Strain Fitness in Shewanella amazonensis SB2B around Sama_2769

Experiment: L-Serine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N)
3,308,936	-		Sama_2768	0.33	-0.9
3,308,936	-		Sama_2768	0.33	-0.1
3,309,001	-		Sama_2768	0.38	+0.7
3,309,052	+		Sama_2768	0.42	+0.5
3,309,053	-		Sama_2768	0.42	-0.3
3,309,096	+		Sama_2768	0.45	-1.4
3,309,097	-		Sama_2768	0.45	-0.1
3,309,097	-		Sama_2768	0.45	-0.1
3,309,097	-		Sama_2768	0.45	+1.9
3,309,116	+		Sama_2768	0.47	-1.1
3,309,117	-		Sama_2768	0.47	-0.6
3,309,117	-		Sama_2768	0.47	+0.3
3,309,117	-		Sama_2768	0.47	-0.2
3,309,117	-		Sama_2768	0.47	+0.3
3,309,117	-		Sama_2768	0.47	-0.1
3,309,117	-		Sama_2768	0.47	+0.2
3,309,126	+		Sama_2768	0.48	+0.4
3,309,126	+		Sama_2768	0.48	+0.2
3,309,126	+		Sama_2768	0.48	+0.1
3,309,126	+		Sama_2768	0.48	-1.6
3,309,127	-		Sama_2768	0.48	-0.7
3,309,127	-		Sama_2768	0.48	-0.6
3,309,127	-		Sama_2768	0.48	+0.3
3,309,136	-		Sama_2768	0.48	-0.1
3,309,153	+		Sama_2768	0.50	-1.3
3,309,153	+		Sama_2768	0.50	-1.1
3,309,153	+		Sama_2768	0.50	-1.9
3,309,153	+		Sama_2768	0.50	-0.8
3,309,153	+		Sama_2768	0.50	-0.4
3,309,154	-		Sama_2768	0.50	-0.7
3,309,154	-		Sama_2768	0.50	-1.1
3,309,154	-		Sama_2768	0.50	-1.4
3,309,154	-		Sama_2768	0.50	-0.5
3,309,154	-		Sama_2768	0.50	-0.7
3,309,165	-		Sama_2768	0.51	-2.8
3,309,165	-		Sama_2768	0.51	+1.2
3,309,165	-		Sama_2768	0.51	-0.1
3,309,196	+		Sama_2768	0.53	+0.1
3,309,196	+		Sama_2768	0.53	-0.7
3,309,197	-		Sama_2768	0.53	+0.3
3,309,197	-		Sama_2768	0.53	-0.5
3,309,197	-		Sama_2768	0.53	-0.3
3,309,197	-		Sama_2768	0.53	+0.3
3,309,237	+		Sama_2768	0.56	+0.5
3,309,238	-		Sama_2768	0.56	+2.0
3,309,238	-		Sama_2768	0.56	-0.6
3,309,239	+		Sama_2768	0.56	-0.1
3,309,239	+		Sama_2768	0.56	+0.5
3,309,239	+		Sama_2768	0.56	-0.0
3,309,239	+		Sama_2768	0.56	+0.3
3,309,239	+		Sama_2768	0.56	+1.7
3,309,239	+		Sama_2768	0.56	+0.7
3,309,239	+		Sama_2768	0.56	+3.4
3,309,239	+		Sama_2768	0.56	-1.1
3,309,239	+		Sama_2768	0.56	+0.3
3,309,239	+		Sama_2768	0.56	+0.2
3,309,239	+		Sama_2768	0.56	+3.3
3,309,240	-		Sama_2768	0.57	+0.3
3,309,240	-		Sama_2768	0.57	-0.2
3,309,240	-		Sama_2768	0.57	+3.9
3,309,240	-		Sama_2768	0.57	-2.6
3,309,240	-		Sama_2768	0.57	-2.4
3,309,240	-		Sama_2768	0.57	-1.8
3,309,240	-		Sama_2768	0.57	-2.0
3,309,240	-		Sama_2768	0.57	+0.9
3,309,240	-		Sama_2768	0.57	+0.6
3,309,240	-		Sama_2768	0.57	+1.2
3,309,240	-		Sama_2768	0.57	+0.1
3,309,240	-		Sama_2768	0.57	-1.6
3,309,282	+		Sama_2768	0.60	-1.1
3,309,331	+		Sama_2768	0.64	+0.2
3,309,331	+		Sama_2768	0.64	-0.5
3,309,343	+		Sama_2768	0.65	+0.1
3,309,388	+		Sama_2768	0.68	-0.7
3,309,388	+		Sama_2768	0.68	-0.4
3,309,388	+		Sama_2768	0.68	-0.3
3,309,388	+		Sama_2768	0.68	-1.4
3,309,388	+		Sama_2768	0.68	+8.3
3,309,389	-		Sama_2768	0.68	+0.4
3,309,389	-		Sama_2768	0.68	+0.2
3,309,389	-		Sama_2768	0.68	-1.3
3,309,389	-		Sama_2768	0.68	+0.3
3,309,389	-		Sama_2768	0.68	+0.9
3,309,389	-		Sama_2768	0.68	-0.7
3,309,389	-		Sama_2768	0.68	+0.3
3,309,397	-		Sama_2768	0.69	-0.8
3,309,397	-		Sama_2768	0.69	-1.1
3,309,495	+		Sama_2768	0.76	+0.3
3,309,495	+		Sama_2768	0.76	-0.7
3,309,496	-		Sama_2768	0.76	-0.2
3,309,533	+		Sama_2768	0.79	-0.2
3,309,534	-		Sama_2768	0.79	+0.1
3,309,549	+		Sama_2768	0.80	+0.3
3,309,591	+		Sama_2768	0.84	+0.8
3,309,591	+		Sama_2768	0.84	+0.1
3,309,591	+		Sama_2768	0.84	+0.5
3,309,592	-		Sama_2768	0.84	-0.3
3,309,592	-		Sama_2768	0.84	+0.2
3,309,616	+		Sama_2768	0.86	+0.2
3,309,617	-		Sama_2768	0.86	-0.9
3,309,628	+		Sama_2768	0.87	+0.1
3,309,629	-		Sama_2768	0.87	-1.0
3,309,649	+		Sama_2768	0.88	+1.1
3,309,650	-		Sama_2768	0.88	+0.4
3,309,650	-		Sama_2768	0.88	-0.0
3,309,650	-		Sama_2768	0.88	+0.6
3,309,650	-		Sama_2768	0.88	-0.3
3,309,664	+		Sama_2768	0.89	+0.5
3,309,664	+		Sama_2768	0.89	+0.8
3,309,714	+				+3.9
3,309,715	-				+2.4
3,309,726	+				-0.9
3,309,792	+				-1.5
3,309,811	+				-2.8
3,309,811	+				-0.3
3,309,836	+				+0.4
3,309,836	+				-0.8
3,309,836	+				-1.5
3,309,837	-				-1.1
3,309,837	-				+0.9
3,309,837	-				-0.3
3,309,837	-				-0.6
3,309,837	-				+0.1
3,309,840	+				+0.4
3,309,840	+				+0.1
3,309,840	+				+0.6
3,309,840	+				-0.9
3,309,841	-				-0.3
3,309,841	-				-1.6
3,309,883	-				+0.7
3,309,886	-				-0.6
3,309,886	-				-0.5
3,309,927	+				+5.2
3,309,927	+				+3.9
3,309,928	-				-0.4
3,309,982	+		Sama_2769	0.15	-0.9
3,309,982	+		Sama_2769	0.15	+0.9
3,309,982	+		Sama_2769	0.15	-0.2
3,309,983	-		Sama_2769	0.15	+0.0
3,310,018	+		Sama_2769	0.27	-0.1
3,310,019	-		Sama_2769	0.27	-0.5
3,310,019	-		Sama_2769	0.27	+1.4
3,310,019	-		Sama_2769	0.27	-1.6
3,310,019	-		Sama_2769	0.27	+0.4
3,310,027	+		Sama_2769	0.30	+0.8
3,310,028	-		Sama_2769	0.30	-0.4
3,310,028	-		Sama_2769	0.30	-0.6
3,310,050	+		Sama_2769	0.37	-0.7
3,310,051	-		Sama_2769	0.38	+0.3
3,310,051	-		Sama_2769	0.38	+1.1
3,310,051	-		Sama_2769	0.38	-1.0
3,310,051	-		Sama_2769	0.38	-2.8
3,310,051	-		Sama_2769	0.38	+0.3
3,310,051	-		Sama_2769	0.38	-0.4
3,310,051	-		Sama_2769	0.38	+0.8
3,310,079	+		Sama_2769	0.47	+2.6
3,310,080	-		Sama_2769	0.47	-0.3
3,310,084	+		Sama_2769	0.48	+1.1
3,310,084	+		Sama_2769	0.48	+1.7
3,310,084	+		Sama_2769	0.48	-1.9
3,310,084	+		Sama_2769	0.48	+0.0
3,310,084	+		Sama_2769	0.48	+3.3
3,310,085	-		Sama_2769	0.49	-0.0
3,310,085	-		Sama_2769	0.49	-0.3
3,310,171	+		Sama_2769	0.77	+0.0
3,310,171	+		Sama_2769	0.77	+2.2
3,310,172	-		Sama_2769	0.77	+1.0
3,310,173	+		Sama_2769	0.77	+0.6
3,310,173	+		Sama_2769	0.77	+0.6
3,310,174	-		Sama_2769	0.78	-0.4
3,310,174	-		Sama_2769	0.78	-1.4
3,310,181	+		Sama_2769	0.80	+0.2
3,310,181	+		Sama_2769	0.80	-1.5
3,310,200	-		Sama_2769	0.86	+1.2
3,310,264	+				+0.7
3,310,264	+				-0.0
3,310,264	+				-0.2
3,310,265	-				-0.5
3,310,265	-				-0.6
3,310,265	-				+1.3
3,310,265	-				+0.4
3,310,276	+				+1.1
3,310,277	-				-0.5
3,310,277	-				+0.0
3,310,277	-				-1.1
3,310,277	-				-1.3
3,310,280	+				-0.1
3,310,280	+				+2.1
3,310,280	+				+2.6
3,310,280	+				+0.5
3,310,280	+				-1.4
3,310,280	+				+0.9
3,310,280	+				-2.5
3,310,280	+				+1.9
3,310,280	+				-1.1
3,310,280	+				-0.1
3,310,280	+				+0.3
3,310,280	+				-0.3
3,310,280	+				-2.4
3,310,280	+				-1.6
3,310,280	+				+0.3
3,310,280	+				-0.4
3,310,280	+				+0.4
3,310,280	+				-0.8
3,310,280	+				+0.1
3,310,280	+				-1.0
3,310,281	-				+2.1
3,310,281	-				+1.7
3,310,281	-				-1.0
3,310,281	-				+0.2
3,310,281	-				-0.6
3,310,281	-				-1.6
3,310,281	-				-0.8
3,310,281	-				+0.1
3,310,281	-				-0.9
3,310,281	-				-1.3
3,310,281	-				-1.9
3,310,281	-				-0.7
3,310,281	-				+0.0
3,310,281	-				-0.5
3,310,281	-				-0.9
3,310,281	-				+0.1
3,310,281	-				-0.6
3,310,286	+				+0.8
3,310,286	+				+0.4
3,310,286	+				-0.5
3,310,287	-				-1.1
3,310,330	+				+1.6
3,310,360	+				-0.2
3,310,360	+				-0.4
3,310,361	-				-0.1
3,310,361	-				-0.6
3,310,361	-				+0.9
3,310,433	-				-2.2
3,310,440	+				+1.2
3,310,440	+				-0.2
3,310,451	+				-0.5
3,310,451	+				+0.8
3,310,451	+				-0.3
3,310,452	-				-2.0
3,310,452	-				-0.2
3,310,452	-				-0.8
3,310,452	-				+0.3
3,310,456	+				+0.7
3,310,456	+				-0.7
3,310,474	-				+4.7
3,310,495	+				-0.1
3,310,495	+				-0.3
3,310,495	+				-2.2
3,310,495	+				-0.4
3,310,495	+				-1.6
3,310,495	+				+2.9
3,310,496	-				+0.1
3,310,496	-				-0.3
3,310,496	-				-0.1
3,310,496	-				+3.9
3,310,496	-				+0.2
3,310,496	-				-0.3
3,310,496	-				-0.8
3,310,496	-				-1.3
3,310,519	+				+1.2
3,310,520	-				-1.9
3,310,527	-				+0.1
3,310,538	+		Sama_2770	0.11	-1.0
3,310,570	+		Sama_2770	0.18	-0.4
3,310,571	-		Sama_2770	0.18	+1.8
3,310,639	-		Sama_2770	0.33	+0.2
3,310,639	-		Sama_2770	0.33	+0.9
3,310,719	+		Sama_2770	0.51	+2.0
3,310,719	+		Sama_2770	0.51	-0.8
3,310,719	+		Sama_2770	0.51	-0.6
3,310,719	+		Sama_2770	0.51	+1.5
3,310,720	-		Sama_2770	0.51	+0.8
3,310,720	-		Sama_2770	0.51	+0.6
3,310,723	-		Sama_2770	0.52	+0.5
3,310,740	+		Sama_2770	0.56	+0.1
3,310,740	+		Sama_2770	0.56	+0.1
3,310,740	+		Sama_2770	0.56	-0.1
3,310,740	+		Sama_2770	0.56	+1.6
3,310,740	+		Sama_2770	0.56	-0.1
3,310,740	+		Sama_2770	0.56	-0.3
3,310,740	+		Sama_2770	0.56	-0.0
3,310,740	+		Sama_2770	0.56	-1.5
3,310,740	+		Sama_2770	0.56	+0.7
3,310,740	+		Sama_2770	0.56	-0.5
3,310,741	-		Sama_2770	0.56	-1.1
3,310,741	-		Sama_2770	0.56	-0.9
3,310,741	-		Sama_2770	0.56	-0.3
3,310,741	-		Sama_2770	0.56	+0.1
3,310,741	-		Sama_2770	0.56	-0.5
3,310,741	-		Sama_2770	0.56	-1.2
3,310,741	-		Sama_2770	0.56	-1.4
3,310,742	+		Sama_2770	0.56	-0.3
3,310,743	-		Sama_2770	0.56	+0.6
3,310,743	-		Sama_2770	0.56	-0.9
3,310,743	-		Sama_2770	0.56	+0.3
3,310,773	+		Sama_2770	0.63	+1.2
3,310,773	+		Sama_2770	0.63	+1.2
3,310,774	-		Sama_2770	0.63	-0.3
3,310,774	-		Sama_2770	0.63	-1.5
3,310,774	-		Sama_2770	0.63	-1.8
3,310,774	-		Sama_2770	0.63	+0.4
3,310,785	+		Sama_2770	0.66	+1.0
3,310,842	+		Sama_2770	0.78	-1.3
3,310,843	-		Sama_2770	0.78	-0.1
3,310,843	-		Sama_2770	0.78	-1.3
3,310,843	-		Sama_2770	0.78	+1.2
3,310,878	+		Sama_2770	0.86	+3.4
3,310,879	-		Sama_2770	0.86	+0.7
3,310,909	-				-0.4
3,310,909	-				-1.1
3,310,917	+				-0.5
3,310,917	+				-0.5
3,310,918	-				-1.9
3,310,955	+				-0.6
3,310,956	-				-1.9
3,310,959	+				+3.8
3,310,962	-				+0.1
3,311,049	+				-0.6
3,311,079	+				+1.5
3,311,079	+				-0.5
3,311,080	-				-0.6
3,311,080	-				-0.9
3,311,080	-				+0.0
3,311,080	-				-0.3
3,311,098	+				-0.4
3,311,179	+		Sama_2771	0.13	+0.9
3,311,179	+		Sama_2771	0.13	+0.4
3,311,179	+		Sama_2771	0.13	-0.3
3,311,179	+		Sama_2771	0.13	-0.6
3,311,180	-		Sama_2771	0.13	+0.9
3,311,180	-		Sama_2771	0.13	-0.1
3,311,180	-		Sama_2771	0.13	-1.4
3,311,180	-		Sama_2771	0.13	+0.3
3,311,239	+		Sama_2771	0.18	-1.1
3,311,240	-		Sama_2771	0.18	-0.4