Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1739 and HP15_1740 are separated by 53 nucleotides HP15_1740 and HP15_1741 are separated by 38 nucleotides HP15_1741 and HP15_1742 are separated by 245 nucleotides
HP15_1739: HP15_1739 - membrane protein containing DUF6, transmembrane, at 1,836,447 to 1,837,325
_1739
HP15_1740: HP15_1740 - enoyl-CoA hydratase/isomerase, at 1,837,379 to 1,838,182
_1740
HP15_1741: HP15_1741 - hypothetical protein, at 1,838,221 to 1,838,583
_1741
HP15_1742: HP15_1742 - secreted protein, at 1,838,829 to 1,839,464
_1742
Position (kb)
1838
1839 Strain fitness (log2 ratio)
-1
0
1
2 at 1837.333 kb on - strand at 1837.442 kb on + strand at 1837.487 kb on - strand, within HP15_1740 at 1837.487 kb on - strand, within HP15_1740 at 1837.518 kb on + strand, within HP15_1740 at 1837.781 kb on + strand, within HP15_1740 at 1837.789 kb on - strand, within HP15_1740 at 1837.789 kb on - strand, within HP15_1740 at 1837.819 kb on + strand, within HP15_1740 at 1837.820 kb on - strand, within HP15_1740 at 1837.890 kb on + strand, within HP15_1740 at 1837.954 kb on - strand, within HP15_1740 at 1838.075 kb on - strand, within HP15_1740 at 1838.075 kb on - strand, within HP15_1740 at 1838.112 kb on - strand at 1838.127 kb on + strand at 1838.135 kb on - strand at 1838.368 kb on - strand, within HP15_1741 at 1838.450 kb on - strand, within HP15_1741 at 1838.614 kb on + strand at 1838.617 kb on - strand at 1838.642 kb on - strand at 1838.658 kb on + strand at 1838.790 kb on + strand at 1838.940 kb on - strand, within HP15_1742 at 1838.940 kb on - strand, within HP15_1742 at 1839.208 kb on - strand, within HP15_1742 at 1839.220 kb on + strand, within HP15_1742 at 1839.340 kb on + strand, within HP15_1742 at 1839.376 kb on + strand, within HP15_1742 at 1839.417 kb on - strand at 1839.425 kb on + strand at 1839.433 kb on - strand at 1839.507 kb on + strand at 1839.525 kb on - strand at 1839.562 kb on + strand at 1839.562 kb on + strand at 1839.570 kb on - strand at 1839.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 1,837,333 - -0.8 1,837,442 + +1.7 1,837,487 - HP15_1740 0.13 +0.7 1,837,487 - HP15_1740 0.13 +0.2 1,837,518 + HP15_1740 0.17 -0.7 1,837,781 + HP15_1740 0.50 +0.2 1,837,789 - HP15_1740 0.51 +0.3 1,837,789 - HP15_1740 0.51 +0.9 1,837,819 + HP15_1740 0.55 +1.5 1,837,820 - HP15_1740 0.55 +0.7 1,837,890 + HP15_1740 0.64 -0.4 1,837,954 - HP15_1740 0.72 +0.6 1,838,075 - HP15_1740 0.87 +0.6 1,838,075 - HP15_1740 0.87 -0.4 1,838,112 - -0.9 1,838,127 + +1.0 1,838,135 - +0.5 1,838,368 - HP15_1741 0.40 +2.7 1,838,450 - HP15_1741 0.63 -1.1 1,838,614 + +0.4 1,838,617 - +0.6 1,838,642 - +0.9 1,838,658 + -1.5 1,838,790 + -0.0 1,838,940 - HP15_1742 0.17 +0.1 1,838,940 - HP15_1742 0.17 +1.1 1,839,208 - HP15_1742 0.60 -0.1 1,839,220 + HP15_1742 0.61 +1.5 1,839,340 + HP15_1742 0.80 +1.6 1,839,376 + HP15_1742 0.86 +1.5 1,839,417 - +0.7 1,839,425 + +0.1 1,839,433 - +1.2 1,839,507 + -0.2 1,839,525 - -0.9 1,839,562 + -1.4 1,839,562 + +2.3 1,839,570 - +0.4 1,839,570 - +1.5
Or see this region's nucleotide sequence