Experiment: m.b. Tetracycline 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1340 and HP15_1341 overlap by 13 nucleotides HP15_1341 and HP15_1342 are separated by 23 nucleotides
HP15_1340: HP15_1340 - GCN5-related N-acetyltransferase, at 1,407,740 to 1,408,276
_1340
HP15_1341: HP15_1341 - succinylglutamate desuccinylase/aspartoacylase-like protein, at 1,408,264 to 1,409,367
_1341
HP15_1342: HP15_1342 - uncharacterized conserved protein UCP012666, at 1,409,391 to 1,410,875
_1342
Position (kb)
1408
1409
1410 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1407.270 kb on + strand at 1407.291 kb on - strand at 1407.291 kb on - strand at 1407.291 kb on - strand at 1407.435 kb on + strand at 1407.440 kb on + strand at 1407.555 kb on + strand at 1407.605 kb on + strand at 1407.635 kb on - strand at 1407.643 kb on - strand at 1407.843 kb on + strand, within HP15_1340 at 1408.134 kb on + strand, within HP15_1340 at 1408.134 kb on + strand, within HP15_1340 at 1408.136 kb on + strand, within HP15_1340 at 1408.136 kb on + strand, within HP15_1340 at 1408.144 kb on - strand, within HP15_1340 at 1408.220 kb on - strand, within HP15_1340 at 1408.220 kb on - strand, within HP15_1340 at 1408.242 kb on - strand at 1408.384 kb on - strand, within HP15_1341 at 1408.397 kb on + strand, within HP15_1341 at 1408.457 kb on + strand, within HP15_1341 at 1408.480 kb on - strand, within HP15_1341 at 1408.558 kb on + strand, within HP15_1341 at 1408.569 kb on + strand, within HP15_1341 at 1408.701 kb on + strand, within HP15_1341 at 1408.707 kb on - strand, within HP15_1341 at 1408.751 kb on + strand, within HP15_1341 at 1408.886 kb on + strand, within HP15_1341 at 1408.916 kb on + strand, within HP15_1341 at 1408.960 kb on + strand, within HP15_1341 at 1409.118 kb on - strand, within HP15_1341 at 1409.263 kb on - strand at 1409.496 kb on - strand at 1409.592 kb on + strand, within HP15_1342 at 1409.636 kb on - strand, within HP15_1342 at 1409.720 kb on + strand, within HP15_1342 at 1409.823 kb on - strand, within HP15_1342 at 1409.838 kb on + strand, within HP15_1342 at 1409.838 kb on + strand, within HP15_1342 at 1409.855 kb on + strand, within HP15_1342 at 1409.888 kb on + strand, within HP15_1342 at 1409.922 kb on + strand, within HP15_1342 at 1410.095 kb on + strand, within HP15_1342 at 1410.129 kb on - strand, within HP15_1342 at 1410.216 kb on + strand, within HP15_1342
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.0125 mg/ml remove 1,407,270 + +2.8 1,407,291 - -0.5 1,407,291 - +0.7 1,407,291 - -0.7 1,407,435 + +0.8 1,407,440 + +0.3 1,407,555 + +0.6 1,407,605 + -0.1 1,407,635 - +1.2 1,407,643 - +0.7 1,407,843 + HP15_1340 0.19 -0.7 1,408,134 + HP15_1340 0.73 +0.0 1,408,134 + HP15_1340 0.73 -1.3 1,408,136 + HP15_1340 0.74 -1.6 1,408,136 + HP15_1340 0.74 -0.1 1,408,144 - HP15_1340 0.75 +1.2 1,408,220 - HP15_1340 0.89 +0.9 1,408,220 - HP15_1340 0.89 +0.9 1,408,242 - -1.0 1,408,384 - HP15_1341 0.11 -1.7 1,408,397 + HP15_1341 0.12 -1.5 1,408,457 + HP15_1341 0.17 -3.0 1,408,480 - HP15_1341 0.20 -1.0 1,408,558 + HP15_1341 0.27 -0.6 1,408,569 + HP15_1341 0.28 -0.9 1,408,701 + HP15_1341 0.40 +0.1 1,408,707 - HP15_1341 0.40 -0.5 1,408,751 + HP15_1341 0.44 -2.0 1,408,886 + HP15_1341 0.56 -0.7 1,408,916 + HP15_1341 0.59 +1.4 1,408,960 + HP15_1341 0.63 +0.2 1,409,118 - HP15_1341 0.77 +0.6 1,409,263 - -1.0 1,409,496 - -0.4 1,409,592 + HP15_1342 0.14 +0.0 1,409,636 - HP15_1342 0.16 -1.5 1,409,720 + HP15_1342 0.22 +0.7 1,409,823 - HP15_1342 0.29 +1.8 1,409,838 + HP15_1342 0.30 -0.3 1,409,838 + HP15_1342 0.30 -1.2 1,409,855 + HP15_1342 0.31 -0.3 1,409,888 + HP15_1342 0.33 -0.2 1,409,922 + HP15_1342 0.36 -0.1 1,410,095 + HP15_1342 0.47 +0.1 1,410,129 - HP15_1342 0.50 -0.4 1,410,216 + HP15_1342 0.56 -0.2
Or see this region's nucleotide sequence