.464 kb on + strand, within HP15_1863 at 1969.472 kb on - strand, within HP15_1863 at 1969.472 kb on - strand, within HP15_1863 at 1969.599 kb on - strand at 1969.645 kb on + strand at 1969.669 kb on + strand at 1969.778 kb on + strand at 1970.062 kb on - strand at 1970.149 kb on + strand at 1970.447 kb on + strand, within HP15_1864 at 1970.501 kb on + strand, within HP15_1864 at 1970.509 kb on - strand, within HP15_1864 at 1970.570 kb on - strand, within HP15_1864 at 1970.570 kb on - strand, within HP15_1864 at 1970.866 kb on + strand, within HP15_1864 at 1970.874 kb on - strand, within HP15_1864
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 1,965,128 + HP15_1862 0.41 +1.5 1,965,311 - HP15_1862 0.57 -0.2 1,965,311 - HP15_1862 0.57 +0.3 1,965,416 - HP15_1862 0.67 -0.7 1,965,506 + HP15_1862 0.75 -1.0 1,965,683 + +1.2 1,965,691 - +1.3 1,965,701 - +0.5 1,965,713 + +1.0 1,965,762 - +0.6 1,965,808 - +0.2 1,966,079 - -0.5 1,966,079 - +0.0 1,966,128 + -1.3 1,966,136 - -2.5 1,966,136 - -1.2 1,966,208 - -0.5 1,966,367 + HP15_1863 0.11 -1.7 1,966,388 + HP15_1863 0.11 -1.7 1,966,438 + HP15_1863 0.13 -0.1 1,966,454 - HP15_1863 0.13 +0.2 1,966,568 - HP15_1863 0.16 -0.2 1,966,673 - HP15_1863 0.19 -1.5 1,966,806 - HP15_1863 0.22 -0.7 1,966,894 - HP15_1863 0.24 +0.1 1,966,939 - HP15_1863 0.25 -0.7 1,966,979 + HP15_1863 0.26 -0.4 1,967,111 + HP15_1863 0.30 -1.6 1,967,119 - HP15_1863 0.30 -0.6 1,967,123 + HP15_1863 0.30 +0.1 1,967,131 - HP15_1863 0.30 -1.1 1,967,141 - HP15_1863 0.31 -0.1 1,967,155 - HP15_1863 0.31 -0.6 1,967,178 + HP15_1863 0.31 +0.1 1,967,231 - HP15_1863 0.33 +1.1 1,967,303 + HP15_1863 0.35 -1.5 1,967,311 - HP15_1863 0.35 -1.5 1,967,384 + HP15_1863 0.37 -0.9 1,967,583 + HP15_1863 0.42 -2.1 1,967,693 - HP15_1863 0.45 +0.1 1,967,695 + HP15_1863 0.45 -1.5 1,967,730 + HP15_1863 0.45 -1.1 1,967,730 + HP15_1863 0.45 -0.3 1,967,738 - HP15_1863 0.46 -0.6 1,967,887 + HP15_1863 0.49 -0.5 1,967,887 + HP15_1863 0.49 -0.1 1,967,895 - HP15_1863 0.50 -3.1 1,967,958 - HP15_1863 0.51 -0.7 1,968,246 - HP15_1863 0.59 -2.1 1,968,261 + HP15_1863 0.59 -0.6 1,968,506 - HP15_1863 0.65 -0.8 1,968,641 + HP15_1863 0.69 -0.6 1,968,646 - HP15_1863 0.69 +0.7 1,968,656 - HP15_1863 0.69 -1.4 1,968,883 + HP15_1863 0.75 -0.4 1,969,110 - HP15_1863 0.81 -1.2 1,969,177 + HP15_1863 0.82 +0.1 1,969,317 + HP15_1863 0.86 -0.5 1,969,358 - HP15_1863 0.87 -3.3 1,969,464 + HP15_1863 0.90 +0.4 1,969,464 + HP15_1863 0.90 -0.2 1,969,472 - HP15_1863 0.90 -2.6 1,969,472 - HP15_1863 0.90 -0.9 1,969,599 - -0.1 1,969,645 + -0.6 1,969,669 + -1.2 1,969,778 + -0.7 1,970,062 - +0.9 1,970,149 + +0.3 1,970,447 + HP15_1864 0.27 -0.1 1,970,501 + HP15_1864 0.30 -0.1 1,970,509 - HP15_1864 0.30 +0.3 1,970,570 - HP15_1864 0.34 +0.2 1,970,570 - HP15_1864 0.34 +0.7 1,970,866 + HP15_1864 0.52 +0.5 1,970,874 - HP15_1864 0.52 -0.9
Or see this region's nucleotide sequence